Wall clock time and date at job start Wed Apr 1 2020 00:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.50696 * 109.47195 * 120.00404 * 2 1 3 5 5 O 1.21284 * 119.99670 * 119.99841 * 4 2 1 6 6 N 1.34774 * 120.00049 * 299.99833 * 4 2 1 7 7 C 1.46498 * 119.99856 * 180.02562 * 6 4 2 8 8 C 1.50707 * 109.47025 * 180.02562 * 7 6 4 9 9 C 1.38259 * 120.01597 * 270.20932 * 8 7 6 10 10 C 1.38143 * 119.95882 * 180.23398 * 9 8 7 11 11 C 1.38447 * 120.10410 * 359.53063 * 10 9 8 12 12 C 1.38069 * 119.93310 * 0.25858 * 11 10 9 13 13 C 1.38136 * 120.02018 * 89.99790 * 8 7 6 14 14 C 1.50779 * 108.86093 * 179.97438 * 12 11 10 15 15 N 1.46639 * 107.69865 * 0.02562 * 14 12 11 16 16 C 1.36939 * 126.56165 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99850 * 354.40802 * 16 15 14 18 18 C 1.38806 * 120.00365 * 174.40699 * 16 15 14 19 19 N 1.31624 * 119.99614 * 6.82208 * 18 16 15 20 20 Si 1.86803 * 120.00564 * 186.81824 * 18 16 15 21 21 H 1.48500 * 109.46838 * 94.98372 * 20 18 16 22 22 H 1.48496 * 109.47362 * 214.98638 * 20 18 16 23 23 H 1.48504 * 109.46891 * 334.99079 * 20 18 16 24 24 C 1.46629 * 106.87528 * 359.97438 * 15 14 12 25 25 N 1.46505 * 109.46984 * 240.00404 * 2 1 3 26 26 C 1.34430 * 126.82002 * 324.71009 * 25 2 1 27 27 N 1.30836 * 108.07858 * 179.89472 * 26 25 2 28 28 C 1.33250 * 109.82392 * 0.37965 * 27 26 25 29 29 N 1.30713 * 108.94856 * 359.76378 * 28 27 26 30 30 H 1.09010 * 109.46802 * 300.00019 * 1 2 3 31 31 H 1.08998 * 109.47504 * 59.99414 * 1 2 3 32 32 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00109 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47737 * 59.99570 * 7 6 4 35 35 H 1.09002 * 109.47514 * 299.99497 * 7 6 4 36 36 H 1.07996 * 120.01955 * 0.04401 * 9 8 7 37 37 H 1.07997 * 119.94915 * 179.81028 * 10 9 8 38 38 H 1.07997 * 119.95299 * 0.02562 * 13 8 7 39 39 H 1.08997 * 109.81330 * 119.54088 * 14 12 11 40 40 H 1.08994 * 109.81611 * 240.45389 * 14 12 11 41 41 H 0.96999 * 119.99655 * 179.97438 * 19 18 16 42 42 H 1.09008 * 109.81276 * 240.45501 * 24 15 14 43 43 H 1.09005 * 109.81476 * 119.55233 * 24 15 14 44 44 H 1.07999 * 125.96431 * 0.03659 * 26 25 2 45 45 H 1.07995 * 125.52061 * 179.80154 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1189 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.6927 -0.2306 4.8812 9 6 2.4368 0.7901 5.4435 10 6 1.9770 1.4368 6.5743 11 6 0.7674 1.0710 7.1399 12 6 0.0223 0.0547 6.5758 13 6 0.4860 -0.5963 5.4453 14 6 -1.2355 -0.1347 7.3854 15 7 -1.2091 0.8364 8.4838 16 6 -2.1637 0.9989 9.4521 17 1 -3.0853 0.4379 9.4014 18 6 -1.9470 1.8843 10.4989 19 7 -0.8876 2.6654 10.4914 20 14 -3.1587 1.9675 11.9182 21 1 -2.6856 1.0970 13.0245 22 1 -3.2614 3.3684 12.3999 23 1 -4.4921 1.5029 11.4585 24 6 0.0356 1.5995 8.3476 25 7 2.0183 -0.6906 -1.1963 26 6 1.4587 -1.7551 -1.7969 27 7 2.1939 -2.0702 -2.8322 28 6 3.2312 -1.2384 -2.9197 29 7 3.1674 -0.3757 -1.9399 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1494 0.5388 2.5436 34 1 3.2856 -0.9402 3.6504 35 1 1.8326 -1.9683 3.6508 36 1 3.3783 1.0795 5.0007 37 1 2.5598 2.2319 7.0152 38 1 -0.0965 -1.3915 5.0042 39 1 -2.1090 0.0419 6.7577 40 1 -1.2671 -1.1472 7.7877 41 1 -0.7363 3.2845 11.2227 42 1 0.6493 1.4675 9.2388 43 1 -0.1923 2.6563 8.2081 44 1 0.5579 -2.2605 -1.4813 45 1 3.9997 -1.2715 -3.6778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673761597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:12 Heat of formation + Delta-G solvation = 120.348544 kcal Electronic energy + Delta-G solvation = -28023.652020 eV Core-core repulsion = 24044.251131 eV Total energy + Delta-G solvation = -3979.400889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43169 -40.31285 -39.58864 -36.56051 -35.43925 -34.75702 -32.38835 -31.69645 -31.36341 -30.44719 -29.70773 -27.63113 -26.21975 -25.62218 -24.49669 -22.53087 -22.17437 -22.09202 -20.68451 -20.52269 -20.19211 -18.23170 -17.52048 -17.10534 -16.21955 -16.01017 -15.68289 -15.47981 -15.25495 -14.84331 -14.62262 -14.53082 -14.40688 -14.26958 -14.08555 -13.43130 -13.20133 -13.12716 -13.11498 -12.80924 -12.53244 -12.07099 -11.96130 -11.92198 -11.79023 -11.65865 -11.15899 -10.91530 -10.77953 -10.58453 -10.33293 -10.31071 -10.20630 -10.04850 -9.89050 -9.87439 -9.46456 -9.01218 -8.53755 -8.12811 -6.93799 -5.90603 -3.23149 1.21940 1.47086 1.62912 1.79982 2.09271 2.70311 2.89321 3.32191 3.37381 3.39492 3.84892 3.97547 4.01497 4.15491 4.24919 4.33608 4.47949 4.58224 4.80015 4.83624 4.86684 5.00640 5.13321 5.19561 5.30640 5.33437 5.38323 5.47554 5.51085 5.74117 5.88526 5.91327 5.98322 5.99483 6.12989 6.38381 6.40468 6.43363 6.46447 6.64587 6.66442 6.94584 7.04453 7.22466 7.23988 7.44203 7.60955 7.70781 7.78236 8.05000 9.02949 9.63113 10.29941 11.23812 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.001819 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.747596 B =15385.396366 C =15766.100391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.133 0.867 4 C 0.501 3.499 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.171 3.829 8 C -0.135 4.135 9 C -0.102 4.102 10 C -0.112 4.112 11 C -0.078 4.078 12 C -0.106 4.106 13 C -0.083 4.083 14 C 0.175 3.825 15 N -0.600 5.600 16 C -0.229 4.229 17 H 0.084 0.916 18 C -0.005 4.005 19 N -0.921 5.921 20 Si 0.917 3.083 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.204 3.796 25 N -0.363 5.363 26 C 0.270 3.730 27 N -0.546 5.546 28 C 0.200 3.800 29 N -0.314 5.314 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.405 0.595 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.215 0.785 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -3.866 -21.388 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.150 0.850 4 C 0.284 3.716 5 O -0.399 6.399 6 N -0.367 5.367 7 C 0.049 3.951 8 C -0.135 4.135 9 C -0.121 4.121 10 C -0.130 4.130 11 C -0.079 4.079 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.050 3.950 15 N -0.327 5.327 16 C -0.356 4.356 17 H 0.102 0.898 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.747 3.253 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.079 3.921 25 N -0.153 5.153 26 C -0.027 4.027 27 N -0.273 5.273 28 C -0.103 4.103 29 N -0.141 5.141 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.231 0.769 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.419 -4.116 -21.304 22.364 hybrid contribution -0.881 0.451 1.109 1.486 sum 4.538 -3.665 -20.195 21.021 Atomic orbital electron populations 1.22208 0.89819 1.04740 1.05401 1.21221 0.96537 0.98088 0.80992 0.84967 1.20583 0.81122 0.85214 0.84680 1.90793 1.36916 1.25798 1.86417 1.46110 1.53452 1.32259 1.04908 1.20151 0.99113 0.95373 0.80467 1.19414 0.96477 0.99679 0.97964 1.20832 0.99324 0.95823 0.96129 1.20514 0.95643 1.00734 0.96138 1.21567 0.93747 0.95107 0.97523 1.20741 0.97928 0.96628 0.95393 1.20290 0.95156 0.99538 0.95193 1.19710 0.91948 0.94207 0.89158 1.43951 1.21271 1.37932 1.29526 1.18980 0.96018 1.21286 0.99327 0.89804 1.24861 0.98191 0.98451 0.98690 1.69932 1.28585 1.25459 1.32762 0.86025 0.79954 0.77055 0.82292 1.21412 1.21612 1.20457 1.19768 0.86489 0.95303 0.90510 1.50065 1.19188 1.24434 1.21650 1.25908 0.99195 0.87778 0.89797 1.70582 1.07267 1.28757 1.20705 1.26000 0.97199 0.90069 0.97056 1.78054 1.02602 1.25310 1.08123 0.88616 0.89801 0.90551 0.75979 0.90644 0.90568 0.86305 0.86047 0.86497 0.94646 0.94493 0.93407 0.91506 0.91971 0.76869 0.76627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 8.75 37.16 0.33 -0.25 16 2 C 0.14 0.96 3.77 -69.08 -0.26 0.70 16 3 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.50 4.80 7.22 -10.99 -0.08 4.72 16 5 O -0.52 -7.45 16.42 5.55 0.09 -7.36 16 6 N -0.71 -5.84 5.44 -61.47 -0.33 -6.17 16 7 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 8 C -0.13 -1.60 5.25 -104.65 -0.55 -2.14 16 9 C -0.10 -1.28 9.70 -39.61 -0.38 -1.66 16 10 C -0.11 -1.70 10.05 -39.54 -0.40 -2.10 16 11 C -0.08 -1.46 6.22 -104.57 -0.65 -2.11 16 12 C -0.11 -1.86 6.22 -104.57 -0.65 -2.51 16 13 C -0.08 -1.12 9.70 -39.54 -0.38 -1.51 16 14 C 0.18 3.53 7.25 -5.08 -0.04 3.50 16 15 N -0.60 -14.90 3.41 -175.67 -0.60 -15.50 16 16 C -0.23 -6.13 10.31 -15.06 -0.16 -6.28 16 17 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 18 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 19 N -0.92 -25.89 10.49 55.49 0.58 -25.31 16 20 Si 0.92 21.20 29.56 -169.99 -5.02 16.18 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.20 4.77 5.40 -5.09 -0.03 4.74 16 25 N -0.36 -3.50 3.04 -57.24 -0.17 -3.67 16 26 C 0.27 2.46 11.76 -90.65 -1.07 1.39 16 27 N -0.55 -5.99 11.19 -15.83 -0.18 -6.16 16 28 C 0.20 2.04 13.03 -91.81 -1.20 0.84 16 29 N -0.31 -3.62 12.70 29.29 0.37 -3.25 16 30 H 0.10 0.21 7.57 -51.92 -0.39 -0.18 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.24 7.23 -51.93 -0.38 -0.13 16 33 H 0.41 2.48 7.88 -40.82 -0.32 2.16 16 34 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 42 H 0.07 1.73 7.38 -51.92 -0.38 1.35 16 43 H 0.06 1.59 7.62 -51.93 -0.40 1.20 16 44 H 0.22 1.12 7.33 -52.49 -0.38 0.74 16 45 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -35.11 381.60 -11.17 -46.29 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.02 Total: 0.43 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -5.64 Total: -1.22 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.33 Total: -60.07 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.11 -11.17 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673761597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.634 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds