Wall clock time and date at job start Wed Apr 1 2020 00:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47126 * 2 1 4 4 N 1.46498 * 109.47526 * 120.00958 * 2 1 3 5 5 C 1.36942 * 119.99332 * 275.26937 * 4 2 1 6 6 H 1.08001 * 120.00153 * 359.73134 * 5 4 2 7 7 C 1.38817 * 119.99879 * 179.72338 * 5 4 2 8 8 N 1.31616 * 120.00233 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99680 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46990 * 90.00353 * 9 7 5 11 11 H 1.48501 * 109.47234 * 209.99453 * 9 7 5 12 12 H 1.48494 * 109.47402 * 330.00001 * 9 7 5 13 13 C 1.53008 * 109.46902 * 240.00310 * 2 1 3 14 14 H 1.08994 * 110.88882 * 291.45327 * 13 2 1 15 15 C 1.55147 * 111.00454 * 167.52325 * 13 2 1 16 16 C 1.54324 * 102.94274 * 206.42667 * 15 13 2 17 17 N 1.47019 * 107.27220 * 22.19274 * 16 15 13 18 18 C 1.34781 * 125.65331 * 181.09547 * 17 16 15 19 19 O 1.21544 * 120.00366 * 185.02473 * 18 17 16 20 20 C 1.47850 * 119.99580 * 5.02437 * 18 17 16 21 21 C 1.40600 * 120.27792 * 171.87428 * 20 18 17 22 22 N 1.30817 * 121.51744 * 179.75944 * 21 20 18 23 23 C 1.33753 * 121.79788 * 0.50686 * 22 21 20 24 24 N 1.33886 * 120.61602 * 179.74129 * 23 22 21 25 25 C 1.31340 * 119.84501 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.77504 * 359.97438 * 25 24 23 27 27 N 1.31311 * 120.55632 * 0.02562 * 26 25 24 28 28 C 1.33666 * 119.70502 * 359.95770 * 27 26 25 29 29 C 1.38906 * 120.27678 * 352.15358 * 20 18 17 30 30 C 1.47427 * 108.70414 * 1.06238 * 17 16 15 31 31 H 1.09003 * 109.47099 * 184.90907 * 1 2 3 32 32 H 1.09008 * 109.46545 * 304.90272 * 1 2 3 33 33 H 1.08988 * 109.47773 * 64.90379 * 1 2 3 34 34 H 0.96993 * 120.00611 * 94.99784 * 4 2 1 35 35 H 0.96992 * 120.00371 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72142 * 324.78688 * 15 13 2 37 37 H 1.08995 * 110.72228 * 88.06370 * 15 13 2 38 38 H 1.08999 * 109.88562 * 262.77595 * 16 15 13 39 39 H 1.09002 * 109.88709 * 141.61456 * 16 15 13 40 40 H 1.08001 * 119.23551 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.60854 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.72324 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.99847 * 359.95565 * 29 20 18 44 44 H 1.09003 * 110.36733 * 217.03626 * 30 17 16 45 45 H 1.08998 * 110.46035 * 94.75510 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1440 -0.0090 2.3770 6 1 1.8870 1.0388 2.4256 7 6 2.6013 -0.6649 3.5118 8 7 2.7215 -0.0099 4.6470 9 14 3.0461 -2.4772 3.4275 10 1 4.4806 -2.6187 3.0704 11 1 2.8004 -3.1092 4.7487 12 1 2.2112 -3.1445 2.3966 13 6 2.0400 -0.7212 -1.2494 14 1 1.8184 -1.7873 -1.2004 15 6 3.5586 -0.4767 -1.4517 16 6 3.7353 -0.6419 -2.9759 17 7 2.4216 -0.4129 -3.5949 18 6 2.1507 -0.4867 -4.9132 19 8 1.0466 -0.1882 -5.3244 20 6 3.1968 -0.9307 -5.8590 21 6 2.8772 -1.1738 -7.2064 22 7 3.7844 -1.5628 -8.0649 23 6 5.0575 -1.7587 -7.7048 24 7 5.9656 -2.1621 -8.6021 25 6 7.2116 -2.3502 -8.2319 26 6 7.6048 -2.1338 -6.9083 27 7 6.7333 -1.7381 -6.0093 28 6 5.4598 -1.5399 -6.3635 29 6 4.5023 -1.1167 -5.4225 30 6 1.4493 -0.0899 -2.5348 31 1 -0.3633 -1.0239 0.0879 32 1 -0.3633 0.5881 0.8429 33 1 -0.3634 0.4358 -0.9305 34 1 2.2491 -1.6319 1.1524 35 1 3.0414 -0.4680 5.4398 36 1 3.8321 0.5310 -1.1388 37 1 4.1443 -1.2213 -0.9127 38 1 4.0808 -1.6507 -3.2019 39 1 4.4528 0.0897 -3.3474 40 1 1.8603 -1.0320 -7.5412 41 1 7.9409 -2.6760 -8.9587 42 1 8.6338 -2.2942 -6.6223 43 1 4.7747 -0.9410 -4.3924 44 1 0.4790 -0.5311 -2.7628 45 1 1.3565 0.9899 -2.4191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672210933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:57 Heat of formation + Delta-G solvation = 95.523744 kcal Electronic energy + Delta-G solvation = -28798.344310 eV Core-core repulsion = 24817.866937 eV Total energy + Delta-G solvation = -3980.477373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23966 -40.60799 -38.77354 -37.84429 -35.85475 -35.37848 -33.13010 -32.15832 -31.66885 -30.80239 -29.86102 -27.85114 -26.76761 -25.72803 -24.53213 -23.65033 -23.00353 -21.53771 -20.99286 -19.94240 -19.78203 -18.61305 -17.76068 -17.64447 -17.07716 -16.39186 -16.11324 -15.79327 -15.67347 -15.27012 -14.99776 -14.37283 -14.18000 -13.99040 -13.70724 -13.49846 -13.29552 -13.08218 -12.90228 -12.69174 -12.56853 -12.36720 -12.31668 -12.25830 -11.89878 -11.58688 -11.24916 -11.05220 -10.95607 -10.69977 -10.56943 -10.38776 -10.30714 -10.01819 -9.87503 -9.70518 -9.64156 -9.25620 -9.00042 -8.93671 -7.34503 -5.82415 -3.18536 -0.65014 -0.28725 1.17549 1.87468 2.52983 2.73830 2.99023 3.31596 3.32149 3.33819 3.40729 3.48628 3.49271 3.95999 4.06356 4.10943 4.31130 4.43310 4.49991 4.53194 4.62214 4.72400 4.76538 4.85038 4.97947 5.12381 5.19910 5.33697 5.36843 5.46273 5.54979 5.65484 5.70537 5.79139 5.80037 5.96080 6.00199 6.08504 6.25381 6.29734 6.38831 6.39490 6.71638 6.88618 6.93630 7.13567 7.38165 7.73957 7.93139 8.36328 9.14366 9.86718 10.05893 11.35880 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002524 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.893545 B =11090.791988 C =12479.927938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.060 0.940 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.083 0.917 15 C -0.121 4.121 16 C 0.080 3.920 17 N -0.606 5.606 18 C 0.578 3.422 19 O -0.527 6.527 20 C -0.169 4.169 21 C 0.215 3.785 22 N -0.459 5.459 23 C 0.271 3.729 24 N -0.420 5.420 25 C 0.113 3.887 26 C 0.073 3.927 27 N -0.404 5.404 28 C 0.018 3.982 29 C -0.024 4.024 30 C 0.115 3.885 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.185 0.815 43 H 0.190 0.810 44 H 0.083 0.917 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -4.035 -24.866 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.081 3.919 3 H 0.078 0.922 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.101 0.899 15 C -0.159 4.159 16 C -0.042 4.042 17 N -0.339 5.339 18 C 0.365 3.635 19 O -0.405 6.405 20 C -0.176 4.176 21 C 0.037 3.963 22 N -0.167 5.167 23 C 0.031 3.969 24 N -0.134 5.134 25 C -0.066 4.066 26 C -0.104 4.104 27 N -0.119 5.119 28 C -0.108 4.108 29 C -0.051 4.051 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.204 0.796 41 H 0.202 0.798 42 H 0.202 0.798 43 H 0.207 0.793 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.782 -3.803 -25.827 27.241 hybrid contribution 0.775 -1.301 0.933 1.779 sum 8.557 -5.104 -24.894 26.814 Atomic orbital electron populations 1.22500 0.98677 1.01412 1.00417 1.20102 0.92040 0.95448 0.84285 0.92222 1.42753 1.79878 1.09351 1.06927 1.19041 1.37106 0.95520 0.85517 0.89187 1.24666 1.01484 0.97383 0.95536 1.69691 1.52648 1.35609 1.00146 0.86578 0.78360 0.86847 0.76863 1.21105 1.21827 1.20380 1.22736 0.94581 1.01005 0.94393 0.89891 1.22709 0.97123 1.04384 0.91671 1.22711 0.85091 1.00821 0.95560 1.48445 1.11843 1.68202 1.05414 1.17439 0.86959 0.78433 0.80641 1.90819 1.23210 1.49554 1.76878 1.21174 0.94478 1.05227 0.96718 1.23362 0.99252 0.86779 0.86859 1.67614 0.99508 1.13240 1.36345 1.20191 0.92310 0.95870 0.88525 1.68356 1.01404 1.08862 1.34808 1.24370 0.92904 0.92812 0.96522 1.24268 1.00870 0.94742 0.90516 1.68618 1.00475 1.07048 1.35738 1.20246 0.93236 1.03066 0.94265 1.23446 0.90392 0.89090 1.02172 1.22424 0.92412 1.00840 0.84980 0.93382 0.92309 0.93913 0.80696 0.93036 0.89460 0.89312 0.90467 0.90252 0.79623 0.79770 0.79825 0.79347 0.89852 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.30 37.16 0.35 -2.37 16 2 C 0.19 3.18 2.48 -67.93 -0.17 3.01 16 3 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 4 N -0.75 -15.92 4.87 -53.42 -0.26 -16.18 16 5 C -0.24 -6.38 10.41 -15.05 -0.16 -6.54 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 7 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 9 Si 0.88 21.10 27.74 -169.99 -4.71 16.38 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.22 6.52 56.52 0.37 -5.86 16 13 C -0.11 -1.39 2.69 -88.47 -0.24 -1.63 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.12 -1.38 6.36 -24.90 -0.16 -1.54 16 16 C 0.08 0.75 4.87 -3.07 -0.01 0.73 16 17 N -0.61 -6.82 3.33 -173.10 -0.58 -7.39 16 18 C 0.58 7.03 7.81 -12.33 -0.10 6.93 16 19 O -0.53 -7.83 16.67 5.33 0.09 -7.74 16 20 C -0.17 -1.78 5.88 -104.83 -0.62 -2.40 16 21 C 0.22 2.28 10.73 -17.09 -0.18 2.10 16 22 N -0.46 -5.60 10.39 -12.28 -0.13 -5.73 16 23 C 0.27 3.18 7.60 -157.61 -1.20 1.98 16 24 N -0.42 -4.39 10.55 -12.39 -0.13 -4.52 16 25 C 0.11 0.67 11.21 -17.19 -0.19 0.47 16 26 C 0.07 0.41 11.22 -17.21 -0.19 0.22 16 27 N -0.40 -3.68 10.46 -10.77 -0.11 -3.79 16 28 C 0.02 0.19 6.59 -84.78 -0.56 -0.37 16 29 C -0.02 -0.24 8.66 -38.38 -0.33 -0.57 16 30 C 0.12 1.38 5.01 -2.52 -0.01 1.37 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 33 H 0.04 0.56 6.85 -51.94 -0.36 0.21 16 34 H 0.36 7.60 5.66 -40.82 -0.23 7.37 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.09 1.04 7.92 -51.93 -0.41 0.62 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.63 6.68 -51.93 -0.35 0.29 16 39 H 0.08 0.62 6.79 -51.93 -0.35 0.26 16 40 H 0.19 1.67 7.65 -52.49 -0.40 1.27 16 41 H 0.19 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.19 1.55 2.89 -54.41 -0.16 1.39 16 44 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 45 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -35.06 368.37 -9.00 -44.06 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.62 Total: 5.48 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.87 Total: 1.46 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.43 Total: -65.19 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.06 -9.00 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.585 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds