Wall clock time and date at job start Wed Apr 1 2020 01:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47332 * 2 1 4 4 C 1.34774 * 120.00013 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47080 * 173.82583 * 6 4 3 8 8 C 1.46965 * 111.00324 * 293.64023 * 7 6 4 9 9 C 1.53764 * 108.96237 * 180.38584 * 8 7 6 10 10 H 1.08995 * 112.29437 * 187.30976 * 9 8 7 11 11 C 1.54696 * 107.65088 * 312.23223 * 9 8 7 12 12 C 1.54927 * 104.51862 * 87.26263 * 11 9 8 13 13 C 1.54697 * 104.52483 * 0.02562 * 12 11 9 14 14 H 1.08995 * 112.93470 * 148.20049 * 13 12 11 15 15 C 1.46971 * 111.00142 * 168.89234 * 7 6 4 16 16 N 1.48438 * 104.03012 * 26.02095 * 13 12 11 17 17 C 1.34778 * 128.44523 * 137.18632 * 16 13 12 18 18 O 1.21282 * 119.99912 * 179.67484 * 17 16 13 19 19 C 1.50701 * 120.00277 * 359.94998 * 17 16 13 20 20 S 1.80997 * 109.47059 * 179.72868 * 19 17 16 21 21 C 1.76200 * 99.99940 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99860 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00445 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00249 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99568 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47458 * 89.99842 * 25 23 21 27 27 H 1.48501 * 109.47237 * 209.99966 * 25 23 21 28 28 H 1.48500 * 109.47291 * 329.99469 * 25 23 21 29 29 H 1.08995 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46650 * 299.99708 * 1 2 3 31 31 H 1.08995 * 109.47351 * 59.99270 * 1 2 3 32 32 H 1.09004 * 109.46650 * 240.00292 * 2 1 3 33 33 H 1.08994 * 109.47575 * 120.00226 * 2 1 3 34 34 H 0.97002 * 119.99688 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.47470 * 53.82684 * 6 4 3 36 36 H 1.08998 * 109.47500 * 293.82378 * 6 4 3 37 37 H 1.09006 * 109.55550 * 60.54129 * 8 7 6 38 38 H 1.09000 * 109.55489 * 300.22967 * 8 7 6 39 39 H 1.08998 * 110.41021 * 206.17010 * 11 9 8 40 40 H 1.08996 * 110.40816 * 328.60088 * 11 9 8 41 41 H 1.09011 * 110.35255 * 241.29524 * 12 11 9 42 42 H 1.08998 * 110.66200 * 118.85566 * 12 11 9 43 43 H 1.09003 * 109.55126 * 299.45662 * 15 7 6 44 44 H 1.08994 * 109.55615 * 59.66369 * 15 7 6 45 45 H 1.09000 * 109.47011 * 299.72533 * 19 17 16 46 46 H 1.09000 * 109.46903 * 59.72806 * 19 17 16 47 47 H 0.97001 * 119.99789 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0482 0.0001 7 7 5.3073 3.0508 0.1483 8 6 5.7035 2.5462 1.4705 9 6 7.2371 2.5782 1.5785 10 1 7.5976 2.0973 2.4878 11 6 7.8113 1.9410 0.2911 12 6 7.9073 3.1159 -0.7143 13 6 7.3817 4.3414 0.0699 14 1 7.8580 5.2744 -0.2312 15 6 5.8605 4.3879 -0.1089 16 7 7.6491 4.0018 1.4899 17 6 8.1402 4.7945 2.4630 18 8 8.2934 4.3556 3.5832 19 6 8.4932 6.2281 2.1607 20 16 9.1143 7.0259 3.6619 21 6 9.4406 8.6409 3.0375 22 1 9.2449 8.8685 2.0000 23 6 9.9482 9.6210 3.8791 24 7 10.1924 10.8273 3.4125 25 14 10.2860 9.2276 5.6737 26 1 11.6786 8.7327 5.8184 27 1 10.1094 10.4547 6.4912 28 1 9.3385 8.1828 6.1383 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.3881 2.1185 -0.0004 35 1 3.3955 3.5925 0.8301 36 1 3.5751 3.5297 -0.9396 37 1 5.3506 1.5220 1.5910 38 1 5.2699 3.1768 2.2466 39 1 8.7982 1.5199 0.4830 40 1 7.1364 1.1731 -0.0866 41 1 7.2792 2.9228 -1.5841 42 1 8.9409 3.2762 -1.0209 43 1 5.6207 4.6921 -1.1277 44 1 5.4324 5.1014 0.5952 45 1 9.2622 6.2579 1.3887 46 1 7.6056 6.7546 1.8100 47 1 10.5475 11.5121 4.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690201023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:36 Heat of formation + Delta-G solvation = -48.694834 kcal Electronic energy + Delta-G solvation = -27947.690121 eV Core-core repulsion = 24064.110161 eV Total energy + Delta-G solvation = -3883.579960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07674 -39.81230 -38.04219 -35.80715 -35.02754 -32.44484 -31.96907 -31.37111 -31.20444 -29.01548 -28.27554 -25.62421 -24.85655 -24.57134 -23.01969 -21.50884 -20.86997 -20.63878 -18.59564 -17.77182 -17.39158 -17.00302 -16.47570 -16.23119 -15.70182 -15.29924 -15.07927 -14.96336 -14.83810 -14.57171 -14.23251 -13.86454 -13.79291 -13.58366 -13.34061 -13.00788 -12.95142 -12.82114 -12.54539 -12.38272 -12.32376 -12.22551 -11.87326 -11.73548 -11.29146 -11.25826 -11.19223 -11.01007 -10.90353 -10.57977 -10.42709 -10.08941 -9.85606 -9.47922 -9.44789 -9.00621 -8.67457 -8.51044 -8.49243 -6.92078 -6.29274 -4.00862 2.34669 2.65222 2.69806 2.96709 3.19108 3.33405 3.50610 3.59474 3.63831 4.32275 4.33371 4.43838 4.53321 4.59824 4.62264 4.68632 4.81621 4.84788 4.86587 4.88912 4.91930 5.06573 5.09879 5.14927 5.26536 5.32857 5.42303 5.46077 5.52496 5.54968 5.55936 5.65335 5.71714 5.75741 5.81421 5.97220 6.00522 6.04057 6.11957 6.18570 6.47257 6.59016 6.76558 7.12753 7.73035 7.92652 7.93794 8.40967 8.47729 9.17023 10.79877 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.002333 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.765864 B =11997.838210 C =12338.083474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.513 3.487 5 O -0.517 6.517 6 C 0.036 3.964 7 N -0.513 5.513 8 C 0.045 3.955 9 C 0.136 3.864 10 H 0.104 0.896 11 C -0.114 4.114 12 C -0.113 4.113 13 C 0.128 3.872 14 H 0.108 0.892 15 C 0.045 3.955 16 N -0.627 5.627 17 C 0.553 3.447 18 O -0.520 6.520 19 C -0.117 4.117 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.852 -19.748 -12.402 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.392 5.392 4 C 0.299 3.701 5 O -0.392 6.392 6 C -0.096 4.096 7 N -0.238 5.238 8 C -0.084 4.084 9 C 0.033 3.967 10 H 0.122 0.878 11 C -0.153 4.153 12 C -0.151 4.151 13 C 0.024 3.976 14 H 0.126 0.874 15 C -0.084 4.084 16 N -0.364 5.364 17 C 0.342 3.658 18 O -0.394 6.394 19 C -0.267 4.267 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.725 -21.125 -10.937 29.666 hybrid contribution -0.754 1.692 -0.022 1.852 sum -18.479 -19.433 -10.959 28.969 Atomic orbital electron populations 1.22009 0.94459 1.03295 1.02540 1.21269 0.94162 0.82959 1.02421 1.46081 1.07236 1.08965 1.76912 1.20586 0.81960 0.91599 0.75998 1.90699 1.54945 1.46035 1.47482 1.21959 0.90150 0.93971 1.03496 1.61664 1.07200 1.24209 1.30735 1.22759 0.95885 1.01550 0.88183 1.22323 0.92647 0.82076 0.99703 0.87769 1.22504 1.00782 0.98055 0.93926 1.22495 1.00820 0.93562 0.98268 1.22346 0.93956 0.99762 0.81579 0.87432 1.22605 0.95201 0.88875 1.01711 1.49436 1.64913 1.12030 1.09987 1.19946 0.75667 0.86815 0.83397 1.90702 1.52531 1.75159 1.21039 1.23243 1.04615 0.93890 1.04967 1.84803 1.84037 1.10981 1.11763 1.22305 1.50079 0.93940 1.00468 0.89405 1.24706 0.93638 0.93979 0.98984 1.69935 1.42691 1.02550 1.36493 0.86736 0.80930 0.79575 0.84623 1.19174 1.19950 1.15962 0.90771 0.91957 0.91954 0.91503 0.91555 0.76670 0.91980 0.87569 0.88409 0.94689 0.91977 0.89159 0.89790 0.91687 0.89241 0.93928 0.88603 0.88794 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.03 37.16 0.37 -0.14 16 2 C 0.12 0.65 6.39 -4.04 -0.03 0.63 16 3 N -0.74 -4.35 5.56 -60.29 -0.33 -4.69 16 4 C 0.51 4.52 7.43 -10.99 -0.08 4.44 16 5 O -0.52 -6.54 14.65 5.56 0.08 -6.45 16 6 C 0.04 0.27 5.46 -4.98 -0.03 0.24 16 7 N -0.51 -5.06 3.32 -235.31 -0.78 -5.84 16 8 C 0.04 0.53 4.67 -3.39 -0.02 0.51 16 9 C 0.14 1.79 4.20 -65.55 -0.28 1.52 16 10 H 0.10 1.50 7.94 -51.93 -0.41 1.08 16 11 C -0.11 -1.28 6.17 -24.82 -0.15 -1.43 16 12 C -0.11 -1.14 6.17 -24.82 -0.15 -1.29 16 13 C 0.13 1.44 4.04 -65.84 -0.27 1.17 16 14 H 0.11 1.15 7.46 -51.93 -0.39 0.76 16 15 C 0.04 0.43 5.00 -3.66 -0.02 0.41 16 16 N -0.63 -9.24 2.78 -153.08 -0.43 -9.67 16 17 C 0.55 10.57 7.95 -10.98 -0.09 10.48 16 18 O -0.52 -11.88 16.20 5.56 0.09 -11.79 16 19 C -0.12 -2.34 5.15 36.01 0.19 -2.16 16 20 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 21 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 22 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 23 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 25 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 1.28 8.47 -40.82 -0.35 0.94 16 35 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.11 0.56 8.05 -51.93 -0.42 0.14 16 37 H 0.10 1.21 6.15 -51.93 -0.32 0.89 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.03 7.81 -51.93 -0.41 0.63 16 41 H 0.08 0.77 7.80 -51.92 -0.40 0.36 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 1.81 8.09 -51.92 -0.42 1.39 16 46 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -36.22 387.69 -9.55 -45.77 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.76 Total: -1.29 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.33 Total: 2.34 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.77 Total: -45.99 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.22 -9.55 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690201023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.925 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds