Wall clock time and date at job start Wed Apr 1 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47374 * 2 1 4 4 C 1.46761 * 124.35115 * 270.00066 * 3 2 1 5 5 C 1.54486 * 105.47380 * 196.99455 * 4 3 2 6 6 C 1.54628 * 101.76185 * 334.57986 * 5 4 3 7 7 H 1.08999 * 110.60509 * 266.06514 * 6 5 4 8 8 N 1.46904 * 110.48427 * 143.47670 * 6 5 4 9 9 C 1.47960 * 110.99873 * 178.77038 * 8 6 5 10 10 C 1.53937 * 86.17949 * 137.58413 * 9 8 6 11 11 C 1.53000 * 113.73433 * 221.91989 * 10 9 8 12 12 N 1.46502 * 109.46875 * 184.99738 * 11 10 9 13 13 C 1.34781 * 119.99688 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00203 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99576 * 180.02562 * 13 12 11 16 16 S 1.81008 * 109.46688 * 180.02562 * 15 13 12 17 17 C 1.76209 * 99.99770 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99909 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99961 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99619 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46841 * 89.99961 * 21 19 17 23 23 H 1.48495 * 109.47003 * 210.00070 * 21 19 17 24 24 H 1.48500 * 109.46928 * 329.99909 * 21 19 17 25 25 C 1.47958 * 111.00220 * 278.13040 * 8 6 5 26 26 C 1.34421 * 124.34672 * 89.97072 * 3 2 1 27 27 O 1.21280 * 124.94471 * 359.58307 * 26 3 2 28 28 H 1.08994 * 109.47213 * 300.00256 * 1 2 3 29 29 H 1.09005 * 109.46607 * 60.00056 * 1 2 3 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47298 * 240.00266 * 2 1 3 32 32 H 1.09001 * 109.47425 * 120.00317 * 2 1 3 33 33 H 1.09002 * 110.24340 * 315.98903 * 4 3 2 34 34 H 1.09001 * 110.24804 * 77.99364 * 4 3 2 35 35 H 1.09004 * 110.96458 * 216.46765 * 5 4 3 36 36 H 1.08994 * 110.97218 * 92.69661 * 5 4 3 37 37 H 1.09001 * 113.75911 * 23.26902 * 9 8 6 38 38 H 1.09004 * 113.76293 * 251.89925 * 9 8 6 39 39 H 1.09000 * 113.73632 * 90.63756 * 10 9 8 40 40 H 1.08997 * 109.47342 * 304.99593 * 11 10 9 41 41 H 1.09000 * 109.47177 * 65.00366 * 11 10 9 42 42 H 0.97001 * 119.99997 * 0.02562 * 12 11 10 43 43 H 1.09001 * 109.47459 * 300.00023 * 15 13 12 44 44 H 1.09002 * 109.47371 * 60.00440 * 15 13 12 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.09001 * 113.75711 * 108.10017 * 25 8 6 47 47 H 1.08998 * 113.76069 * 336.74148 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1741 3.3444 -0.7485 6 6 2.7687 3.4757 0.7379 7 1 1.9741 4.2126 0.8551 8 7 3.9318 3.8407 1.5577 9 6 3.5505 3.9981 2.9786 10 6 4.8496 3.2394 3.3045 11 6 4.6939 2.2014 4.4177 12 7 6.0026 1.6232 4.7328 13 6 6.1100 0.6806 5.6902 14 8 5.1232 0.3107 6.2904 15 6 7.4563 0.0864 6.0147 16 16 7.2720 -1.1417 7.3316 17 6 8.9477 -1.6584 7.5048 18 1 9.7147 -1.2210 6.8828 19 6 9.2818 -2.6282 8.4398 20 7 8.3467 -3.1623 9.1968 21 14 11.0581 -3.1765 8.6229 22 1 11.7377 -2.3243 9.6314 23 1 11.0957 -4.5933 9.0660 24 1 11.7530 -3.0477 7.3169 25 6 4.7436 2.6484 1.8871 26 6 2.2707 2.0964 1.1098 27 8 2.1203 1.6947 2.2443 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.8328 1.5532 -1.9381 34 1 1.3638 2.5305 -1.6431 35 1 2.9301 4.2518 -1.3010 36 1 4.2329 3.1039 -0.8442 37 1 2.6451 3.4566 3.2530 38 1 3.5487 5.0330 3.3209 39 1 5.7135 3.8889 3.4454 40 1 4.2849 2.6809 5.3070 41 1 4.0183 1.4125 4.0870 42 1 6.7919 1.9194 4.2530 43 1 7.8656 -0.3934 5.1257 44 1 8.1317 0.8755 6.3452 45 1 8.5803 -3.8399 9.8506 46 1 5.6951 2.6049 1.3571 47 1 4.1872 1.7122 1.8421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692283168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:25 Heat of formation + Delta-G solvation = -25.423083 kcal Electronic energy + Delta-G solvation = -27380.006293 eV Core-core repulsion = 23497.435472 eV Total energy + Delta-G solvation = -3882.570821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88733 -39.44043 -38.62580 -36.87330 -34.79427 -33.77767 -32.39041 -30.91705 -29.64227 -28.70325 -26.80997 -26.50276 -25.43971 -24.28070 -23.52210 -21.63680 -20.56215 -19.94557 -19.32144 -17.84337 -17.39047 -17.08756 -16.46109 -16.26871 -16.03640 -15.53916 -15.00258 -14.81441 -14.76946 -14.57435 -14.36449 -14.00186 -13.92952 -13.63791 -13.56202 -13.10514 -12.99703 -12.81739 -12.52287 -12.43196 -12.30013 -12.18129 -11.83055 -11.56446 -11.48341 -11.35262 -11.05471 -11.03535 -10.98517 -10.79571 -10.72819 -10.64162 -9.77330 -9.30727 -9.21078 -9.03281 -8.90524 -8.72940 -8.17858 -6.45082 -6.17784 -3.87849 2.12611 2.52357 3.10501 3.21488 3.24928 3.30600 3.35601 3.40876 3.76965 3.88829 3.98896 4.24176 4.27114 4.31313 4.48205 4.57044 4.61464 4.71186 4.85633 4.93618 5.00290 5.04597 5.10150 5.17087 5.24077 5.28414 5.29981 5.32846 5.37160 5.44798 5.47755 5.51131 5.67574 5.72178 5.74413 5.84062 5.91624 5.97595 6.10511 6.19414 6.20575 6.53528 6.68040 6.75167 7.63181 7.74078 7.83256 8.39044 8.73483 9.27285 10.89649 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002054 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.129795 B =13627.759380 C =14227.904241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.618 5.618 4 C 0.100 3.900 5 C -0.118 4.118 6 C 0.015 3.985 7 H 0.117 0.883 8 N -0.456 5.456 9 C 0.004 3.996 10 C -0.120 4.120 11 C 0.131 3.869 12 N -0.738 5.738 13 C 0.530 3.470 14 O -0.517 6.517 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.005 4.005 26 C 0.493 3.507 27 O -0.515 6.515 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 15.597 -26.295 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.353 5.353 4 C -0.024 4.024 5 C -0.157 4.157 6 C -0.098 4.098 7 H 0.135 0.865 8 N -0.177 5.177 9 C -0.125 4.125 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.392 5.392 13 C 0.315 3.685 14 O -0.392 6.392 15 C -0.303 4.303 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.133 4.133 26 C 0.279 3.721 27 O -0.391 6.391 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.227 15.100 -24.919 32.425 hybrid contribution 2.125 -0.472 -0.652 2.272 sum -12.101 14.628 -25.571 31.848 Atomic orbital electron populations 1.22142 0.95588 1.02603 1.02326 1.21407 0.94535 0.80884 1.03473 1.48426 1.65640 1.13899 1.07342 1.22154 0.99636 0.93000 0.87585 1.22597 1.01047 0.98467 0.93545 1.23052 0.96253 0.94385 0.96061 0.86528 1.68809 1.12209 1.28510 1.08209 1.24158 0.98505 1.01710 0.88133 1.23113 0.99437 0.97414 0.93974 1.21281 0.85631 0.95474 0.96927 1.45999 1.10118 1.42661 1.40448 1.20294 0.90980 0.78477 0.78706 1.90705 1.38909 1.59638 1.49912 1.23526 0.96470 1.04302 1.06006 1.85419 1.12636 1.44129 1.41272 1.22875 0.93384 1.26967 1.25044 0.90959 1.24998 0.98507 0.95349 0.94810 1.70028 1.32652 1.26388 1.21245 0.86165 0.82867 0.77924 0.78523 1.20281 1.20779 1.19723 1.24328 0.99427 0.93772 0.95781 1.21673 0.76990 0.88554 0.84889 1.90780 1.52573 1.75178 1.20575 0.92176 0.92551 0.91207 0.90269 0.89715 0.90108 0.90925 0.88666 0.89297 0.88321 0.89083 0.87805 0.91469 0.90780 0.77013 0.89345 0.89274 0.92224 0.89322 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.12 0.85 6.65 -4.04 -0.03 0.82 16 3 N -0.62 -4.68 2.93 -172.41 -0.51 -5.19 16 4 C 0.10 0.43 7.35 -3.12 -0.02 0.40 16 5 C -0.12 -0.54 6.79 -25.10 -0.17 -0.71 16 6 C 0.02 0.11 3.08 -67.72 -0.21 -0.09 16 7 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 8 N -0.46 -3.93 6.21 -230.30 -1.43 -5.36 16 9 C 0.00 0.03 7.23 -2.77 -0.02 0.01 16 10 C -0.12 -1.20 3.94 -89.69 -0.35 -1.55 16 11 C 0.13 1.79 5.53 -4.04 -0.02 1.77 16 12 N -0.74 -10.80 5.56 -60.29 -0.33 -11.14 16 13 C 0.53 10.59 7.85 -10.98 -0.09 10.50 16 14 O -0.52 -12.62 15.86 5.56 0.09 -12.54 16 15 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 17 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 21 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.00 -0.05 6.85 -2.77 -0.02 -0.06 16 26 C 0.49 4.90 5.55 -10.86 -0.06 4.84 16 27 O -0.52 -7.12 13.72 5.56 0.08 -7.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.46 7.90 -51.93 -0.41 0.05 16 37 H 0.10 1.11 5.81 -51.93 -0.30 0.81 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 42 H 0.40 4.52 8.47 -40.82 -0.35 4.18 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.99 4.85 -51.93 -0.25 0.74 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -37.21 393.79 -10.44 -47.65 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.58 Total: 1.82 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.19 Total: -1.01 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -1.54 Total: -47.60 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.16 Total: -19.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.21 -10.44 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692283168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.225 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds