Wall clock time and date at job start Wed Apr 1 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46979 * 2 1 4 4 N 1.46503 * 109.46999 * 240.00615 * 2 1 3 5 5 C 1.36940 * 120.00093 * 84.99581 * 4 2 1 6 6 H 1.07997 * 120.00025 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99942 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99870 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47352 * 59.99676 * 9 7 5 11 11 H 1.48496 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47213 * 299.99670 * 9 7 5 13 13 C 1.52995 * 109.47507 * 120.00458 * 2 1 3 14 14 H 1.08994 * 110.91707 * 63.90471 * 13 2 1 15 15 C 1.55159 * 111.00500 * 299.99782 * 13 2 1 16 16 C 1.54323 * 103.10377 * 206.33864 * 15 13 2 17 17 N 1.47490 * 107.03474 * 22.23656 * 16 15 13 18 18 C 1.34771 * 125.58972 * 181.07427 * 17 16 15 19 19 O 1.21551 * 119.99832 * 174.32175 * 18 17 16 20 20 C 1.47850 * 120.00166 * 354.31774 * 18 17 16 21 21 C 1.40599 * 120.27467 * 186.80105 * 20 18 17 22 22 N 1.30823 * 121.51337 * 179.75885 * 21 20 18 23 23 C 1.33752 * 121.79593 * 0.50873 * 22 21 20 24 24 N 1.33891 * 120.61704 * 179.74106 * 23 22 21 25 25 C 1.31336 * 119.84948 * 180.02562 * 24 23 22 26 26 C 1.39758 * 120.77271 * 359.97438 * 25 24 23 27 27 N 1.31306 * 120.55633 * 0.02562 * 26 25 24 28 28 C 1.33664 * 119.70430 * 359.95981 * 27 26 25 29 29 C 1.38902 * 120.27586 * 7.07611 * 20 18 17 30 30 C 1.47426 * 108.75816 * 1.03221 * 17 16 15 31 31 H 1.08990 * 109.47601 * 59.99562 * 1 2 3 32 32 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46476 * 299.99123 * 1 2 3 34 34 H 0.97001 * 120.00012 * 265.00112 * 4 2 1 35 35 H 0.97003 * 119.99368 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.71830 * 324.78734 * 15 13 2 37 37 H 1.08997 * 110.71766 * 87.87983 * 15 13 2 38 38 H 1.08997 * 109.88148 * 141.70274 * 16 15 13 39 39 H 1.09009 * 109.87872 * 262.86429 * 16 15 13 40 40 H 1.07993 * 119.24362 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.61145 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.71955 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.99648 * 359.95421 * 29 20 18 44 44 H 1.08999 * 110.36214 * 217.04937 * 30 17 16 45 45 H 1.08996 * 110.45759 * 94.77801 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0405 -2.4244 7 6 2.6112 -0.6617 -3.5094 8 7 2.9243 -1.9387 -3.4504 9 14 2.7901 0.2705 -5.1183 10 1 3.7461 1.3923 -4.9367 11 1 3.2990 -0.6478 -6.1685 12 1 1.4681 0.8083 -5.5285 13 6 2.0401 -0.7213 1.2491 14 1 1.7476 -1.7712 1.2389 15 6 1.5427 -0.0179 2.5396 16 6 2.6219 -0.3890 3.5784 17 7 3.8429 -0.7366 2.8277 18 6 5.0097 -1.1376 3.3701 19 8 5.9217 -1.4981 2.6519 20 6 5.1805 -1.1389 4.8387 21 6 6.4363 -1.4180 5.4060 22 7 6.6157 -1.4211 6.7019 23 6 5.6148 -1.1695 7.5526 24 7 5.8239 -1.1838 8.8750 25 6 4.8300 -0.9351 9.6967 26 6 3.5513 -0.6538 9.2078 27 7 3.3203 -0.6337 7.9153 28 6 4.3169 -0.8835 7.0604 29 6 4.1003 -0.8700 5.6696 30 6 3.5760 -0.5741 1.3869 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8901 34 1 2.2490 -1.6317 -1.1528 35 1 3.2476 -2.3959 -4.2425 36 1 1.4991 1.0619 2.3978 37 1 0.5692 -0.4057 2.8394 38 1 2.8149 0.4614 4.2324 39 1 2.2909 -1.2445 4.1673 40 1 7.2729 -1.6306 4.7571 41 1 5.0028 -0.9481 10.7627 42 1 2.7464 -0.4513 9.8988 43 1 3.1239 -0.6560 5.2607 44 1 4.0843 -1.3518 0.8170 45 1 3.8945 0.4121 1.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672210931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:51 Heat of formation + Delta-G solvation = 66.221961 kcal Electronic energy + Delta-G solvation = -28765.440800 eV Core-core repulsion = 24783.692806 eV Total energy + Delta-G solvation = -3981.747994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89609 -41.44228 -39.57769 -38.78547 -36.98126 -36.17461 -34.47185 -33.37952 -32.34525 -31.88206 -30.18469 -29.61212 -27.35782 -26.39286 -25.91092 -24.70637 -24.15851 -22.84682 -21.72976 -21.07835 -20.50556 -19.33787 -19.06239 -18.42384 -17.89223 -17.39355 -16.83469 -16.67294 -16.42712 -16.32492 -15.79534 -15.71530 -15.42743 -15.20267 -14.71173 -14.50507 -14.29248 -14.16578 -13.87997 -13.76683 -13.54516 -13.37302 -13.13224 -13.03109 -12.88009 -12.77243 -12.46515 -12.33907 -12.23336 -12.02851 -11.94506 -11.72968 -11.51768 -11.34371 -11.24423 -10.90538 -10.61512 -10.36105 -9.89738 -9.82846 -8.96549 -7.90809 -5.17882 -1.28050 -0.93394 0.52497 1.17309 1.47153 1.49703 1.55384 1.64842 1.95062 2.37821 2.57970 2.71416 2.81822 2.86519 3.22808 3.36490 3.43379 3.48054 3.62287 3.67607 3.79286 3.85754 3.98058 4.14098 4.17667 4.20695 4.30210 4.35340 4.48752 4.56173 4.61863 4.66811 4.79591 4.85526 4.88654 4.94162 5.06430 5.13592 5.20061 5.25531 5.31756 5.44319 5.55997 5.68488 5.79957 6.25236 6.31481 6.32155 6.73066 6.83996 7.37547 8.16224 8.36298 9.32564 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.002281 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.734658 B =12273.988256 C =13266.105353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.301 1.301 12 H -0.277 1.277 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.113 4.113 16 C 0.077 3.923 17 N -0.607 5.607 18 C 0.572 3.428 19 O -0.572 6.572 20 C -0.176 4.176 21 C 0.206 3.794 22 N -0.485 5.485 23 C 0.247 3.753 24 N -0.463 5.463 25 C 0.133 3.867 26 C 0.093 3.907 27 N -0.421 5.421 28 C 0.005 3.995 29 C -0.009 4.009 30 C 0.123 3.877 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.184 0.816 41 H 0.234 0.766 42 H 0.238 0.762 43 H 0.211 0.789 44 H 0.045 0.955 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 5.419 31.998 32.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.203 1.203 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.150 4.150 16 C -0.043 4.043 17 N -0.338 5.338 18 C 0.361 3.639 19 O -0.453 6.453 20 C -0.183 4.183 21 C 0.029 3.971 22 N -0.194 5.194 23 C 0.008 3.992 24 N -0.178 5.178 25 C -0.047 4.047 26 C -0.085 4.085 27 N -0.136 5.136 28 C -0.119 4.119 29 C -0.035 4.035 30 C 0.000 4.000 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.201 0.799 41 H 0.250 0.750 42 H 0.254 0.746 43 H 0.227 0.773 44 H 0.063 0.937 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.805 5.173 31.705 32.349 hybrid contribution 0.142 -0.208 -1.997 2.013 sum -3.662 4.965 29.708 30.341 Atomic orbital electron populations 1.22285 0.96878 1.00977 1.01185 1.20423 0.93249 0.94800 0.84498 0.93401 1.42665 1.78485 1.10254 1.06401 1.19550 1.34268 0.94099 0.88273 0.90541 1.25503 1.03471 0.96825 1.01390 1.69812 1.52941 1.10237 1.29235 0.85308 0.77931 0.77276 0.79856 1.20710 1.22735 1.20262 1.22497 0.92116 1.00810 0.95898 0.90464 1.22787 0.98809 1.02361 0.91092 1.23035 0.83663 1.01854 0.95775 1.48608 1.11693 1.64862 1.08659 1.17839 0.81558 0.77386 0.87110 1.90819 1.41795 1.49502 1.63151 1.20862 0.96556 1.07477 0.93391 1.23333 0.96252 0.87693 0.89775 1.67573 1.32935 1.15405 1.03525 1.20446 0.89484 0.96771 0.92499 1.68395 1.35715 1.12358 1.01357 1.25332 0.88343 0.87949 1.03111 1.25211 0.99208 0.91971 0.92102 1.68690 1.30878 1.09217 1.04812 1.20238 0.91938 1.03838 0.95908 1.23589 1.01860 0.87968 0.90131 1.22118 0.97248 1.00836 0.79765 0.94941 0.93984 0.89773 0.79860 0.94358 0.88602 0.86466 0.87742 0.88037 0.79905 0.75013 0.74636 0.77304 0.93651 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.27 71.98 0.67 -3.90 16 2 C 0.18 6.16 2.43 44.99 0.11 6.27 16 3 H 0.05 1.68 8.01 -2.39 -0.02 1.66 16 4 N -0.74 -35.50 4.97 -322.94 -1.61 -37.11 16 5 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 6 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 8 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 9 Si 0.97 46.62 29.55 68.60 2.03 48.64 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C -0.09 -2.55 2.66 -9.40 -0.02 -2.58 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.11 -1.77 5.28 31.78 0.17 -1.60 16 16 C 0.08 1.19 4.89 86.64 0.42 1.61 16 17 N -0.61 -15.87 3.34 -820.85 -2.74 -18.61 16 18 C 0.57 17.12 7.81 86.79 0.68 17.80 16 19 O -0.57 -22.32 16.60 -3.88 -0.06 -22.39 16 20 C -0.18 -4.22 5.88 -20.00 -0.12 -4.34 16 21 C 0.21 5.25 10.73 85.42 0.92 6.17 16 22 N -0.49 -13.18 10.39 -192.76 -2.00 -15.19 16 23 C 0.25 5.86 7.60 134.96 1.03 6.89 16 24 N -0.46 -9.11 10.55 -193.11 -2.04 -11.15 16 25 C 0.13 1.00 11.21 85.13 0.95 1.95 16 26 C 0.09 0.52 11.22 85.14 0.96 1.48 16 27 N -0.42 -5.81 10.46 -187.99 -1.97 -7.78 16 28 C 0.01 0.10 6.59 40.34 0.27 0.36 16 29 C -0.01 -0.17 8.69 23.05 0.20 0.03 16 30 C 0.12 3.99 6.26 86.86 0.54 4.53 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.74 7.27 -2.39 -0.02 1.72 16 34 H 0.37 19.65 7.80 -92.71 -0.72 18.92 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 37 H 0.12 1.22 8.11 -2.39 -0.02 1.21 16 38 H 0.10 1.13 6.75 -2.39 -0.02 1.12 16 39 H 0.10 1.16 6.75 -2.38 -0.02 1.14 16 40 H 0.18 4.48 7.65 -2.91 -0.02 4.45 16 41 H 0.23 -0.76 8.06 -2.91 -0.02 -0.78 16 42 H 0.24 -1.29 8.06 -2.91 -0.02 -1.32 16 43 H 0.21 2.73 2.84 -5.57 -0.02 2.71 16 44 H 0.04 1.86 7.98 -2.39 -0.02 1.84 16 45 H 0.06 2.20 7.98 -2.39 -0.02 2.18 16 Total: -1.00 -84.46 372.05 0.28 -84.18 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.32 Total: 20.45 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 8.07 Total: 18.91 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -10.07 Total: -149.80 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -84.46 0.28 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.407 kcal (2) G-P(sol) polarization free energy of solvation -84.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds