Wall clock time and date at job start Wed Apr 1 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.50698 * 109.47108 * 119.99940 * 2 1 3 5 5 N 1.34777 * 120.00263 * 300.00282 * 4 2 1 6 6 O 1.21280 * 120.00357 * 119.99697 * 4 2 1 7 7 N 1.46897 * 109.47181 * 239.99937 * 2 1 3 8 8 C 1.46520 * 111.00054 * 48.88500 * 7 2 1 9 9 C 1.53406 * 109.27160 * 186.71961 * 8 7 2 10 10 C 1.52983 * 109.23424 * 297.03834 * 9 8 7 11 11 H 1.08999 * 111.21057 * 286.66511 * 10 9 8 12 12 C 1.54694 * 107.55370 * 164.48166 * 10 9 8 13 13 N 1.46916 * 107.33063 * 262.32106 * 12 10 9 14 14 C 1.34783 * 125.40113 * 178.36842 * 13 12 10 15 15 O 1.21276 * 119.99935 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99813 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99989 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00102 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99795 * 0.02562 * 20 18 17 23 23 H 1.48510 * 109.47168 * 90.00180 * 22 20 18 24 24 H 1.48501 * 109.47127 * 209.99640 * 22 20 18 25 25 H 1.48498 * 109.47513 * 330.00000 * 22 20 18 26 26 C 1.47192 * 109.19947 * 358.63507 * 13 12 10 27 27 C 1.53072 * 111.73891 * 51.69718 * 10 9 8 28 28 H 1.09000 * 108.24530 * 198.27475 * 27 10 9 29 29 C 1.45296 * 111.00238 * 174.99855 * 7 2 1 30 30 H 1.08999 * 109.46862 * 59.99658 * 1 2 3 31 31 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46941 * 300.00084 * 1 2 3 33 33 H 0.97004 * 119.99973 * 359.97438 * 5 4 2 34 34 H 0.96999 * 120.00496 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.61703 * 306.72959 * 8 7 2 36 36 H 1.09003 * 109.61999 * 67.08944 * 8 7 2 37 37 H 1.08998 * 110.24364 * 176.71756 * 9 8 7 38 38 H 1.09003 * 108.94932 * 56.57121 * 9 8 7 39 39 H 1.09004 * 109.87551 * 142.88611 * 12 10 9 40 40 H 1.08998 * 109.87240 * 21.75779 * 12 10 9 41 41 H 1.08993 * 109.47043 * 300.00140 * 16 14 13 42 42 H 1.09004 * 109.47109 * 60.00141 * 16 14 13 43 43 H 0.97001 * 119.99756 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.21914 * 100.44467 * 26 13 12 45 45 H 1.09003 * 110.22335 * 222.38049 * 26 13 12 46 46 H 1.09002 * 108.29092 * 64.30295 * 29 7 2 47 47 H 1.08998 * 108.14875 * 307.28120 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7067 -0.2500 2.4546 6 8 2.7295 -1.6965 1.1193 7 7 2.0197 -0.6925 -1.1994 8 6 1.3467 -0.1975 -2.4031 9 6 1.7608 -1.0569 -3.6044 10 6 3.2663 -0.9103 -3.8338 11 1 3.5071 0.0629 -4.2616 12 6 3.7103 -2.0615 -4.7669 13 7 4.2592 -3.1268 -3.9170 14 6 4.7246 -4.3134 -4.3552 15 8 5.1573 -5.1245 -3.5642 16 6 4.7074 -4.6321 -5.8280 17 16 5.3929 -6.2857 -6.0955 18 6 5.2562 -6.3937 -7.8488 19 1 4.8422 -5.5691 -8.4100 20 6 5.6815 -7.5382 -8.5090 21 7 5.5789 -7.6191 -9.8187 22 14 6.3983 -8.9643 -7.5384 23 1 5.3087 -9.8947 -7.1479 24 1 7.3884 -9.6861 -8.3774 25 1 7.0676 -8.4460 -6.3183 26 6 4.2143 -2.6953 -2.5105 27 6 4.0627 -1.1665 -2.5519 28 1 5.0584 -0.7414 -2.6781 29 6 3.4672 -0.6103 -1.2936 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.1493 0.5389 2.5436 34 1 2.0297 -0.7074 3.2466 35 1 0.2666 -0.2561 -2.2687 36 1 1.6371 0.8372 -2.5855 37 1 1.2245 -0.7389 -4.4984 38 1 1.5257 -2.0997 -3.3914 39 1 4.4762 -1.7056 -5.4559 40 1 2.8529 -2.4376 -5.3251 41 1 3.6815 -4.5999 -6.1947 42 1 5.3086 -3.8987 -6.3655 43 1 5.8758 -8.4191 -10.2799 44 1 3.3595 -3.1452 -2.0054 45 1 5.1394 -2.9685 -2.0028 46 1 3.8961 -1.1457 -0.4465 47 1 3.7537 0.4383 -1.2138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689212245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:41 Heat of formation + Delta-G solvation = -60.428927 kcal Electronic energy + Delta-G solvation = -27961.305123 eV Core-core repulsion = 24077.216335 eV Total energy + Delta-G solvation = -3884.088788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01775 -39.87443 -38.39535 -36.58116 -34.33971 -33.15212 -32.39142 -32.29276 -30.57084 -29.19467 -28.00204 -25.60607 -25.08692 -24.85229 -22.57355 -22.38751 -20.47521 -19.34195 -19.07007 -18.04633 -17.61618 -17.30100 -16.61831 -16.35893 -15.87486 -15.41745 -15.24111 -14.97663 -14.86381 -14.65163 -14.27290 -13.98561 -13.87807 -13.50731 -13.44445 -13.09769 -12.83222 -12.77062 -12.60756 -12.44649 -12.20579 -12.04269 -12.02912 -11.61366 -11.47716 -11.20676 -11.03475 -10.95734 -10.70659 -10.53200 -10.45421 -10.09380 -9.96018 -9.80483 -9.38975 -8.95357 -8.58494 -8.42913 -8.37209 -6.85827 -6.24355 -3.95260 2.26365 2.79642 2.89479 3.08191 3.30301 3.38176 3.47697 3.56033 3.68182 4.21342 4.29569 4.33525 4.38385 4.43297 4.46768 4.58306 4.77252 4.80493 4.92206 4.98298 5.04925 5.13021 5.14809 5.20485 5.21896 5.29738 5.32713 5.42243 5.50636 5.58953 5.62705 5.73606 5.75118 5.81153 5.87360 5.97049 6.07210 6.09407 6.18572 6.36704 6.52031 6.59535 6.83265 6.94086 7.73084 7.90420 7.98847 8.46146 8.57658 9.22162 10.84840 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002265 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.491520 B =12358.756394 C =12977.497955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.518 3.482 5 N -0.858 5.858 6 O -0.515 6.515 7 N -0.521 5.521 8 C 0.056 3.944 9 C -0.112 4.112 10 C -0.092 4.092 11 H 0.090 0.910 12 C 0.105 3.895 13 N -0.622 5.622 14 C 0.545 3.455 15 O -0.518 6.518 16 C -0.116 4.116 17 S -0.143 6.143 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.121 3.879 27 C -0.089 4.089 28 H 0.079 0.921 29 C 0.070 3.930 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 25.326 21.470 35.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.042 4.042 3 H 0.084 0.916 4 C 0.302 3.698 5 N -0.424 5.424 6 O -0.389 6.389 7 N -0.247 5.247 8 C -0.071 4.071 9 C -0.150 4.150 10 C -0.111 4.111 11 H 0.108 0.892 12 C -0.018 4.018 13 N -0.359 5.359 14 C 0.333 3.667 15 O -0.393 6.393 16 C -0.267 4.267 17 S 0.083 5.917 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.002 4.002 27 C -0.108 4.108 28 H 0.097 0.903 29 C -0.058 4.058 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.118 0.882 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.422 22.810 22.193 33.812 hybrid contribution -0.144 1.412 -0.561 1.526 sum -11.565 24.222 21.631 34.473 Atomic orbital electron populations 1.21942 0.91929 1.03930 1.02835 1.21490 0.97099 0.95876 0.89762 0.91593 1.20528 0.79901 0.84553 0.84858 1.43876 1.56470 1.33904 1.08107 1.90763 1.36529 1.25347 1.86279 1.60371 1.06067 1.57237 1.01028 1.22159 0.99255 0.96374 0.89340 1.21760 0.94455 1.01773 0.96987 1.21885 0.95778 0.98398 0.95010 0.89186 1.22188 0.98701 0.87466 0.93495 1.48330 1.63732 1.16044 1.07834 1.19944 0.76605 0.79662 0.90457 1.90706 1.45254 1.46316 1.56982 1.23247 1.05406 1.03855 0.94165 1.84801 1.81631 1.14851 1.10397 1.22316 1.48504 1.06837 0.89028 0.89426 1.24710 0.94227 0.97890 0.94519 1.69939 1.45746 1.28988 1.07133 0.86733 0.80390 0.82964 0.81767 1.19207 1.19990 1.15885 1.21882 1.02603 0.92652 0.83018 1.21039 0.99615 0.96261 0.93909 0.90262 1.21043 0.86829 0.98761 0.99133 0.90750 0.90763 0.91601 0.77301 0.76650 0.89769 0.94863 0.90617 0.90366 0.91426 0.90915 0.88687 0.88680 0.91996 0.90769 0.90944 0.88155 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.47 37.16 0.31 -0.28 16 2 C 0.07 0.43 2.52 -68.87 -0.17 0.25 16 3 H 0.07 0.30 8.01 -51.93 -0.42 -0.11 16 4 C 0.52 4.15 7.17 -10.99 -0.08 4.07 16 5 N -0.86 -3.35 8.77 31.22 0.27 -3.08 16 6 O -0.52 -6.71 15.02 5.56 0.08 -6.62 16 7 N -0.52 -4.43 4.27 -231.37 -0.99 -5.42 16 8 C 0.06 0.38 4.99 -3.82 -0.02 0.36 16 9 C -0.11 -0.89 5.10 -26.53 -0.14 -1.03 16 10 C -0.09 -0.80 3.31 -89.70 -0.30 -1.10 16 11 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 12 C 0.11 1.20 5.92 -2.92 -0.02 1.18 16 13 N -0.62 -9.63 3.33 -171.32 -0.57 -10.20 16 14 C 0.55 10.94 7.86 -10.98 -0.09 10.85 16 15 O -0.52 -12.42 16.16 5.56 0.09 -12.33 16 16 C -0.12 -2.43 5.33 36.01 0.19 -2.24 16 17 S -0.14 -3.80 18.55 -107.50 -1.99 -5.80 16 18 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 19 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 20 C 0.09 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -27.04 13.97 55.49 0.78 -26.26 16 22 Si 0.86 22.38 27.74 -169.99 -4.71 17.67 16 23 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.23 -6.16 6.74 56.52 0.38 -5.78 16 26 C 0.12 1.70 6.19 -3.31 -0.02 1.68 16 27 C -0.09 -0.90 2.75 -91.76 -0.25 -1.15 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 C 0.07 0.66 4.52 -6.22 -0.03 0.63 16 30 H 0.07 0.23 6.17 -51.93 -0.32 -0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.11 7.56 -51.93 -0.39 -0.28 16 33 H 0.40 0.28 8.25 -40.82 -0.34 -0.06 16 34 H 0.40 1.42 8.93 -40.82 -0.36 1.06 16 35 H 0.08 0.47 5.77 -51.93 -0.30 0.17 16 36 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 41 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 42 H 0.09 1.86 8.14 -51.91 -0.42 1.43 16 43 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 45 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 46 H 0.10 1.18 5.59 -51.93 -0.29 0.89 16 47 H 0.02 0.19 7.97 -51.93 -0.41 -0.22 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -38.18 380.03 -9.15 -47.34 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.45 Total: -1.97 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.39 Total: 0.95 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.51 Total: -44.96 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.99 Total: -5.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.18 -9.15 -47.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689212245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.093 kcal (2) G-P(sol) polarization free energy of solvation -38.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds