Wall clock time and date at job start Wed Apr 1 2020 00:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47126 * 2 1 4 4 N 1.46498 * 109.47526 * 120.00958 * 2 1 3 5 5 C 1.36942 * 119.99332 * 275.26937 * 4 2 1 6 6 H 1.08001 * 120.00153 * 359.73134 * 5 4 2 7 7 C 1.38817 * 119.99879 * 179.72338 * 5 4 2 8 8 N 1.31616 * 120.00233 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99680 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46990 * 90.00353 * 9 7 5 11 11 H 1.48501 * 109.47234 * 209.99453 * 9 7 5 12 12 H 1.48494 * 109.47402 * 330.00001 * 9 7 5 13 13 C 1.53008 * 109.46902 * 240.00310 * 2 1 3 14 14 H 1.08994 * 110.88882 * 291.45327 * 13 2 1 15 15 C 1.55147 * 111.00454 * 167.52325 * 13 2 1 16 16 C 1.54324 * 102.94274 * 206.42667 * 15 13 2 17 17 N 1.47019 * 107.27220 * 22.19274 * 16 15 13 18 18 C 1.34781 * 125.65331 * 181.09547 * 17 16 15 19 19 O 1.21544 * 120.00366 * 185.02473 * 18 17 16 20 20 C 1.47850 * 119.99580 * 5.02437 * 18 17 16 21 21 C 1.40600 * 120.27792 * 171.87428 * 20 18 17 22 22 N 1.30817 * 121.51744 * 179.75944 * 21 20 18 23 23 C 1.33753 * 121.79788 * 0.50686 * 22 21 20 24 24 N 1.33886 * 120.61602 * 179.74129 * 23 22 21 25 25 C 1.31340 * 119.84501 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.77504 * 359.97438 * 25 24 23 27 27 N 1.31311 * 120.55632 * 0.02562 * 26 25 24 28 28 C 1.33666 * 119.70502 * 359.95770 * 27 26 25 29 29 C 1.38906 * 120.27678 * 352.15358 * 20 18 17 30 30 C 1.47427 * 108.70414 * 1.06238 * 17 16 15 31 31 H 1.09003 * 109.47099 * 184.90907 * 1 2 3 32 32 H 1.09008 * 109.46545 * 304.90272 * 1 2 3 33 33 H 1.08988 * 109.47773 * 64.90379 * 1 2 3 34 34 H 0.96993 * 120.00611 * 94.99784 * 4 2 1 35 35 H 0.96992 * 120.00371 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72142 * 324.78688 * 15 13 2 37 37 H 1.08995 * 110.72228 * 88.06370 * 15 13 2 38 38 H 1.08999 * 109.88562 * 262.77595 * 16 15 13 39 39 H 1.09002 * 109.88709 * 141.61456 * 16 15 13 40 40 H 1.08001 * 119.23551 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.60854 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.72324 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.99847 * 359.95565 * 29 20 18 44 44 H 1.09003 * 110.36733 * 217.03626 * 30 17 16 45 45 H 1.08998 * 110.46035 * 94.75510 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1440 -0.0090 2.3770 6 1 1.8870 1.0388 2.4256 7 6 2.6013 -0.6649 3.5118 8 7 2.7215 -0.0099 4.6470 9 14 3.0461 -2.4772 3.4275 10 1 4.4806 -2.6187 3.0704 11 1 2.8004 -3.1092 4.7487 12 1 2.2112 -3.1445 2.3966 13 6 2.0400 -0.7212 -1.2494 14 1 1.8184 -1.7873 -1.2004 15 6 3.5586 -0.4767 -1.4517 16 6 3.7353 -0.6419 -2.9759 17 7 2.4216 -0.4129 -3.5949 18 6 2.1507 -0.4867 -4.9132 19 8 1.0466 -0.1882 -5.3244 20 6 3.1968 -0.9307 -5.8590 21 6 2.8772 -1.1738 -7.2064 22 7 3.7844 -1.5628 -8.0649 23 6 5.0575 -1.7587 -7.7048 24 7 5.9656 -2.1621 -8.6021 25 6 7.2116 -2.3502 -8.2319 26 6 7.6048 -2.1338 -6.9083 27 7 6.7333 -1.7381 -6.0093 28 6 5.4598 -1.5399 -6.3635 29 6 4.5023 -1.1167 -5.4225 30 6 1.4493 -0.0899 -2.5348 31 1 -0.3633 -1.0239 0.0879 32 1 -0.3633 0.5881 0.8429 33 1 -0.3634 0.4358 -0.9305 34 1 2.2491 -1.6319 1.1524 35 1 3.0414 -0.4680 5.4398 36 1 3.8321 0.5310 -1.1388 37 1 4.1443 -1.2213 -0.9127 38 1 4.0808 -1.6507 -3.2019 39 1 4.4528 0.0897 -3.3474 40 1 1.8603 -1.0320 -7.5412 41 1 7.9409 -2.6760 -8.9587 42 1 8.6338 -2.2942 -6.6223 43 1 4.7747 -0.9410 -4.3924 44 1 0.4790 -0.5311 -2.7628 45 1 1.3565 0.9899 -2.4191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672210933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:56 Heat of formation + Delta-G solvation = 69.923301 kcal Electronic energy + Delta-G solvation = -28799.454429 eV Core-core repulsion = 24817.866937 eV Total energy + Delta-G solvation = -3981.587491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.90536 -41.48236 -39.62283 -38.80167 -37.10610 -36.20163 -34.47955 -33.43954 -32.37397 -31.94905 -31.23462 -29.01104 -27.46645 -26.54475 -25.83162 -24.61524 -24.09997 -22.70316 -21.84705 -21.26227 -20.53581 -19.53883 -19.26354 -18.43729 -17.93920 -17.43124 -16.92344 -16.61001 -16.53091 -16.31527 -15.91981 -15.67891 -15.15685 -15.05827 -14.90578 -14.68617 -14.30091 -14.13641 -13.89644 -13.87557 -13.74314 -13.49382 -13.44173 -13.04272 -12.91582 -12.84816 -12.70201 -12.37381 -12.01652 -11.97528 -11.88408 -11.71135 -11.67130 -11.37194 -11.26990 -10.92740 -10.61732 -10.36736 -9.90889 -9.83496 -9.27245 -7.96708 -5.29435 -1.29243 -0.93571 0.51067 1.17208 1.41418 1.44889 1.52120 1.64053 1.94836 2.37465 2.53228 2.71293 2.80930 2.85355 3.18818 3.34934 3.35969 3.43943 3.52256 3.61312 3.73636 3.79916 3.95079 4.05491 4.15287 4.17808 4.27574 4.33305 4.40402 4.51194 4.56303 4.61463 4.69430 4.78506 4.85490 4.92563 4.99504 5.08135 5.15104 5.24157 5.27898 5.37582 5.58468 5.79076 5.84025 6.22364 6.27187 6.30754 6.72051 6.82230 7.14255 7.90273 8.09260 9.25067 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002524 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.893545 B =11090.791988 C =12479.927938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.187 3.813 3 H 0.051 0.949 4 N -0.746 5.746 5 C -0.219 4.219 6 H 0.056 0.944 7 C -0.067 4.067 8 N -0.988 5.988 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.305 1.305 12 H -0.251 1.251 13 C -0.098 4.098 14 H 0.088 0.912 15 C -0.120 4.120 16 C 0.084 3.916 17 N -0.605 5.605 18 C 0.581 3.419 19 O -0.561 6.561 20 C -0.177 4.177 21 C 0.209 3.791 22 N -0.485 5.485 23 C 0.248 3.752 24 N -0.461 5.461 25 C 0.132 3.868 26 C 0.090 3.910 27 N -0.427 5.427 28 C 0.003 3.997 29 C -0.014 4.014 30 C 0.119 3.881 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.365 0.635 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.192 0.808 41 H 0.233 0.767 42 H 0.234 0.766 43 H 0.204 0.796 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.323 -5.950 -27.033 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.078 3.922 3 H 0.069 0.931 4 N -0.390 5.390 5 C -0.350 4.350 6 H 0.074 0.926 7 C -0.258 4.258 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.232 1.232 12 H -0.176 1.176 13 C -0.118 4.118 14 H 0.106 0.894 15 C -0.158 4.158 16 C -0.038 4.038 17 N -0.337 5.337 18 C 0.370 3.630 19 O -0.441 6.441 20 C -0.184 4.184 21 C 0.033 3.967 22 N -0.194 5.194 23 C 0.009 3.991 24 N -0.176 5.176 25 C -0.047 4.047 26 C -0.087 4.087 27 N -0.141 5.141 28 C -0.122 4.122 29 C -0.040 4.040 30 C -0.003 4.003 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.209 0.791 41 H 0.249 0.751 42 H 0.250 0.750 43 H 0.220 0.780 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.317 -5.712 -28.043 30.421 hybrid contribution 0.146 -0.652 1.480 1.624 sum 10.463 -6.364 -26.562 29.250 Atomic orbital electron populations 1.22396 0.97896 1.01226 1.00844 1.20273 0.92445 0.95171 0.84270 0.93098 1.42723 1.80004 1.09528 1.06707 1.18977 1.34541 0.94286 0.87234 0.92625 1.25470 1.02773 1.02367 0.95181 1.69884 1.55171 1.37726 1.01087 0.85440 0.78794 0.80952 0.76733 1.20036 1.23235 1.17608 1.22518 0.95887 1.00654 0.92739 0.89400 1.22687 0.95712 1.04120 0.93246 1.22823 0.84513 1.02595 0.93838 1.48427 1.12412 1.67787 1.05066 1.17596 0.86774 0.77810 0.80856 1.90797 1.24633 1.51197 1.77459 1.20938 0.94533 1.06639 0.96261 1.23427 0.99397 0.86889 0.87031 1.67579 1.00392 1.14303 1.37148 1.20429 0.92435 0.96654 0.89535 1.68403 1.03028 1.10763 1.35432 1.25293 0.92034 0.89624 0.97786 1.25169 1.02201 0.91486 0.89867 1.68696 1.00104 1.08481 1.36830 1.20289 0.94234 1.03803 0.93838 1.23562 0.89800 0.88014 1.02625 1.22300 0.92508 1.00817 0.84675 0.93280 0.94929 0.91005 0.80127 0.93591 0.90093 0.89069 0.88648 0.88202 0.79149 0.75053 0.75026 0.77964 0.90089 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.30 71.98 0.67 -4.43 16 2 C 0.19 6.06 2.48 44.99 0.11 6.17 16 3 H 0.05 1.76 7.92 -2.39 -0.02 1.74 16 4 N -0.75 -31.16 4.87 -322.93 -1.57 -32.73 16 5 C -0.22 -11.71 10.41 84.03 0.87 -10.84 16 6 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 7 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 8 N -0.99 -61.85 13.97 21.65 0.30 -61.54 16 9 Si 0.95 43.35 27.74 68.60 1.90 45.26 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.25 -10.21 6.52 99.48 0.65 -9.56 16 13 C -0.10 -2.36 2.69 -9.40 -0.03 -2.39 16 14 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.12 -2.46 6.36 31.78 0.20 -2.25 16 16 C 0.08 1.33 4.87 86.73 0.42 1.75 16 17 N -0.61 -12.56 3.33 -819.84 -2.73 -15.29 16 18 C 0.58 13.68 7.81 86.79 0.68 14.36 16 19 O -0.56 -16.64 16.67 -3.85 -0.06 -16.71 16 20 C -0.18 -3.62 5.88 -20.00 -0.12 -3.74 16 21 C 0.21 4.53 10.73 85.42 0.92 5.45 16 22 N -0.49 -12.00 10.39 -192.75 -2.00 -14.01 16 23 C 0.25 5.64 7.60 134.96 1.03 6.67 16 24 N -0.46 -8.84 10.55 -193.11 -2.04 -10.87 16 25 C 0.13 1.04 11.21 85.13 0.95 2.00 16 26 C 0.09 0.62 11.22 85.14 0.96 1.57 16 27 N -0.43 -6.44 10.46 -187.98 -1.97 -8.40 16 28 C 0.00 0.06 6.59 40.34 0.27 0.32 16 29 C -0.01 -0.24 8.66 23.05 0.20 -0.04 16 30 C 0.12 2.66 5.01 86.86 0.43 3.10 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.81 6.85 -2.39 -0.02 1.79 16 34 H 0.37 14.59 5.66 -92.71 -0.52 14.07 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.08 1.78 7.92 -2.39 -0.02 1.76 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.10 1.24 6.68 -2.39 -0.02 1.22 16 39 H 0.10 1.24 6.79 -2.39 -0.02 1.22 16 40 H 0.19 3.63 7.65 -2.91 -0.02 3.61 16 41 H 0.23 -0.64 8.06 -2.91 -0.02 -0.67 16 42 H 0.23 -0.83 8.06 -2.91 -0.02 -0.85 16 43 H 0.20 2.79 2.89 -4.72 -0.01 2.77 16 44 H 0.08 1.88 7.90 -2.39 -0.02 1.86 16 45 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -80.18 368.37 0.33 -79.85 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.46 Total: 20.07 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 8.04 Total: 14.37 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -10.00 Total: -142.84 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.06 Total: -16.71 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.26 kcal Total: -80.18 0.33 -79.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.772 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds