Wall clock time and date at job start Wed Apr 1 2020 00:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 N 1.46498 * 109.47501 * 124.99812 * 3 2 1 5 5 C 1.46768 * 124.34879 * 89.99466 * 4 3 2 6 6 C 1.54480 * 105.55098 * 197.08340 * 5 4 3 7 7 C 1.54631 * 101.76472 * 334.54015 * 6 5 4 8 8 H 1.09000 * 110.48694 * 143.47575 * 7 6 5 9 9 N 1.46891 * 110.48935 * 265.98727 * 7 6 5 10 10 C 1.46901 * 111.00119 * 204.99769 * 9 7 6 11 11 C 1.52999 * 109.47082 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47388 * 295.00062 * 11 10 9 13 13 C 1.52996 * 109.47199 * 175.00388 * 11 10 9 14 14 N 1.46502 * 109.47256 * 55.00155 * 11 10 9 15 15 C 1.34779 * 120.00014 * 205.00149 * 14 11 10 16 16 O 1.21283 * 120.00023 * 359.97438 * 15 14 11 17 17 C 1.50700 * 119.99892 * 179.97438 * 15 14 11 18 18 S 1.80997 * 109.46978 * 179.97438 * 17 15 14 19 19 C 1.76211 * 99.99913 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99563 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99870 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47064 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47277 * 120.00371 * 23 21 19 26 26 H 1.48500 * 109.47189 * 240.00710 * 23 21 19 27 27 C 1.34621 * 124.47196 * 270.02709 * 4 3 2 28 28 O 1.21280 * 124.90469 * 359.57880 * 27 4 3 29 29 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 30 30 H 1.07992 * 119.99937 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00163 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47506 * 4.99893 * 3 2 1 33 33 H 1.08998 * 109.47494 * 244.99712 * 3 2 1 34 34 H 1.09002 * 110.24468 * 78.03845 * 5 4 3 35 35 H 1.09002 * 110.24463 * 316.12602 * 5 4 3 36 36 H 1.08995 * 110.97082 * 92.66028 * 6 5 4 37 37 H 1.08996 * 110.96783 * 216.38630 * 6 5 4 38 38 H 1.00909 * 110.99726 * 81.04508 * 9 7 6 39 39 H 1.08997 * 109.47237 * 300.00004 * 10 9 7 40 40 H 1.08999 * 109.46640 * 60.00167 * 10 9 7 41 41 H 1.09006 * 109.47431 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47139 * 299.99486 * 13 11 10 43 43 H 1.08998 * 109.47420 * 59.99840 * 13 11 10 44 44 H 0.96998 * 119.99987 * 24.99990 * 14 11 10 45 45 H 1.09002 * 109.47168 * 300.00360 * 17 15 14 46 46 H 1.09007 * 109.46838 * 59.99956 * 17 15 14 47 47 H 0.97008 * 119.99677 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3792 0.8508 1.0760 6 6 4.8128 0.6667 2.5472 7 6 3.8828 1.6634 3.2771 8 1 3.5754 1.2614 4.2426 9 7 4.5527 2.9590 3.4509 10 6 3.9934 3.6917 4.5946 11 6 4.7143 5.0330 4.7430 12 1 5.7599 4.8576 4.9964 13 6 4.0504 5.8488 5.8540 14 7 4.6352 5.7722 3.4805 15 6 5.5686 6.6974 3.1817 16 8 6.4738 6.9184 3.9582 17 6 5.4876 7.4573 1.8829 18 16 6.8723 8.6179 1.7756 19 6 6.5385 9.3483 0.2071 20 1 5.6781 9.0317 -0.3638 21 6 7.3806 10.3311 -0.2941 22 7 8.4290 10.7173 0.4020 23 14 7.0263 11.1059 -1.9565 24 1 5.7979 10.5022 -2.5323 25 1 6.8271 12.5678 -1.7890 26 1 8.1721 10.8640 -2.8697 27 6 2.6901 1.8001 2.3566 28 8 1.6157 2.2633 2.6758 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 5.0149 1.5874 0.5847 35 1 4.4270 -0.1009 0.5467 36 1 4.6307 -0.3542 2.8827 37 1 5.8596 0.9386 2.6822 38 1 4.4989 3.5099 2.6072 39 1 2.9305 3.8674 4.4290 40 1 4.1274 3.1044 5.5030 41 1 4.5637 6.8046 5.9594 42 1 3.0048 6.0244 5.6006 43 1 4.1092 5.2989 6.7933 44 1 3.9112 5.5957 2.8597 45 1 5.5343 6.7572 1.0488 46 1 4.5480 8.0085 1.8424 47 1 9.0178 11.4040 0.0515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699394162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:22 Heat of formation + Delta-G solvation = -46.446306 kcal Electronic energy + Delta-G solvation = -27219.427296 eV Core-core repulsion = 23335.944840 eV Total energy + Delta-G solvation = -3883.482456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01578 -39.38154 -36.99236 -36.81184 -35.36061 -33.66842 -32.42216 -31.60533 -30.59506 -28.52021 -27.47326 -26.54872 -25.47852 -24.72241 -22.07107 -21.53466 -20.61695 -20.25179 -19.81997 -17.91392 -17.32973 -16.95648 -16.63801 -16.29046 -16.00154 -15.31402 -14.89424 -14.84991 -14.80095 -14.52613 -14.31973 -14.10792 -14.01060 -13.56368 -13.32483 -13.12296 -13.01815 -12.78060 -12.63569 -12.48786 -12.19782 -12.01925 -11.90741 -11.77786 -11.58796 -11.46409 -11.06956 -11.01158 -10.95059 -10.74431 -10.62128 -9.94114 -9.79544 -9.34542 -9.14713 -9.07208 -8.89277 -8.73210 -8.21638 -6.48469 -6.21186 -3.91213 1.67502 2.13476 2.73884 3.04920 3.13677 3.21643 3.28457 3.33133 3.63212 3.78362 3.92457 4.10302 4.20973 4.42300 4.54384 4.63464 4.65530 4.71195 4.87232 5.02409 5.07777 5.13826 5.14316 5.18380 5.24196 5.29039 5.41153 5.45271 5.46680 5.52976 5.59694 5.64509 5.71520 5.90367 6.05178 6.08837 6.11998 6.15156 6.18916 6.24843 6.50503 6.69269 6.69843 6.85064 7.60427 7.72102 7.76143 8.36044 8.65713 9.24335 10.86247 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.002564 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.831057 B =10917.070279 C =12662.067951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.150 3.850 4 N -0.614 5.614 5 C 0.097 3.903 6 C -0.125 4.125 7 C 0.057 3.943 8 H 0.112 0.888 9 N -0.656 5.656 10 C 0.046 3.954 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.163 4.163 14 N -0.735 5.735 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.486 3.514 28 O -0.526 6.526 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.347 0.653 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.392 0.608 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -24.930 2.778 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.029 3.971 4 N -0.348 5.348 5 C -0.026 4.026 6 C -0.163 4.163 7 C -0.056 4.056 8 H 0.130 0.870 9 N -0.288 5.288 10 C -0.083 4.083 11 C 0.041 3.959 12 H 0.115 0.885 13 C -0.222 4.222 14 N -0.390 5.390 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.271 3.729 28 O -0.401 6.401 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.167 0.833 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.225 0.775 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.178 -24.439 4.570 27.260 hybrid contribution -2.562 0.323 -2.799 3.808 sum -13.740 -24.116 1.771 27.812 Atomic orbital electron populations 1.23930 0.95888 1.02236 0.98496 1.23238 0.96334 0.98677 1.01674 1.20495 0.91986 0.96044 0.88584 1.48387 1.13174 1.62051 1.11195 1.22218 0.81575 1.00387 0.98409 1.22701 1.01726 0.98886 0.92989 1.22405 0.91066 0.92958 0.99181 0.87042 1.60696 1.55397 1.04162 1.08571 1.22452 0.97182 0.94101 0.94555 1.20925 1.01662 0.88995 0.84331 0.88458 1.22161 1.00801 1.01355 0.97904 1.46090 1.29883 1.41509 1.21512 1.20242 0.80945 0.78858 0.87788 1.90699 1.33442 1.64387 1.50314 1.23537 1.07265 1.02947 0.96703 1.85395 1.28732 1.42809 1.26290 1.22907 1.14911 1.25662 1.04779 0.90960 1.24991 0.94506 0.95856 0.98273 1.70032 1.13659 1.29110 1.37468 0.86122 0.78339 0.78916 0.82147 1.19655 1.20581 1.20570 1.22053 0.89639 0.77291 0.83881 1.90729 1.26019 1.45004 1.78338 0.88242 0.88206 0.87214 0.89581 0.89271 0.90427 0.90250 0.89671 0.87532 0.83344 0.93516 0.89171 0.91316 0.92624 0.91740 0.77456 0.89396 0.89405 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 14.32 29.01 0.42 -0.75 16 2 C -0.18 -1.25 9.85 -36.03 -0.35 -1.61 16 3 C 0.15 1.12 6.38 -5.19 -0.03 1.08 16 4 N -0.61 -4.94 2.92 -173.72 -0.51 -5.45 16 5 C 0.10 0.54 7.34 -3.12 -0.02 0.52 16 6 C -0.12 -0.68 6.89 -25.10 -0.17 -0.85 16 7 C 0.06 0.45 3.25 -67.73 -0.22 0.23 16 8 H 0.11 0.83 7.82 -51.93 -0.41 0.42 16 9 N -0.66 -5.97 6.30 -106.74 -0.67 -6.64 16 10 C 0.05 0.43 5.15 -3.82 -0.02 0.41 16 11 C 0.15 1.72 2.88 -67.93 -0.20 1.53 16 12 H 0.10 1.35 7.58 -51.92 -0.39 0.96 16 13 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 14 N -0.74 -9.86 4.36 -53.80 -0.23 -10.10 16 15 C 0.54 9.91 7.81 -10.98 -0.09 9.82 16 16 O -0.51 -11.55 15.53 5.55 0.09 -11.47 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.49 4.99 7.37 -10.77 -0.08 4.91 16 28 O -0.53 -7.42 17.58 5.56 0.10 -7.32 16 29 H 0.10 0.72 7.84 -52.48 -0.41 0.30 16 30 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.09 0.76 7.58 -51.93 -0.39 0.36 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.35 3.45 7.29 -39.29 -0.29 3.16 16 39 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 4.47 8.15 -40.82 -0.33 4.13 16 45 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 409.29 15.07 6.17 6.17 Total: -1.00 -36.05 409.29 -9.24 -45.29 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.68 Total: 4.36 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.00 Total: -2.02 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.68 Total: -47.61 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.05 -9.24 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.158 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds