Wall clock time and date at job start Wed Apr 1 2020 01:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47332 * 2 1 4 4 C 1.34774 * 120.00013 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47080 * 173.82583 * 6 4 3 8 8 C 1.46965 * 111.00324 * 293.64023 * 7 6 4 9 9 C 1.53764 * 108.96237 * 180.38584 * 8 7 6 10 10 H 1.08995 * 112.29437 * 187.30976 * 9 8 7 11 11 C 1.54696 * 107.65088 * 312.23223 * 9 8 7 12 12 C 1.54927 * 104.51862 * 87.26263 * 11 9 8 13 13 C 1.54697 * 104.52483 * 0.02562 * 12 11 9 14 14 H 1.08995 * 112.93470 * 148.20049 * 13 12 11 15 15 C 1.46971 * 111.00142 * 168.89234 * 7 6 4 16 16 N 1.48438 * 104.03012 * 26.02095 * 13 12 11 17 17 C 1.34778 * 128.44523 * 137.18632 * 16 13 12 18 18 O 1.21282 * 119.99912 * 179.67484 * 17 16 13 19 19 C 1.50701 * 120.00277 * 359.94998 * 17 16 13 20 20 S 1.80997 * 109.47059 * 179.72868 * 19 17 16 21 21 C 1.76200 * 99.99940 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99860 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00445 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00249 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99568 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47458 * 89.99842 * 25 23 21 27 27 H 1.48501 * 109.47237 * 209.99966 * 25 23 21 28 28 H 1.48500 * 109.47291 * 329.99469 * 25 23 21 29 29 H 1.08995 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46650 * 299.99708 * 1 2 3 31 31 H 1.08995 * 109.47351 * 59.99270 * 1 2 3 32 32 H 1.09004 * 109.46650 * 240.00292 * 2 1 3 33 33 H 1.08994 * 109.47575 * 120.00226 * 2 1 3 34 34 H 0.97002 * 119.99688 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.47470 * 53.82684 * 6 4 3 36 36 H 1.08998 * 109.47500 * 293.82378 * 6 4 3 37 37 H 1.09006 * 109.55550 * 60.54129 * 8 7 6 38 38 H 1.09000 * 109.55489 * 300.22967 * 8 7 6 39 39 H 1.08998 * 110.41021 * 206.17010 * 11 9 8 40 40 H 1.08996 * 110.40816 * 328.60088 * 11 9 8 41 41 H 1.09011 * 110.35255 * 241.29524 * 12 11 9 42 42 H 1.08998 * 110.66200 * 118.85566 * 12 11 9 43 43 H 1.09003 * 109.55126 * 299.45662 * 15 7 6 44 44 H 1.08994 * 109.55615 * 59.66369 * 15 7 6 45 45 H 1.09000 * 109.47011 * 299.72533 * 19 17 16 46 46 H 1.09000 * 109.46903 * 59.72806 * 19 17 16 47 47 H 0.97001 * 119.99789 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1316 0.7056 -0.0005 6 6 3.8458 3.0482 0.0001 7 7 5.3073 3.0508 0.1483 8 6 5.7035 2.5462 1.4705 9 6 7.2371 2.5782 1.5785 10 1 7.5976 2.0973 2.4878 11 6 7.8113 1.9410 0.2911 12 6 7.9073 3.1159 -0.7143 13 6 7.3817 4.3414 0.0699 14 1 7.8580 5.2744 -0.2312 15 6 5.8605 4.3879 -0.1089 16 7 7.6491 4.0018 1.4899 17 6 8.1402 4.7945 2.4630 18 8 8.2934 4.3556 3.5832 19 6 8.4932 6.2281 2.1607 20 16 9.1143 7.0259 3.6619 21 6 9.4406 8.6409 3.0375 22 1 9.2449 8.8685 2.0000 23 6 9.9482 9.6210 3.8791 24 7 10.1924 10.8273 3.4125 25 14 10.2860 9.2276 5.6737 26 1 11.6786 8.7327 5.8184 27 1 10.1094 10.4547 6.4912 28 1 9.3385 8.1828 6.1383 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.3881 2.1185 -0.0004 35 1 3.3955 3.5925 0.8301 36 1 3.5751 3.5297 -0.9396 37 1 5.3506 1.5220 1.5910 38 1 5.2699 3.1768 2.2466 39 1 8.7982 1.5199 0.4830 40 1 7.1364 1.1731 -0.0866 41 1 7.2792 2.9228 -1.5841 42 1 8.9409 3.2762 -1.0209 43 1 5.6207 4.6921 -1.1277 44 1 5.4324 5.1014 0.5952 45 1 9.2622 6.2579 1.3887 46 1 7.6056 6.7546 1.8100 47 1 10.5475 11.5121 4.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690201023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:36 Heat of formation + Delta-G solvation = -74.944217 kcal Electronic energy + Delta-G solvation = -27948.828379 eV Core-core repulsion = 24064.110161 eV Total energy + Delta-G solvation = -3884.718218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07400 -40.60458 -39.39778 -36.46943 -35.85145 -34.68598 -33.15384 -32.35694 -31.75243 -30.41173 -29.03264 -27.86369 -25.73532 -25.43371 -23.55927 -22.62021 -21.69574 -21.44095 -20.13486 -19.30079 -18.41290 -18.04648 -17.34707 -17.15553 -16.92561 -16.57731 -16.42436 -16.24580 -15.99340 -15.47075 -15.37452 -14.94244 -14.91241 -14.73118 -14.60162 -14.37443 -13.86772 -13.71021 -13.50189 -13.38233 -13.27389 -13.13163 -13.03401 -12.76359 -12.67616 -12.64779 -12.36680 -12.13675 -12.10803 -11.88866 -11.80072 -11.30740 -11.18596 -11.03738 -10.80801 -10.55561 -10.05259 -9.82763 -9.35890 -9.02802 -8.52710 -6.24048 0.92811 1.29955 1.42651 1.47325 1.50670 1.69195 1.96694 2.11620 2.23600 2.65978 2.85386 2.88708 3.40990 3.60993 3.77905 3.83309 3.92775 3.97080 4.09565 4.16735 4.18981 4.22366 4.29010 4.35616 4.40023 4.40790 4.51891 4.53310 4.58579 4.69975 4.77478 4.83963 4.87106 4.96977 5.06979 5.09270 5.17626 5.25826 5.27133 5.51187 5.54686 5.69890 5.81667 5.93755 6.10224 6.44216 6.62756 6.92451 7.01968 7.33579 8.59449 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.002333 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.765864 B =11997.838210 C =12338.083474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 N -0.724 5.724 4 C 0.509 3.491 5 O -0.562 6.562 6 C 0.036 3.964 7 N -0.515 5.515 8 C 0.059 3.941 9 C 0.128 3.872 10 H 0.083 0.917 11 C -0.105 4.105 12 C -0.104 4.104 13 C 0.118 3.882 14 H 0.118 0.882 15 C 0.048 3.952 16 N -0.619 5.619 17 C 0.553 3.447 18 O -0.568 6.568 19 C -0.099 4.099 20 S -0.177 6.177 21 C -0.526 4.526 22 H 0.065 0.935 23 C 0.047 3.953 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.239 1.239 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.017 0.983 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.483 -20.133 -13.980 31.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.379 5.379 4 C 0.296 3.704 5 O -0.440 6.440 6 C -0.094 4.094 7 N -0.240 5.240 8 C -0.070 4.070 9 C 0.025 3.975 10 H 0.102 0.898 11 C -0.144 4.144 12 C -0.142 4.142 13 C 0.015 3.985 14 H 0.136 0.864 15 C -0.080 4.080 16 N -0.353 5.353 17 C 0.342 3.658 18 O -0.447 6.447 19 C -0.250 4.250 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.083 0.917 23 C -0.158 4.158 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.188 1.188 27 H -0.182 1.182 28 H -0.163 1.163 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.143 0.857 44 H 0.051 0.949 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.421 -21.501 -12.577 31.585 hybrid contribution -0.353 1.704 0.310 1.768 sum -19.774 -19.796 -12.266 30.551 Atomic orbital electron populations 1.21952 0.92182 1.04014 1.03243 1.21299 0.95943 0.82592 1.01198 1.46013 1.06743 1.09718 1.75386 1.20890 0.82463 0.91741 0.75348 1.90685 1.56181 1.47303 1.49833 1.22071 0.88448 0.93384 1.05510 1.61651 1.09047 1.24390 1.28907 1.22512 0.94464 1.00985 0.89079 1.22476 0.93908 0.81069 1.00060 0.89842 1.22424 1.00513 0.98399 0.93032 1.22479 1.01611 0.92017 0.98099 1.22745 0.95722 1.00822 0.79194 0.86435 1.22652 0.93515 0.88368 1.03462 1.49404 1.62805 1.12306 1.10830 1.19681 0.75961 0.86635 0.83522 1.90680 1.55066 1.75850 1.23084 1.23169 1.05437 0.94322 1.02023 1.84774 1.84714 1.09718 1.15846 1.22415 1.49780 0.95629 0.99572 0.91719 1.25516 0.93535 0.93924 1.02852 1.70003 1.43586 1.03449 1.38140 0.85900 0.80683 0.79810 0.80179 1.18767 1.18156 1.16348 0.90113 0.91457 0.90940 0.92491 0.93130 0.74863 0.90894 0.84428 0.89063 0.96470 0.92060 0.89119 0.87947 0.91075 0.85737 0.94851 0.87100 0.87129 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 10.03 71.98 0.72 0.05 16 2 C 0.11 1.18 6.39 86.38 0.55 1.73 16 3 N -0.72 -7.24 5.56 -463.06 -2.57 -9.82 16 4 C 0.51 8.16 7.43 87.66 0.65 8.82 16 5 O -0.56 -13.89 14.65 -3.04 -0.04 -13.94 16 6 C 0.04 0.44 5.46 85.56 0.47 0.91 16 7 N -0.52 -8.95 3.32 -898.37 -2.98 -11.93 16 8 C 0.06 1.36 4.67 86.55 0.40 1.76 16 9 C 0.13 3.35 4.20 45.45 0.19 3.54 16 10 H 0.08 2.51 7.94 -2.39 -0.02 2.49 16 11 C -0.11 -2.22 6.17 31.83 0.20 -2.02 16 12 C -0.10 -1.80 6.17 31.83 0.20 -1.60 16 13 C 0.12 2.34 4.04 45.28 0.18 2.53 16 14 H 0.12 2.14 7.46 -2.39 -0.02 2.13 16 15 C 0.05 0.76 5.00 86.37 0.43 1.20 16 16 N -0.62 -17.69 2.78 -756.63 -2.11 -19.80 16 17 C 0.55 21.04 7.95 87.66 0.70 21.73 16 18 O -0.57 -26.47 16.20 -3.03 -0.05 -26.52 16 19 C -0.10 -3.90 5.15 71.24 0.37 -3.53 16 20 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 21 C -0.53 -30.72 10.04 67.95 0.68 -30.04 16 22 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 23 C 0.05 2.79 5.50 84.86 0.47 3.25 16 24 N -0.91 -55.43 13.97 21.65 0.30 -55.13 16 25 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 26 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.41 1.57 8.47 -92.71 -0.79 0.78 16 35 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.14 0.84 8.05 -2.39 -0.02 0.82 16 37 H 0.09 2.28 6.15 -2.38 -0.01 2.27 16 38 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.96 7.81 -2.39 -0.02 1.94 16 41 H 0.10 1.47 7.80 -2.38 -0.02 1.45 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.12 1.19 8.13 -2.39 -0.02 1.18 16 44 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 4.04 8.09 -2.40 -0.02 4.02 16 46 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 47 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.15 387.69 -0.24 -80.39 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.14 Total: 11.37 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.21 Total: 8.32 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -7.36 Total: -96.68 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.09 Total: -40.45 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.21 kcal Total: -80.15 -0.24 -80.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690201023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.445 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds