Wall clock time and date at job start Wed Apr 1 2020 00:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.50696 * 109.47195 * 120.00404 * 2 1 3 5 5 O 1.21284 * 119.99670 * 119.99841 * 4 2 1 6 6 N 1.34774 * 120.00049 * 299.99833 * 4 2 1 7 7 C 1.46498 * 119.99856 * 180.02562 * 6 4 2 8 8 C 1.50707 * 109.47025 * 180.02562 * 7 6 4 9 9 C 1.38259 * 120.01597 * 270.20932 * 8 7 6 10 10 C 1.38143 * 119.95882 * 180.23398 * 9 8 7 11 11 C 1.38447 * 120.10410 * 359.53063 * 10 9 8 12 12 C 1.38069 * 119.93310 * 0.25858 * 11 10 9 13 13 C 1.38136 * 120.02018 * 89.99790 * 8 7 6 14 14 C 1.50779 * 108.86093 * 179.97438 * 12 11 10 15 15 N 1.46639 * 107.69865 * 0.02562 * 14 12 11 16 16 C 1.36939 * 126.56165 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99850 * 354.40802 * 16 15 14 18 18 C 1.38806 * 120.00365 * 174.40699 * 16 15 14 19 19 N 1.31624 * 119.99614 * 6.82208 * 18 16 15 20 20 Si 1.86803 * 120.00564 * 186.81824 * 18 16 15 21 21 H 1.48500 * 109.46838 * 94.98372 * 20 18 16 22 22 H 1.48496 * 109.47362 * 214.98638 * 20 18 16 23 23 H 1.48504 * 109.46891 * 334.99079 * 20 18 16 24 24 C 1.46629 * 106.87528 * 359.97438 * 15 14 12 25 25 N 1.46505 * 109.46984 * 240.00404 * 2 1 3 26 26 C 1.34430 * 126.82002 * 324.71009 * 25 2 1 27 27 N 1.30836 * 108.07858 * 179.89472 * 26 25 2 28 28 C 1.33250 * 109.82392 * 0.37965 * 27 26 25 29 29 N 1.30713 * 108.94856 * 359.76378 * 28 27 26 30 30 H 1.09010 * 109.46802 * 300.00019 * 1 2 3 31 31 H 1.08998 * 109.47504 * 59.99414 * 1 2 3 32 32 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00109 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47737 * 59.99570 * 7 6 4 35 35 H 1.09002 * 109.47514 * 299.99497 * 7 6 4 36 36 H 1.07996 * 120.01955 * 0.04401 * 9 8 7 37 37 H 1.07997 * 119.94915 * 179.81028 * 10 9 8 38 38 H 1.07997 * 119.95299 * 0.02562 * 13 8 7 39 39 H 1.08997 * 109.81330 * 119.54088 * 14 12 11 40 40 H 1.08994 * 109.81611 * 240.45389 * 14 12 11 41 41 H 0.96999 * 119.99655 * 179.97438 * 19 18 16 42 42 H 1.09008 * 109.81276 * 240.45501 * 24 15 14 43 43 H 1.09005 * 109.81476 * 119.55233 * 24 15 14 44 44 H 1.07999 * 125.96431 * 0.03659 * 26 25 2 45 45 H 1.07995 * 125.52061 * 179.80154 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1189 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.6927 -0.2306 4.8812 9 6 2.4368 0.7901 5.4435 10 6 1.9770 1.4368 6.5743 11 6 0.7674 1.0710 7.1399 12 6 0.0223 0.0547 6.5758 13 6 0.4860 -0.5963 5.4453 14 6 -1.2355 -0.1347 7.3854 15 7 -1.2091 0.8364 8.4838 16 6 -2.1637 0.9989 9.4521 17 1 -3.0853 0.4379 9.4014 18 6 -1.9470 1.8843 10.4989 19 7 -0.8876 2.6654 10.4914 20 14 -3.1587 1.9675 11.9182 21 1 -2.6856 1.0970 13.0245 22 1 -3.2614 3.3684 12.3999 23 1 -4.4921 1.5029 11.4585 24 6 0.0356 1.5995 8.3476 25 7 2.0183 -0.6906 -1.1963 26 6 1.4587 -1.7551 -1.7969 27 7 2.1939 -2.0702 -2.8322 28 6 3.2312 -1.2384 -2.9197 29 7 3.1674 -0.3757 -1.9399 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1494 0.5388 2.5436 34 1 3.2856 -0.9402 3.6504 35 1 1.8326 -1.9683 3.6508 36 1 3.3783 1.0795 5.0007 37 1 2.5598 2.2319 7.0152 38 1 -0.0965 -1.3915 5.0042 39 1 -2.1090 0.0419 6.7577 40 1 -1.2671 -1.1472 7.7877 41 1 -0.7363 3.2845 11.2227 42 1 0.6493 1.4675 9.2388 43 1 -0.1923 2.6563 8.2081 44 1 0.5579 -2.2605 -1.4813 45 1 3.9997 -1.2715 -3.6778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673761597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:11 Heat of formation + Delta-G solvation = 98.877416 kcal Electronic energy + Delta-G solvation = -28024.583078 eV Core-core repulsion = 24044.251131 eV Total energy + Delta-G solvation = -3980.331947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.10628 -41.29622 -40.69652 -37.92857 -36.06083 -35.85580 -34.11288 -32.61811 -32.31849 -31.54306 -30.83076 -28.95234 -27.70831 -26.52191 -25.59586 -23.65919 -23.18172 -22.83354 -22.10178 -21.52070 -21.21420 -19.00064 -18.96694 -18.15087 -17.22211 -16.94654 -16.73961 -16.44186 -16.18749 -16.05916 -16.02990 -15.79384 -15.42307 -15.24316 -14.99404 -14.73781 -14.49678 -13.95035 -13.53562 -13.46523 -13.42811 -13.39147 -13.29604 -13.27861 -13.07303 -13.03085 -12.72001 -12.48455 -12.08603 -11.99247 -11.83632 -11.64821 -11.54243 -11.05044 -10.92194 -10.78822 -10.57914 -10.23462 -9.72061 -9.58687 -8.84379 -7.95182 -5.30659 0.23257 0.45320 0.61441 1.20521 1.38677 1.46018 1.48385 1.57314 1.99570 2.15468 2.44326 2.82273 3.27465 3.37201 3.45419 3.47201 3.53978 3.58237 3.79282 3.79992 3.96942 3.97906 4.14068 4.27140 4.32866 4.50520 4.60540 4.63573 4.68152 4.72842 4.77915 4.85737 4.97568 5.08023 5.17884 5.22498 5.26919 5.27650 5.33992 5.44883 5.46098 5.52452 5.55839 5.80237 5.86828 6.04135 6.09817 6.38204 7.00029 7.02785 7.09273 7.65458 8.33282 9.18349 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.001819 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.747596 B =15385.396366 C =15766.100391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.146 0.854 4 C 0.505 3.495 5 O -0.573 6.573 6 N -0.702 5.702 7 C 0.177 3.823 8 C -0.108 4.108 9 C -0.088 4.088 10 C -0.112 4.112 11 C -0.110 4.110 12 C -0.116 4.116 13 C -0.071 4.071 14 C 0.171 3.829 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.091 0.909 18 C -0.063 4.063 19 N -0.951 5.951 20 Si 0.985 3.015 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.264 1.264 24 C 0.219 3.781 25 N -0.368 5.368 26 C 0.269 3.731 27 N -0.575 5.575 28 C 0.194 3.806 29 N -0.349 5.349 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.418 0.582 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.250 0.750 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.247 0.753 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -4.808 -23.485 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.163 0.837 4 C 0.290 3.710 5 O -0.451 6.451 6 N -0.354 5.354 7 C 0.054 3.946 8 C -0.109 4.109 9 C -0.107 4.107 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.116 4.116 13 C -0.090 4.090 14 C 0.046 3.954 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.109 0.891 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.812 3.188 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.188 1.188 24 C 0.094 3.906 25 N -0.158 5.158 26 C -0.027 4.027 27 N -0.303 5.303 28 C -0.109 4.109 29 N -0.176 5.176 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.263 0.737 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.007 -5.046 -23.413 24.468 hybrid contribution -0.708 0.689 1.658 1.930 sum 4.299 -4.357 -21.755 22.600 Atomic orbital electron populations 1.22276 0.86958 1.05633 1.06787 1.21475 0.98536 0.97828 0.78821 0.83654 1.20982 0.80074 0.84460 0.85459 1.90783 1.39180 1.28085 1.87077 1.45916 1.53104 1.32341 1.04068 1.20033 0.99189 0.95378 0.79987 1.19576 0.95138 0.98355 0.97798 1.21143 1.00183 0.94818 0.94507 1.20670 0.94358 1.01150 0.96857 1.21173 0.95818 0.97116 0.97032 1.20585 0.96777 0.97431 0.96829 1.20501 0.95709 0.99300 0.93457 1.19820 0.94019 0.93090 0.88441 1.44251 1.21233 1.39188 1.30420 1.19400 0.96807 1.20982 1.00027 0.89101 1.25758 1.00205 0.98459 1.01248 1.70162 1.30442 1.26137 1.33143 0.84970 0.78430 0.76554 0.78828 1.21377 1.21981 1.18798 1.19293 0.86203 0.93618 0.91480 1.50238 1.18723 1.24753 1.22088 1.26565 0.99663 0.87385 0.89106 1.70585 1.08062 1.29658 1.21993 1.26569 0.97546 0.89511 0.97281 1.77970 1.04033 1.26493 1.09056 0.86802 0.88821 0.89928 0.74412 0.90509 0.90198 0.83036 0.85397 0.83697 0.93673 0.94166 0.94042 0.95855 0.95992 0.73716 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.75 71.98 0.63 0.12 16 2 C 0.14 1.51 3.77 44.24 0.17 1.67 16 3 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.51 8.15 7.22 87.66 0.63 8.78 16 5 O -0.57 -15.05 16.42 -3.04 -0.05 -15.10 16 6 N -0.70 -8.62 5.44 -466.78 -2.54 -11.16 16 7 C 0.18 2.82 5.80 85.64 0.50 3.32 16 8 C -0.11 -2.13 5.25 -19.88 -0.10 -2.23 16 9 C -0.09 -1.89 9.70 22.25 0.22 -1.68 16 10 C -0.11 -3.28 10.05 22.30 0.22 -3.06 16 11 C -0.11 -4.19 6.22 -19.83 -0.12 -4.31 16 12 C -0.12 -3.92 6.22 -19.83 -0.12 -4.05 16 13 C -0.07 -1.69 9.70 22.29 0.22 -1.47 16 14 C 0.17 6.91 7.25 85.63 0.62 7.53 16 15 N -0.62 -32.26 3.41 -709.71 -2.42 -34.67 16 16 C -0.24 -13.49 10.31 84.03 0.87 -12.62 16 17 H 0.09 4.72 7.84 -2.91 -0.02 4.70 16 18 C -0.06 -3.54 5.48 84.86 0.47 -3.08 16 19 N -0.95 -56.39 10.49 21.65 0.23 -56.16 16 20 Si 0.98 44.60 29.56 68.60 2.03 46.63 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 C 0.22 10.95 5.40 85.63 0.46 11.42 16 25 N -0.37 -6.36 3.04 -335.02 -1.02 -7.37 16 26 C 0.27 4.37 11.76 180.36 2.12 6.49 16 27 N -0.58 -11.91 11.19 -204.00 -2.28 -14.19 16 28 C 0.19 3.76 13.03 180.76 2.36 6.12 16 29 N -0.35 -7.62 12.70 -61.24 -0.78 -8.40 16 30 H 0.11 -0.01 7.57 -2.38 -0.02 -0.03 16 31 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.08 0.20 7.23 -2.39 -0.02 0.18 16 33 H 0.42 3.19 7.88 -92.71 -0.73 2.45 16 34 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.02 1.33 7.38 -2.38 -0.02 1.31 16 43 H 0.02 1.23 7.62 -2.38 -0.02 1.21 16 44 H 0.25 1.88 7.33 -2.91 -0.02 1.86 16 45 H 0.24 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -81.53 381.60 2.59 -78.94 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.29 Total: 8.53 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 9.12 Total: 12.95 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -8.81 Total: -131.96 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -81.53 2.59 -78.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673761597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.822 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds