Wall clock time and date at job start Wed Apr 1 2020 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46943 * 2 1 4 4 N 1.46496 * 109.47114 * 240.00069 * 2 1 3 5 5 C 1.36937 * 120.00269 * 84.99968 * 4 2 1 6 6 H 1.07996 * 119.99869 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00352 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99754 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47054 * 60.00367 * 9 7 5 11 11 H 1.48502 * 109.46965 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47345 * 300.00304 * 9 7 5 13 13 C 1.53001 * 109.46972 * 120.00208 * 2 1 3 14 14 H 1.09004 * 110.88718 * 60.94922 * 13 2 1 15 15 C 1.55161 * 111.00141 * 184.82960 * 13 2 1 16 16 C 1.54329 * 102.94088 * 153.57476 * 15 13 2 17 17 N 1.47017 * 107.26942 * 337.80761 * 16 15 13 18 18 C 1.34778 * 125.64971 * 178.98703 * 17 16 15 19 19 O 1.21552 * 120.00694 * 185.68463 * 18 17 16 20 20 C 1.47849 * 119.99802 * 5.68069 * 18 17 16 21 21 C 1.40596 * 120.28204 * 173.01554 * 20 18 17 22 22 N 1.30817 * 121.52298 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79955 * 0.02562 * 22 21 20 24 24 N 1.33890 * 120.62304 * 180.02562 * 23 22 21 25 25 C 1.31332 * 119.84535 * 179.97438 * 24 23 22 26 26 C 1.39764 * 120.77836 * 0.02562 * 25 24 23 27 27 N 1.31309 * 120.55307 * 359.95700 * 26 25 24 28 28 C 1.33662 * 119.70545 * 0.03974 * 27 26 25 29 29 C 1.38905 * 120.27688 * 352.74829 * 20 18 17 30 30 C 1.47426 * 108.70750 * 358.93876 * 17 16 15 31 31 H 1.08993 * 109.47035 * 295.05157 * 1 2 3 32 32 H 1.09003 * 109.46872 * 175.05292 * 1 2 3 33 33 H 1.08993 * 109.46865 * 55.05399 * 1 2 3 34 34 H 0.97008 * 120.00142 * 264.99477 * 4 2 1 35 35 H 0.97003 * 119.99629 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.71851 * 271.93378 * 15 13 2 37 37 H 1.08998 * 110.72229 * 35.21443 * 15 13 2 38 38 H 1.09003 * 109.87942 * 97.22075 * 16 15 13 39 39 H 1.09000 * 109.88294 * 218.23444 * 16 15 13 40 40 H 1.08000 * 119.23717 * 0.02562 * 21 20 18 41 41 H 1.08001 * 119.61072 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.72092 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.99899 * 359.97438 * 29 20 18 44 44 H 1.08999 * 110.36720 * 265.29639 * 30 17 16 45 45 H 1.08997 * 110.36575 * 142.96927 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7901 0.2700 -5.1183 10 1 3.7445 1.3932 -4.9372 11 1 3.2991 -0.6484 -6.1684 12 1 1.4673 0.8058 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.7033 -1.7579 1.2641 15 6 3.5862 -0.6373 1.3476 16 6 3.8431 -0.7585 2.8645 17 7 2.6047 -0.3613 3.5500 18 6 2.4145 -0.3495 4.8843 19 8 1.3151 -0.1010 5.3394 20 6 3.5431 -0.6389 5.7944 21 6 3.3908 -0.4856 7.1837 22 7 4.3729 -0.7352 8.0111 23 6 5.5700 -1.1476 7.5801 24 7 6.5586 -1.3968 8.4480 25 6 7.7280 -1.8016 8.0080 26 6 7.9562 -1.9762 6.6402 27 7 7.0030 -1.7389 5.7688 28 6 5.8049 -1.3261 6.1938 29 6 4.7612 -1.0697 5.2845 30 6 1.6056 0.0231 2.5364 31 1 -0.3633 0.4351 0.9309 32 1 -0.3633 -1.0239 -0.0886 33 1 -0.3633 0.5886 -0.8423 34 1 2.2491 -1.6318 -1.1526 35 1 3.2494 -2.3958 -4.2418 36 1 4.0522 -1.4633 0.8104 37 1 3.9451 0.3206 0.9711 38 1 4.0923 -1.7892 3.1171 39 1 4.6594 -0.0977 3.1563 40 1 2.4409 -0.1550 7.5769 41 1 8.5229 -2.0011 8.7114 42 1 8.9246 -2.3094 6.2972 43 1 4.9045 -1.2005 4.2221 44 1 1.6236 1.1010 2.3756 45 1 0.6105 -0.2989 2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672210932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:53 Heat of formation + Delta-G solvation = 67.532523 kcal Electronic energy + Delta-G solvation = -28721.558008 eV Core-core repulsion = 24739.866844 eV Total energy + Delta-G solvation = -3981.691163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90087 -41.46941 -39.58647 -38.77212 -36.98407 -36.18429 -34.44898 -33.36056 -32.34316 -31.75916 -30.86336 -28.94974 -27.45119 -26.53347 -25.92921 -24.67335 -24.16188 -22.77064 -21.80691 -21.07179 -20.51843 -19.29843 -19.10322 -18.42452 -17.89491 -17.46613 -16.85488 -16.60639 -16.44773 -16.30321 -15.80381 -15.70992 -15.38739 -14.95612 -14.88317 -14.64715 -14.22970 -14.02940 -13.85854 -13.78776 -13.64768 -13.46634 -13.15792 -13.03439 -12.89384 -12.75773 -12.67588 -12.27997 -12.20526 -12.01984 -11.94020 -11.64045 -11.53562 -11.33735 -11.26343 -10.88052 -10.61413 -10.36211 -9.90415 -9.82858 -8.94818 -7.88732 -5.15193 -1.29007 -0.93189 0.51352 1.17538 1.50793 1.51984 1.57737 1.65078 1.95073 2.37675 2.60020 2.71764 2.81358 2.85616 3.20844 3.37027 3.44465 3.49575 3.60296 3.64405 3.77375 3.84088 3.96506 4.12153 4.18576 4.24795 4.29842 4.34316 4.43412 4.52875 4.59359 4.66643 4.72058 4.79542 4.86493 4.95258 5.04151 5.11067 5.20130 5.25177 5.31306 5.40486 5.57933 5.63488 5.79524 6.22904 6.31346 6.33922 6.72144 6.82215 7.40957 8.17310 8.40374 9.34316 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.002361 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.988677 B =11854.066819 C =13288.009910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.963 3.037 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.283 1.283 13 C -0.095 4.095 14 H 0.078 0.922 15 C -0.113 4.113 16 C 0.086 3.914 17 N -0.605 5.605 18 C 0.581 3.419 19 O -0.561 6.561 20 C -0.177 4.177 21 C 0.210 3.790 22 N -0.484 5.484 23 C 0.248 3.752 24 N -0.460 5.460 25 C 0.133 3.867 26 C 0.090 3.910 27 N -0.428 5.428 28 C 0.003 3.997 29 C -0.015 4.015 30 C 0.119 3.881 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.193 0.807 41 H 0.234 0.766 42 H 0.234 0.766 43 H 0.202 0.798 44 H 0.082 0.918 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.150 0.408 22.478 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.210 1.210 13 C -0.115 4.115 14 H 0.097 0.903 15 C -0.151 4.151 16 C -0.035 4.035 17 N -0.337 5.337 18 C 0.370 3.630 19 O -0.441 6.441 20 C -0.184 4.184 21 C 0.033 3.967 22 N -0.193 5.193 23 C 0.010 3.990 24 N -0.176 5.176 25 C -0.047 4.047 26 C -0.087 4.087 27 N -0.142 5.142 28 C -0.122 4.122 29 C -0.041 4.041 30 C -0.003 4.003 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.210 0.790 41 H 0.250 0.750 42 H 0.250 0.750 43 H 0.218 0.782 44 H 0.100 0.900 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.265 0.858 23.549 25.703 hybrid contribution 0.011 -0.160 -1.996 2.003 sum 10.276 0.698 21.552 23.887 Atomic orbital electron populations 1.22387 0.98221 1.00767 1.00717 1.20301 0.92328 0.95012 0.84963 0.93208 1.42506 1.78320 1.10281 1.05902 1.19509 1.34355 0.94040 0.88325 0.90892 1.25403 1.03397 0.96773 1.00971 1.69783 1.52825 1.09998 1.29254 0.85362 0.77736 0.77427 0.80137 1.20463 1.22589 1.20988 1.22474 0.96014 0.99905 0.93085 0.90314 1.22563 0.95412 1.03889 0.93225 1.22780 0.86696 1.01191 0.92881 1.48425 1.16087 1.64673 1.04467 1.17606 0.87262 0.77362 0.80790 1.90791 1.25968 1.51302 1.76021 1.20942 0.94936 1.06654 0.95862 1.23429 0.97343 0.88261 0.87627 1.67583 0.99383 1.13496 1.38863 1.20426 0.92977 0.96593 0.89012 1.68404 1.00883 1.10716 1.37550 1.25302 0.93821 0.88284 0.97278 1.25178 1.00221 0.92850 0.90482 1.68696 0.99131 1.07627 1.38785 1.20282 0.95226 1.03487 0.93157 1.23577 0.88856 0.88001 1.03708 1.22306 0.92356 0.99857 0.85767 0.91272 0.94119 0.94513 0.79431 0.94252 0.89948 0.90421 0.88730 0.88443 0.79041 0.74962 0.75030 0.78151 0.90027 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 9.38 71.98 0.68 -4.60 16 2 C 0.18 6.32 2.40 44.99 0.11 6.43 16 3 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 4 N -0.73 -33.33 4.90 -322.95 -1.58 -34.92 16 5 C -0.23 -11.96 9.93 84.03 0.83 -11.12 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 9 Si 0.96 44.63 29.55 68.60 2.03 46.66 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C -0.09 -2.61 2.64 -9.40 -0.02 -2.63 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.11 -2.78 6.21 31.79 0.20 -2.58 16 16 C 0.09 1.62 4.87 86.73 0.42 2.05 16 17 N -0.60 -13.91 3.33 -820.89 -2.73 -16.64 16 18 C 0.58 14.66 7.81 86.79 0.68 15.33 16 19 O -0.56 -17.37 16.60 -3.88 -0.06 -17.43 16 20 C -0.18 -3.90 5.88 -20.00 -0.12 -4.02 16 21 C 0.21 4.77 10.73 85.42 0.92 5.69 16 22 N -0.48 -12.42 10.39 -192.75 -2.00 -14.42 16 23 C 0.25 5.91 7.60 134.96 1.03 6.94 16 24 N -0.46 -9.21 10.55 -193.10 -2.04 -11.25 16 25 C 0.13 1.17 11.21 85.14 0.95 2.12 16 26 C 0.09 0.72 11.22 85.14 0.96 1.68 16 27 N -0.43 -7.10 10.46 -187.97 -1.97 -9.07 16 28 C 0.00 0.06 6.59 40.35 0.27 0.33 16 29 C -0.02 -0.30 8.68 23.05 0.20 -0.10 16 30 C 0.12 2.92 5.41 86.86 0.47 3.39 16 31 H 0.07 1.83 7.09 -2.39 -0.02 1.82 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.37 18.45 7.80 -92.70 -0.72 17.73 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 38 H 0.09 1.53 6.73 -2.39 -0.02 1.52 16 39 H 0.10 1.51 6.75 -2.39 -0.02 1.49 16 40 H 0.19 3.82 7.65 -2.91 -0.02 3.79 16 41 H 0.23 -0.49 8.06 -2.91 -0.02 -0.51 16 42 H 0.23 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.20 3.26 2.86 -5.12 -0.01 3.24 16 44 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 45 H 0.08 2.04 7.78 -2.39 -0.02 2.03 16 Total: -1.00 -75.18 371.85 0.27 -74.91 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.32 Total: 23.18 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 8.03 Total: 15.36 kcal Atomic # 7 Polarization: -132.63 SS G_CDS: -10.04 Total: -142.67 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.06 Total: -17.43 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.18 0.27 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.441 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds