Wall clock time and date at job start Wed Apr 1 2020 00:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46653 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00182 * 2 1 3 5 5 N 1.34779 * 119.99950 * 60.00239 * 4 2 1 6 6 O 1.21277 * 119.99947 * 239.99508 * 4 2 1 7 7 N 1.46901 * 109.46871 * 119.99991 * 2 1 3 8 8 C 1.47175 * 110.99801 * 303.95301 * 7 2 1 9 9 C 1.52870 * 108.19887 * 171.12513 * 8 7 2 10 10 C 1.51193 * 111.24608 * 58.59471 * 9 8 7 11 11 H 1.08998 * 110.18173 * 186.51938 * 10 9 8 12 12 C 1.54247 * 112.16553 * 63.77091 * 10 9 8 13 13 N 1.47879 * 103.87844 * 199.26049 * 12 10 9 14 14 C 1.34769 * 125.74464 * 204.60427 * 13 12 10 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00362 * 359.95825 * 14 13 12 17 17 S 1.81001 * 109.47473 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99849 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00359 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99372 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00546 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99474 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47122 * 90.00010 * 22 20 18 24 24 H 1.48506 * 109.46825 * 209.99996 * 22 20 18 25 25 H 1.48497 * 109.47404 * 329.99659 * 22 20 18 26 26 C 1.47351 * 108.50986 * 24.56646 * 13 12 10 27 27 C 1.54436 * 112.75926 * 309.68230 * 10 9 8 28 28 H 1.09002 * 112.32111 * 280.06047 * 27 10 9 29 29 C 1.46913 * 110.85790 * 180.52300 * 7 2 1 30 30 H 1.08997 * 109.46737 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47241 * 300.00150 * 1 2 3 32 32 H 1.09001 * 109.46977 * 59.99944 * 1 2 3 33 33 H 0.96991 * 120.00112 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99332 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.71978 * 51.45306 * 8 7 2 36 36 H 1.08999 * 109.72005 * 290.80227 * 8 7 2 37 37 H 1.09001 * 109.12819 * 298.14263 * 9 8 7 38 38 H 1.09000 * 109.08228 * 179.01554 * 9 8 7 39 39 H 1.08998 * 110.54878 * 80.66125 * 12 10 9 40 40 H 1.09001 * 110.54565 * 317.85761 * 12 10 9 41 41 H 1.08995 * 109.47312 * 300.00017 * 16 14 13 42 42 H 1.09004 * 109.47132 * 59.99871 * 16 14 13 43 43 H 0.96998 * 120.00435 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.99532 * 241.43893 * 26 13 12 45 45 H 1.09005 * 109.99227 * 120.10498 * 26 13 12 46 46 H 1.09005 * 108.74695 * 66.58103 * 29 7 2 47 47 H 1.09004 * 109.83590 * 307.24585 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2498 -2.4546 6 8 2.7297 -1.6964 -1.1192 7 7 2.0196 -0.6925 1.1995 8 6 1.4719 -0.0820 2.4214 9 6 1.8362 -0.9762 3.6066 10 6 3.3341 -1.1428 3.7272 11 1 3.5701 -1.8720 4.5021 12 6 4.0456 0.1921 4.0287 13 7 5.4507 -0.0598 3.6424 14 6 6.5283 0.5909 4.1238 15 8 7.6383 0.2979 3.7326 16 6 6.3540 1.6827 5.1478 17 16 7.9738 2.3568 5.5927 18 6 7.4857 3.5752 6.7683 19 1 6.4406 3.7092 7.0049 20 6 8.4446 4.3634 7.3895 21 7 9.7183 4.2012 7.1001 22 14 7.9271 5.6556 8.6353 23 1 7.9018 5.0528 9.9923 24 1 8.8951 6.7815 8.6118 25 1 6.5731 6.1597 8.2923 26 6 5.4743 -1.1425 2.6432 27 6 3.9982 -1.5576 2.3960 28 1 3.8934 -2.6240 2.1958 29 6 3.4883 -0.6995 1.2366 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1489 0.5386 -2.5435 34 1 2.0305 -0.7069 -3.2465 35 1 0.3878 -0.0038 2.3394 36 1 1.9030 0.9092 2.5624 37 1 1.3780 -1.9556 3.4691 38 1 1.4519 -0.5278 4.5227 39 1 3.9776 0.4307 5.0901 40 1 3.6217 0.9960 3.4270 41 1 5.7321 2.4752 4.7317 42 1 5.8745 1.2736 6.0371 43 1 10.3883 4.7523 7.5339 44 1 6.0408 -1.9911 3.0265 45 1 5.9208 -0.7840 1.7157 46 1 3.8403 0.3239 1.3670 47 1 3.8801 -1.0949 0.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689212246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:43 Heat of formation + Delta-G solvation = -87.396396 kcal Electronic energy + Delta-G solvation = -28089.259567 eV Core-core repulsion = 24204.001382 eV Total energy + Delta-G solvation = -3885.258185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92520 -40.76268 -39.56516 -37.30803 -34.97228 -34.60289 -34.07420 -32.99514 -31.35167 -30.24054 -28.67709 -27.69346 -25.86049 -25.65135 -23.93922 -22.68685 -21.06848 -20.66285 -19.89533 -19.53500 -18.43445 -18.07751 -17.85025 -17.44363 -16.89768 -16.72255 -16.51982 -16.26583 -15.73808 -15.66864 -15.51420 -15.17309 -14.79209 -14.49925 -14.41830 -14.23727 -14.08140 -13.63225 -13.49225 -13.30864 -13.18181 -13.12532 -12.91250 -12.89065 -12.63702 -12.48489 -12.39677 -12.17238 -11.82051 -11.73463 -11.37246 -11.26693 -11.15461 -11.00150 -10.65857 -10.47860 -10.30573 -9.78073 -9.23895 -8.70830 -8.35739 -6.15309 1.21210 1.42406 1.43597 1.51431 1.55451 1.65307 2.03857 2.25903 2.42864 2.89326 2.98368 3.20646 3.44506 3.50438 3.73009 3.87637 3.93437 4.04054 4.08652 4.16526 4.17908 4.25265 4.30235 4.33812 4.38760 4.46627 4.54439 4.63886 4.65370 4.66825 4.78126 4.91532 4.95131 5.01549 5.09463 5.13918 5.25889 5.27957 5.35071 5.40135 5.42607 5.91275 5.99973 6.11540 6.18485 6.34567 6.51493 7.04863 7.06107 7.38954 8.73720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002346 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.661610 B =11933.025079 C =12232.771628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 H 0.075 0.925 4 C 0.514 3.486 5 N -0.838 5.838 6 O -0.572 6.572 7 N -0.521 5.521 8 C 0.044 3.956 9 C -0.096 4.096 10 C -0.087 4.087 11 H 0.090 0.910 12 C 0.097 3.903 13 N -0.616 5.616 14 C 0.543 3.457 15 O -0.569 6.569 16 C -0.116 4.116 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.256 1.256 26 C 0.107 3.893 27 C -0.070 4.070 28 H 0.108 0.892 29 C 0.058 3.942 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.416 0.584 34 H 0.407 0.593 35 H 0.108 0.892 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.892 -8.029 -15.036 33.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 H 0.093 0.907 4 C 0.299 3.701 5 N -0.403 5.403 6 O -0.450 6.450 7 N -0.246 5.246 8 C -0.083 4.083 9 C -0.134 4.134 10 C -0.106 4.106 11 H 0.108 0.892 12 C -0.025 4.025 13 N -0.351 5.351 14 C 0.332 3.668 15 O -0.448 6.448 16 C -0.267 4.267 17 S 0.074 5.926 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.180 1.180 26 C -0.016 4.016 27 C -0.089 4.089 28 H 0.126 0.874 29 C -0.070 4.070 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.248 0.752 34 H 0.238 0.762 35 H 0.126 0.874 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.772 -9.452 -15.343 32.272 hybrid contribution -0.263 1.950 0.521 2.035 sum -27.035 -7.502 -14.822 31.731 Atomic orbital electron populations 1.21891 0.89522 1.03556 1.04646 1.21689 0.98955 0.96103 0.88666 0.90693 1.20876 0.79042 0.83937 0.86264 1.43736 1.55392 1.33997 1.07180 1.90692 1.39161 1.28099 1.87097 1.62004 1.07269 1.53766 1.01535 1.22495 1.01556 0.95704 0.88540 1.20988 0.92319 1.01717 0.98337 1.21744 0.96427 0.95697 0.96723 0.89217 1.22714 0.78993 0.99093 1.01680 1.48610 1.06962 1.36809 1.42688 1.19866 0.83260 0.82047 0.81652 1.90686 1.26095 1.67082 1.60938 1.23274 1.03616 0.99270 1.00572 1.85643 1.06996 1.45476 1.54484 1.23178 0.96468 1.22079 1.27500 0.89789 1.26176 0.94304 0.99684 0.99093 1.70187 1.01548 1.40302 1.42827 0.84915 0.78607 0.76680 0.77527 1.19218 1.20308 1.17990 1.22329 0.98590 0.89526 0.91143 1.22186 0.90861 1.01042 0.94852 0.87436 1.22280 0.88005 0.97102 0.99571 0.91957 0.89595 0.89314 0.75217 0.76190 0.87403 0.94377 0.89941 0.88923 0.89237 0.90519 0.87682 0.87360 0.91957 0.91921 0.92913 0.96489 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.76 71.98 0.63 -0.13 16 2 C 0.06 0.68 2.47 44.17 0.11 0.79 16 3 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 4 C 0.51 8.18 7.09 87.66 0.62 8.80 16 5 N -0.84 -6.17 8.77 -173.54 -1.52 -7.69 16 6 O -0.57 -14.76 14.73 -3.02 -0.04 -14.81 16 7 N -0.52 -8.20 4.33 -874.85 -3.79 -11.98 16 8 C 0.04 0.49 5.05 86.21 0.44 0.92 16 9 C -0.10 -1.07 5.56 29.96 0.17 -0.90 16 10 C -0.09 -1.44 3.06 -10.47 -0.03 -1.48 16 11 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 12 C 0.10 2.05 5.60 86.54 0.48 2.53 16 13 N -0.62 -18.96 3.34 -809.13 -2.70 -21.66 16 14 C 0.54 22.51 7.87 87.66 0.69 23.20 16 15 O -0.57 -29.07 16.20 -3.04 -0.05 -29.12 16 16 C -0.12 -4.91 5.17 71.23 0.37 -4.54 16 17 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 16 18 C -0.54 -31.46 9.50 67.96 0.65 -30.81 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16 22 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C 0.11 2.98 6.19 87.01 0.54 3.52 16 27 C -0.07 -1.45 3.71 -9.51 -0.04 -1.48 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 C 0.06 1.23 3.82 86.30 0.33 1.56 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.28 6.16 -2.39 -0.01 0.26 16 32 H 0.09 0.06 7.56 -2.39 -0.02 0.04 16 33 H 0.42 0.23 8.25 -92.71 -0.76 -0.54 16 34 H 0.41 2.68 8.93 -92.71 -0.83 1.85 16 35 H 0.11 0.72 5.80 -2.39 -0.01 0.70 16 36 H 0.04 0.46 6.59 -2.39 -0.02 0.44 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 1.76 7.50 -2.39 -0.02 1.74 16 40 H 0.08 1.50 5.80 -2.39 -0.01 1.49 16 41 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 42 H 0.11 4.12 7.86 -2.39 -0.02 4.10 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.62 7.76 -2.38 -0.02 1.60 16 46 H 0.02 0.39 6.98 -2.38 -0.02 0.38 16 47 H 0.08 2.14 5.30 -2.39 -0.01 2.13 16 Total: -1.00 -86.19 377.14 -2.12 -88.31 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.58 Total: 14.54 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.42 Total: 3.14 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -7.73 Total: -97.78 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.09 Total: -43.93 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -86.19 -2.12 -88.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689212246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.909 kcal (2) G-P(sol) polarization free energy of solvation -86.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds