Wall clock time and date at job start Wed Apr 1 2020 00:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46943 * 2 1 4 4 N 1.46496 * 109.47114 * 240.00069 * 2 1 3 5 5 C 1.36937 * 120.00269 * 84.99968 * 4 2 1 6 6 H 1.07996 * 119.99869 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00352 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99754 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47054 * 60.00367 * 9 7 5 11 11 H 1.48502 * 109.46965 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47345 * 300.00304 * 9 7 5 13 13 C 1.53001 * 109.46972 * 120.00208 * 2 1 3 14 14 H 1.09004 * 110.88718 * 60.94922 * 13 2 1 15 15 C 1.55161 * 111.00141 * 184.82960 * 13 2 1 16 16 C 1.54329 * 102.94088 * 153.57476 * 15 13 2 17 17 N 1.47017 * 107.26942 * 337.80761 * 16 15 13 18 18 C 1.34778 * 125.64971 * 178.98703 * 17 16 15 19 19 O 1.21552 * 120.00694 * 185.68463 * 18 17 16 20 20 C 1.47849 * 119.99802 * 5.68069 * 18 17 16 21 21 C 1.40596 * 120.28204 * 173.01554 * 20 18 17 22 22 N 1.30817 * 121.52298 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79955 * 0.02562 * 22 21 20 24 24 N 1.33890 * 120.62304 * 180.02562 * 23 22 21 25 25 C 1.31332 * 119.84535 * 179.97438 * 24 23 22 26 26 C 1.39764 * 120.77836 * 0.02562 * 25 24 23 27 27 N 1.31309 * 120.55307 * 359.95700 * 26 25 24 28 28 C 1.33662 * 119.70545 * 0.03974 * 27 26 25 29 29 C 1.38905 * 120.27688 * 352.74829 * 20 18 17 30 30 C 1.47426 * 108.70750 * 358.93876 * 17 16 15 31 31 H 1.08993 * 109.47035 * 295.05157 * 1 2 3 32 32 H 1.09003 * 109.46872 * 175.05292 * 1 2 3 33 33 H 1.08993 * 109.46865 * 55.05399 * 1 2 3 34 34 H 0.97008 * 120.00142 * 264.99477 * 4 2 1 35 35 H 0.97003 * 119.99629 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.71851 * 271.93378 * 15 13 2 37 37 H 1.08998 * 110.72229 * 35.21443 * 15 13 2 38 38 H 1.09003 * 109.87942 * 97.22075 * 16 15 13 39 39 H 1.09000 * 109.88294 * 218.23444 * 16 15 13 40 40 H 1.08000 * 119.23717 * 0.02562 * 21 20 18 41 41 H 1.08001 * 119.61072 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.72092 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.99899 * 359.97438 * 29 20 18 44 44 H 1.08999 * 110.36720 * 265.29639 * 30 17 16 45 45 H 1.08997 * 110.36575 * 142.96927 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7901 0.2700 -5.1183 10 1 3.7445 1.3932 -4.9372 11 1 3.2991 -0.6484 -6.1684 12 1 1.4673 0.8058 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.7033 -1.7579 1.2641 15 6 3.5862 -0.6373 1.3476 16 6 3.8431 -0.7585 2.8645 17 7 2.6047 -0.3613 3.5500 18 6 2.4145 -0.3495 4.8843 19 8 1.3151 -0.1010 5.3394 20 6 3.5431 -0.6389 5.7944 21 6 3.3908 -0.4856 7.1837 22 7 4.3729 -0.7352 8.0111 23 6 5.5700 -1.1476 7.5801 24 7 6.5586 -1.3968 8.4480 25 6 7.7280 -1.8016 8.0080 26 6 7.9562 -1.9762 6.6402 27 7 7.0030 -1.7389 5.7688 28 6 5.8049 -1.3261 6.1938 29 6 4.7612 -1.0697 5.2845 30 6 1.6056 0.0231 2.5364 31 1 -0.3633 0.4351 0.9309 32 1 -0.3633 -1.0239 -0.0886 33 1 -0.3633 0.5886 -0.8423 34 1 2.2491 -1.6318 -1.1526 35 1 3.2494 -2.3958 -4.2418 36 1 4.0522 -1.4633 0.8104 37 1 3.9451 0.3206 0.9711 38 1 4.0923 -1.7892 3.1171 39 1 4.6594 -0.0977 3.1563 40 1 2.4409 -0.1550 7.5769 41 1 8.5229 -2.0011 8.7114 42 1 8.9246 -2.3094 6.2972 43 1 4.9045 -1.2005 4.2221 44 1 1.6236 1.1010 2.3756 45 1 0.6105 -0.2989 2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672210932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:54 Heat of formation + Delta-G solvation = 91.132198 kcal Electronic energy + Delta-G solvation = -28720.534649 eV Core-core repulsion = 24739.866844 eV Total energy + Delta-G solvation = -3980.667805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18583 -40.52406 -38.68815 -37.74565 -35.74332 -35.25634 -33.07208 -32.12446 -31.61381 -30.62130 -29.39178 -27.65491 -26.70218 -25.65786 -24.47105 -23.62964 -23.10836 -21.57456 -20.93662 -19.77867 -19.67004 -18.54985 -17.67748 -17.30757 -16.89886 -16.39026 -16.01788 -15.67363 -15.60605 -15.15202 -14.96606 -14.31473 -14.10050 -13.95546 -13.60971 -13.33773 -13.26857 -13.13426 -12.78169 -12.56694 -12.49056 -12.28191 -12.23894 -12.16996 -11.67072 -11.26562 -11.19573 -10.92395 -10.81047 -10.66954 -10.45769 -10.30380 -10.28952 -9.93171 -9.81947 -9.68935 -9.65351 -9.20273 -8.96325 -8.84892 -7.02443 -5.81978 -3.10697 -0.59603 -0.23696 1.22939 1.92721 2.61186 2.80083 3.03946 3.37669 3.40102 3.45384 3.45708 3.53813 3.54638 4.02926 4.12254 4.17091 4.36713 4.50842 4.56039 4.58156 4.72706 4.81288 4.90609 4.91616 5.11321 5.23623 5.27816 5.40759 5.47267 5.54869 5.76336 5.77649 5.85383 5.86674 5.94271 6.06170 6.12226 6.27190 6.35987 6.43758 6.48893 6.56642 6.80500 6.93935 7.03631 7.21984 7.43023 7.65017 7.81051 8.36451 9.48046 10.04280 10.39121 11.40479 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.002361 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.988677 B =11854.066819 C =13288.009910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.083 0.917 15 C -0.117 4.117 16 C 0.080 3.920 17 N -0.605 5.605 18 C 0.577 3.423 19 O -0.529 6.529 20 C -0.169 4.169 21 C 0.215 3.785 22 N -0.459 5.459 23 C 0.270 3.730 24 N -0.420 5.420 25 C 0.113 3.887 26 C 0.072 3.928 27 N -0.404 5.404 28 C 0.018 3.982 29 C -0.024 4.024 30 C 0.113 3.887 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.185 0.815 43 H 0.191 0.809 44 H 0.075 0.925 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 0.189 21.367 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.102 0.898 15 C -0.155 4.155 16 C -0.042 4.042 17 N -0.338 5.338 18 C 0.365 3.635 19 O -0.407 6.407 20 C -0.176 4.176 21 C 0.037 3.963 22 N -0.168 5.168 23 C 0.031 3.969 24 N -0.135 5.135 25 C -0.066 4.066 26 C -0.104 4.104 27 N -0.118 5.118 28 C -0.108 4.108 29 C -0.051 4.051 30 C -0.009 4.009 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.204 0.796 41 H 0.202 0.798 42 H 0.202 0.798 43 H 0.208 0.792 44 H 0.093 0.907 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.087 0.592 22.424 23.845 hybrid contribution 0.512 -0.058 -1.787 1.859 sum 8.599 0.534 20.637 22.364 Atomic orbital electron populations 1.22508 0.99154 1.01358 0.99837 1.20126 0.91869 0.95142 0.85337 0.93205 1.42355 1.78194 1.10639 1.05100 1.19159 1.36601 0.93829 0.87301 0.91282 1.24714 1.02162 0.95949 0.97990 1.69640 1.50823 1.08633 1.29025 0.86302 0.77785 0.78610 0.83677 1.21303 1.21744 1.21316 1.22694 0.94945 1.00559 0.94086 0.89824 1.22652 0.96692 1.04633 0.91484 1.22719 0.86911 0.99621 0.94969 1.48445 1.15766 1.64906 1.04667 1.17443 0.87307 0.78064 0.80689 1.90813 1.24672 1.49695 1.75509 1.21180 0.95077 1.05093 0.96262 1.23356 0.97225 0.88142 0.87531 1.67611 0.98583 1.12472 1.38115 1.20191 0.92716 0.95931 0.88094 1.68349 0.99567 1.08628 1.36932 1.24364 0.94460 0.91829 0.95997 1.24267 0.99470 0.95876 0.90823 1.68620 0.99076 1.06347 1.37759 1.20252 0.94282 1.02653 0.93600 1.23494 0.89320 0.88976 1.03306 1.22440 0.92265 0.99754 0.86400 0.94306 0.93262 0.92835 0.78271 0.93470 0.88989 0.89809 0.90398 0.90498 0.79645 0.79798 0.79836 0.79234 0.90685 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.38 37.16 0.35 -2.46 16 2 C 0.19 3.26 2.40 -67.93 -0.16 3.09 16 3 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 4 N -0.72 -16.40 4.90 -53.43 -0.26 -16.66 16 5 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -26.88 13.06 55.49 0.72 -26.16 16 9 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.10 -1.45 2.64 -88.47 -0.23 -1.68 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.49 6.21 -24.89 -0.15 -1.64 16 16 C 0.08 0.82 4.87 -3.06 -0.01 0.81 16 17 N -0.61 -7.29 3.33 -173.43 -0.58 -7.87 16 18 C 0.58 7.40 7.81 -12.33 -0.10 7.30 16 19 O -0.53 -8.16 16.60 5.32 0.09 -8.07 16 20 C -0.17 -1.88 5.88 -104.83 -0.62 -2.50 16 21 C 0.22 2.38 10.73 -17.09 -0.18 2.20 16 22 N -0.46 -5.79 10.39 -12.28 -0.13 -5.92 16 23 C 0.27 3.29 7.60 -157.60 -1.20 2.09 16 24 N -0.42 -4.55 10.55 -12.39 -0.13 -4.68 16 25 C 0.11 0.71 11.21 -17.19 -0.19 0.51 16 26 C 0.07 0.44 11.22 -17.20 -0.19 0.25 16 27 N -0.40 -3.88 10.46 -10.77 -0.11 -3.99 16 28 C 0.02 0.20 6.59 -84.78 -0.56 -0.35 16 29 C -0.02 -0.25 8.68 -38.38 -0.33 -0.58 16 30 C 0.11 1.45 5.41 -2.53 -0.01 1.43 16 31 H 0.04 0.54 7.09 -51.93 -0.37 0.17 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.38 9.32 7.80 -40.82 -0.32 9.00 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 38 H 0.08 0.71 6.73 -51.93 -0.35 0.36 16 39 H 0.08 0.68 6.75 -51.93 -0.35 0.33 16 40 H 0.19 1.74 7.65 -52.49 -0.40 1.34 16 41 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.18 0.33 8.06 -52.49 -0.42 -0.10 16 43 H 0.19 1.71 2.86 -54.83 -0.16 1.56 16 44 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 45 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -33.70 371.85 -9.35 -43.05 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.68 Total: 6.41 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.85 Total: 1.71 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.49 Total: -65.28 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.70 -9.35 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.180 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds