Wall clock time and date at job start Wed Apr 1 2020 00:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46653 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00182 * 2 1 3 5 5 N 1.34779 * 119.99950 * 60.00239 * 4 2 1 6 6 O 1.21277 * 119.99947 * 239.99508 * 4 2 1 7 7 N 1.46901 * 109.46871 * 119.99991 * 2 1 3 8 8 C 1.47175 * 110.99801 * 303.95301 * 7 2 1 9 9 C 1.52870 * 108.19887 * 171.12513 * 8 7 2 10 10 C 1.51193 * 111.24608 * 58.59471 * 9 8 7 11 11 H 1.08998 * 110.18173 * 186.51938 * 10 9 8 12 12 C 1.54247 * 112.16553 * 63.77091 * 10 9 8 13 13 N 1.47879 * 103.87844 * 199.26049 * 12 10 9 14 14 C 1.34769 * 125.74464 * 204.60427 * 13 12 10 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00362 * 359.95825 * 14 13 12 17 17 S 1.81001 * 109.47473 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99849 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00359 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99372 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00546 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99474 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47122 * 90.00010 * 22 20 18 24 24 H 1.48506 * 109.46825 * 209.99996 * 22 20 18 25 25 H 1.48497 * 109.47404 * 329.99659 * 22 20 18 26 26 C 1.47351 * 108.50986 * 24.56646 * 13 12 10 27 27 C 1.54436 * 112.75926 * 309.68230 * 10 9 8 28 28 H 1.09002 * 112.32111 * 280.06047 * 27 10 9 29 29 C 1.46913 * 110.85790 * 180.52300 * 7 2 1 30 30 H 1.08997 * 109.46737 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47241 * 300.00150 * 1 2 3 32 32 H 1.09001 * 109.46977 * 59.99944 * 1 2 3 33 33 H 0.96991 * 120.00112 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99332 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.71978 * 51.45306 * 8 7 2 36 36 H 1.08999 * 109.72005 * 290.80227 * 8 7 2 37 37 H 1.09001 * 109.12819 * 298.14263 * 9 8 7 38 38 H 1.09000 * 109.08228 * 179.01554 * 9 8 7 39 39 H 1.08998 * 110.54878 * 80.66125 * 12 10 9 40 40 H 1.09001 * 110.54565 * 317.85761 * 12 10 9 41 41 H 1.08995 * 109.47312 * 300.00017 * 16 14 13 42 42 H 1.09004 * 109.47132 * 59.99871 * 16 14 13 43 43 H 0.96998 * 120.00435 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.99532 * 241.43893 * 26 13 12 45 45 H 1.09005 * 109.99227 * 120.10498 * 26 13 12 46 46 H 1.09005 * 108.74695 * 66.58103 * 29 7 2 47 47 H 1.09004 * 109.83590 * 307.24585 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2498 -2.4546 6 8 2.7297 -1.6964 -1.1192 7 7 2.0196 -0.6925 1.1995 8 6 1.4719 -0.0820 2.4214 9 6 1.8362 -0.9762 3.6066 10 6 3.3341 -1.1428 3.7272 11 1 3.5701 -1.8720 4.5021 12 6 4.0456 0.1921 4.0287 13 7 5.4507 -0.0598 3.6424 14 6 6.5283 0.5909 4.1238 15 8 7.6383 0.2979 3.7326 16 6 6.3540 1.6827 5.1478 17 16 7.9738 2.3568 5.5927 18 6 7.4857 3.5752 6.7683 19 1 6.4406 3.7092 7.0049 20 6 8.4446 4.3634 7.3895 21 7 9.7183 4.2012 7.1001 22 14 7.9271 5.6556 8.6353 23 1 7.9018 5.0528 9.9923 24 1 8.8951 6.7815 8.6118 25 1 6.5731 6.1597 8.2923 26 6 5.4743 -1.1425 2.6432 27 6 3.9982 -1.5576 2.3960 28 1 3.8934 -2.6240 2.1958 29 6 3.4883 -0.6995 1.2366 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1489 0.5386 -2.5435 34 1 2.0305 -0.7069 -3.2465 35 1 0.3878 -0.0038 2.3394 36 1 1.9030 0.9092 2.5624 37 1 1.3780 -1.9556 3.4691 38 1 1.4519 -0.5278 4.5227 39 1 3.9776 0.4307 5.0901 40 1 3.6217 0.9960 3.4270 41 1 5.7321 2.4752 4.7317 42 1 5.8745 1.2736 6.0371 43 1 10.3883 4.7523 7.5339 44 1 6.0408 -1.9911 3.0265 45 1 5.9208 -0.7840 1.7157 46 1 3.8403 0.3239 1.3670 47 1 3.8801 -1.0949 0.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689212246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:44 Heat of formation + Delta-G solvation = -57.244937 kcal Electronic energy + Delta-G solvation = -28087.952102 eV Core-core repulsion = 24204.001382 eV Total energy + Delta-G solvation = -3883.950720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05164 -39.84357 -38.32026 -36.36611 -34.31831 -33.24027 -32.42294 -32.01780 -30.47583 -28.93766 -27.73440 -25.52113 -25.19479 -24.68419 -23.16528 -21.83668 -20.38620 -19.28723 -18.99579 -17.92087 -17.65456 -17.21289 -16.75914 -16.33194 -15.89021 -15.35220 -15.12229 -14.88271 -14.79744 -14.71165 -14.32213 -13.88182 -13.74304 -13.55329 -13.42905 -13.17147 -12.70853 -12.60967 -12.56203 -12.41897 -12.27197 -11.94556 -11.84556 -11.57539 -11.39341 -11.06118 -11.02041 -10.96576 -10.76347 -10.62392 -10.55935 -10.09055 -9.81663 -9.78919 -9.34564 -9.06040 -8.64436 -8.39063 -8.21484 -6.49027 -6.20728 -3.91266 2.25989 2.91849 2.96865 3.12233 3.22410 3.26489 3.30558 3.52308 3.64571 4.20750 4.27526 4.36303 4.39489 4.49421 4.55131 4.68103 4.82165 4.95386 5.04034 5.07527 5.12329 5.13034 5.14325 5.17181 5.29959 5.38117 5.43367 5.56202 5.58098 5.59380 5.69465 5.74344 5.76612 5.87821 5.90155 5.99934 6.04826 6.12836 6.15700 6.39024 6.48825 6.61014 6.74313 6.95135 7.60005 7.74148 7.89742 8.35905 8.61916 9.24254 10.86730 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002346 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.661610 B =11933.025079 C =12232.771628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 H 0.067 0.933 4 C 0.521 3.479 5 N -0.857 5.857 6 O -0.520 6.520 7 N -0.513 5.513 8 C 0.046 3.954 9 C -0.100 4.100 10 C -0.098 4.098 11 H 0.086 0.914 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.547 3.453 15 O -0.516 6.516 16 C -0.145 4.145 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.111 3.889 27 C -0.082 4.082 28 H 0.102 0.898 29 C 0.048 3.952 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.402 0.598 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.702 -9.040 -15.687 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 H 0.085 0.915 4 C 0.305 3.695 5 N -0.422 5.422 6 O -0.394 6.394 7 N -0.238 5.238 8 C -0.082 4.082 9 C -0.138 4.138 10 C -0.117 4.117 11 H 0.104 0.896 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.335 3.665 15 O -0.391 6.391 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.012 4.012 27 C -0.101 4.101 28 H 0.120 0.880 29 C -0.079 4.079 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.233 0.767 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.049 0.951 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.480 -10.475 -15.952 29.488 hybrid contribution -1.475 2.338 0.875 2.900 sum -23.955 -8.137 -15.077 29.452 Atomic orbital electron populations 1.21882 0.91920 1.03670 1.02778 1.21551 0.97227 0.96342 0.90084 0.91532 1.20478 0.79653 0.84433 0.84899 1.43874 1.56297 1.33925 1.08080 1.90711 1.36734 1.25703 1.86288 1.62015 1.08933 1.52723 1.00096 1.22371 1.00213 0.96108 0.89469 1.20973 0.94487 1.01083 0.97275 1.21747 0.94978 0.97159 0.97814 0.89613 1.22368 0.81410 0.97285 1.00838 1.48664 1.06310 1.37777 1.43633 1.20017 0.82896 0.81888 0.81679 1.90709 1.23830 1.65440 1.59074 1.23494 1.07996 0.98692 0.99397 1.85416 1.00450 1.44072 1.53493 1.22854 0.95785 1.22080 1.27551 0.90978 1.24994 0.94487 0.97229 0.96898 1.70015 1.00030 1.38925 1.41295 0.86168 0.78422 0.80198 0.80702 1.20252 1.20752 1.19720 1.22193 0.96225 0.90441 0.92381 1.22249 0.93201 1.00781 0.93839 0.87962 1.22523 0.86260 0.98315 1.00773 0.90941 0.90860 0.91701 0.77181 0.76653 0.89805 0.94181 0.90458 0.90967 0.90291 0.91703 0.89516 0.89369 0.92183 0.91354 0.91473 0.95083 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.76 37.16 0.33 -0.30 16 2 C 0.06 0.42 2.47 -68.86 -0.17 0.25 16 3 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 4 C 0.52 4.37 7.09 -10.99 -0.08 4.29 16 5 N -0.86 -3.80 8.77 31.22 0.27 -3.52 16 6 O -0.52 -6.60 14.73 5.56 0.08 -6.52 16 7 N -0.51 -4.51 4.33 -227.87 -0.99 -5.49 16 8 C 0.05 0.33 5.05 -3.74 -0.02 0.31 16 9 C -0.10 -0.74 5.56 -27.71 -0.15 -0.89 16 10 C -0.10 -0.93 3.06 -90.12 -0.28 -1.20 16 11 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 12 C 0.10 1.21 5.60 -2.63 -0.01 1.20 16 13 N -0.63 -9.73 3.34 -169.68 -0.57 -10.29 16 14 C 0.55 11.14 7.87 -10.99 -0.09 11.05 16 15 O -0.52 -12.59 16.20 5.55 0.09 -12.50 16 16 C -0.15 -3.09 5.17 36.00 0.19 -2.90 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.11 1.51 6.19 -2.35 -0.01 1.49 16 27 C -0.08 -0.87 3.71 -88.64 -0.33 -1.20 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 C 0.05 0.52 3.82 -3.82 -0.01 0.51 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 6.16 -51.93 -0.32 -0.05 16 32 H 0.06 0.15 7.56 -51.93 -0.39 -0.25 16 33 H 0.40 0.60 8.25 -40.82 -0.34 0.26 16 34 H 0.40 1.54 8.93 -40.82 -0.36 1.18 16 35 H 0.08 0.46 5.80 -51.93 -0.30 0.16 16 36 H 0.04 0.31 6.59 -51.93 -0.34 -0.03 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.90 7.50 -51.93 -0.39 0.51 16 40 H 0.06 0.72 5.80 -51.93 -0.30 0.42 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.74 7.86 -51.91 -0.41 1.33 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 46 H 0.03 0.36 6.98 -51.93 -0.36 0.00 16 47 H 0.10 1.29 5.30 -51.93 -0.28 1.02 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -37.65 377.14 -9.50 -47.15 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.12 Total: -0.90 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.45 Total: -0.49 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.55 Total: -45.00 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.17 Total: -19.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.65 -9.50 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689212246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.099 kcal (2) G-P(sol) polarization free energy of solvation -37.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds