Wall clock time and date at job start Wed Apr 1 2020 00:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00296 * 2 1 4 4 N 1.46492 * 109.47611 * 124.99934 * 3 2 1 5 5 C 1.46762 * 124.35171 * 89.99929 * 4 3 2 6 6 C 1.54477 * 105.47565 * 162.98904 * 5 4 3 7 7 C 1.54626 * 101.76511 * 25.41374 * 6 5 4 8 8 H 1.08997 * 110.48658 * 216.39141 * 7 6 5 9 9 N 1.46905 * 110.48451 * 93.88374 * 7 6 5 10 10 C 1.46901 * 110.99870 * 155.00159 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46893 * 294.99849 * 11 10 9 13 13 C 1.52997 * 109.46820 * 175.00024 * 11 10 9 14 14 N 1.46498 * 109.46921 * 54.99831 * 11 10 9 15 15 C 1.34779 * 119.99331 * 204.99566 * 14 11 10 16 16 O 1.21273 * 120.00521 * 0.02562 * 15 14 11 17 17 C 1.50701 * 119.99711 * 179.97438 * 15 14 11 18 18 S 1.80994 * 109.47189 * 180.02562 * 17 15 14 19 19 C 1.76205 * 100.00262 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00380 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46892 * 59.99984 * 23 21 19 25 25 H 1.48496 * 109.47346 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46850 * 300.00339 * 23 21 19 27 27 C 1.34425 * 124.34997 * 270.00345 * 4 3 2 28 28 O 1.21280 * 124.93769 * 0.44288 * 27 4 3 29 29 H 1.08006 * 119.99814 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.08010 * 119.99897 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46720 * 4.99352 * 3 2 1 33 33 H 1.09003 * 109.47258 * 245.00414 * 3 2 1 34 34 H 1.08999 * 110.24646 * 43.98245 * 5 4 3 35 35 H 1.09000 * 110.24577 * 281.98947 * 5 4 3 36 36 H 1.09001 * 110.96835 * 267.29510 * 6 5 4 37 37 H 1.08998 * 110.97405 * 143.53569 * 6 5 4 38 38 H 1.00901 * 110.99869 * 31.04870 * 9 7 6 39 39 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 40 40 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 41 41 H 1.08999 * 109.47245 * 299.99610 * 13 11 10 42 42 H 1.08998 * 109.47499 * 59.99928 * 13 11 10 43 43 H 1.09004 * 109.46976 * 180.02562 * 13 11 10 44 44 H 0.96994 * 120.00657 * 24.99927 * 14 11 10 45 45 H 1.08998 * 109.47409 * 300.01004 * 17 15 14 46 46 H 1.09007 * 109.47101 * 60.00551 * 17 15 14 47 47 H 0.96995 * 120.00432 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3792 0.8508 1.0759 6 6 5.0780 1.4635 2.3099 7 6 3.8862 1.6840 3.2700 8 1 4.0219 2.6018 3.8421 9 7 3.7336 0.5349 4.1725 10 6 3.0591 0.9287 5.4167 11 6 2.9193 -0.2915 6.3291 12 1 2.2584 -1.0212 5.8613 13 6 2.3307 0.1417 7.6733 14 7 4.2373 -0.8938 6.5444 15 6 4.3374 -2.1997 6.8627 16 8 3.3367 -2.8761 6.9703 17 6 5.6932 -2.8195 7.0836 18 16 5.4962 -4.5717 7.4921 19 6 7.1855 -5.0308 7.6932 20 1 7.9646 -4.2948 7.5597 21 6 7.5147 -6.3379 8.0243 22 7 6.5651 -7.2347 8.1875 23 14 9.3055 -6.8244 8.2382 24 1 9.9117 -6.0153 9.3259 25 1 9.3887 -8.2654 8.5873 26 1 10.0398 -6.5794 6.9709 27 6 2.6881 1.8003 2.3537 28 8 1.6086 2.2501 2.6752 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 4.8612 1.1936 0.1604 35 1 4.4030 -0.2376 1.1307 36 1 5.5559 2.4101 2.0575 37 1 5.7987 0.7659 2.7365 38 1 4.6261 0.1056 4.3652 39 1 3.6475 1.6944 5.9223 40 1 2.0704 1.3244 5.1845 41 1 2.9916 0.8713 8.1411 42 1 1.3501 0.5898 7.5131 43 1 2.2315 -0.7275 8.3235 44 1 5.0377 -0.3529 6.4580 45 1 6.2891 -2.7230 6.1760 46 1 6.1967 -2.3090 7.9047 47 1 6.7951 -8.1480 8.4192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699394163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:23 Heat of formation + Delta-G solvation = -72.676163 kcal Electronic energy + Delta-G solvation = -27087.855499 eV Core-core repulsion = 23203.235631 eV Total energy + Delta-G solvation = -3884.619868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56595 -40.73142 -38.02394 -37.49754 -36.15874 -34.57012 -34.50858 -32.75082 -31.24378 -29.93587 -28.11365 -27.62977 -27.18930 -25.41279 -23.02872 -22.47523 -21.54414 -21.13524 -20.26444 -19.83579 -18.00703 -17.85352 -17.53799 -17.36272 -16.85417 -16.61355 -16.37912 -16.28880 -15.94401 -15.81954 -15.21214 -14.89053 -14.71076 -14.61770 -14.45014 -14.25085 -14.01290 -13.83520 -13.66345 -13.38256 -13.19351 -13.13746 -13.01428 -12.84332 -12.67693 -12.57701 -12.44025 -12.33001 -12.08634 -11.82080 -11.70242 -11.10340 -11.07764 -10.88080 -10.43943 -10.22962 -10.12146 -9.73300 -9.47297 -8.63513 -8.31832 -6.09694 1.13865 1.29562 1.45709 1.49292 1.51805 1.58924 1.68755 2.22772 2.27891 2.32727 3.02237 3.08721 3.32233 3.36152 3.53584 3.83313 3.92318 3.98515 4.05678 4.10313 4.14303 4.27931 4.30562 4.37601 4.39136 4.47958 4.55151 4.61460 4.66512 4.72237 4.73206 4.76570 4.93692 4.97308 5.05423 5.09961 5.24156 5.44094 5.53262 5.54389 5.60964 5.72959 5.81593 6.12065 6.22188 6.34443 6.55477 7.09336 7.16872 7.32064 8.77079 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002240 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.846337 B =12496.552296 C =13116.123842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.185 4.185 3 C 0.151 3.849 4 N -0.611 5.611 5 C 0.100 3.900 6 C -0.125 4.125 7 C 0.056 3.944 8 H 0.093 0.907 9 N -0.682 5.682 10 C 0.066 3.934 11 C 0.150 3.850 12 H 0.059 0.941 13 C -0.158 4.158 14 N -0.704 5.704 15 C 0.537 3.463 16 O -0.566 6.566 17 C -0.127 4.127 18 S -0.157 6.157 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.260 1.260 27 C 0.518 3.482 28 O -0.579 6.579 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.360 0.640 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.414 0.586 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 24.648 -16.330 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.204 4.204 3 C 0.029 3.971 4 N -0.343 5.343 5 C -0.022 4.022 6 C -0.163 4.163 7 C -0.057 4.057 8 H 0.110 0.890 9 N -0.319 5.319 10 C -0.063 4.063 11 C 0.045 3.955 12 H 0.077 0.923 13 C -0.217 4.217 14 N -0.359 5.359 15 C 0.323 3.677 16 O -0.444 6.444 17 C -0.278 4.278 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.185 1.185 27 C 0.305 3.695 28 O -0.458 6.458 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.183 0.817 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.251 0.749 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.155 23.396 -16.340 28.711 hybrid contribution 2.322 0.457 0.571 2.434 sum -0.834 23.854 -15.769 28.607 Atomic orbital electron populations 1.24022 0.96206 1.02430 0.98929 1.23378 0.96512 0.99255 1.01271 1.20571 0.92112 0.95061 0.89328 1.48387 1.14423 1.60660 1.10826 1.22306 0.79411 0.99715 1.00738 1.22924 0.95497 1.04269 0.93603 1.22231 0.93964 0.95144 0.94313 0.88977 1.59981 1.28987 1.28067 1.14868 1.22220 1.00764 0.94859 0.88480 1.20893 0.84405 0.94590 0.95576 0.92254 1.22101 1.02092 1.01350 0.96157 1.45708 1.09808 1.08806 1.71548 1.20058 0.89936 0.82384 0.75328 1.90701 1.39605 1.62696 1.51406 1.23358 0.97799 1.00214 1.06418 1.85674 1.12450 1.03467 1.91355 1.23173 0.92088 0.98830 1.55038 0.89708 1.26142 1.03805 0.95315 0.94052 1.70187 1.35124 1.03829 1.45830 0.85006 0.76439 0.77172 0.79397 1.18648 1.20684 1.18461 1.21380 0.88954 0.75423 0.83700 1.90659 1.27893 1.48385 1.78843 0.87816 0.88344 0.87124 0.90953 0.86520 0.87535 0.91126 0.86942 0.86954 0.81694 0.91354 0.90464 0.90305 0.90465 0.94394 0.74896 0.86783 0.87242 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 14.32 67.78 0.97 -2.19 16 2 C -0.19 -3.19 9.85 25.65 0.25 -2.94 16 3 C 0.15 2.19 6.37 85.63 0.55 2.74 16 4 N -0.61 -9.73 2.92 -822.35 -2.40 -12.12 16 5 C 0.10 0.88 7.35 86.83 0.64 1.52 16 6 C -0.13 -0.77 6.84 31.65 0.22 -0.56 16 7 C 0.06 0.77 3.26 44.91 0.15 0.92 16 8 H 0.09 1.08 7.82 -2.39 -0.02 1.06 16 9 N -0.68 -11.22 6.34 -491.60 -3.12 -14.33 16 10 C 0.07 1.15 5.15 86.30 0.44 1.59 16 11 C 0.15 3.48 2.88 44.99 0.13 3.61 16 12 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 13 C -0.16 -3.45 9.48 71.98 0.68 -2.77 16 14 N -0.70 -16.30 4.36 -442.54 -1.93 -18.23 16 15 C 0.54 19.08 7.81 87.66 0.68 19.77 16 16 O -0.57 -26.32 15.52 -3.01 -0.05 -26.37 16 17 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 18 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 19 C -0.54 -30.44 9.50 67.95 0.65 -29.79 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.64 5.49 84.86 0.47 1.11 16 22 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 23 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 C 0.52 11.16 7.64 87.90 0.67 11.83 16 28 O -0.58 -17.73 17.57 -3.03 -0.05 -17.78 16 29 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.10 1.69 7.84 -2.91 -0.02 1.66 16 31 H 0.11 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.07 1.24 7.58 -2.38 -0.02 1.22 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.11 0.40 7.56 -2.39 -0.02 0.39 16 38 H 0.36 4.70 6.90 -89.69 -0.62 4.08 16 39 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 40 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.41 6.14 8.15 -92.71 -0.76 5.38 16 45 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 46 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 47 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -85.88 408.62 0.14 -85.75 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.40 Total: 23.14 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 6.93 Total: 0.52 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -7.16 Total: -100.40 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.10 Total: -44.15 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -85.88 0.14 -85.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.069 kcal (2) G-P(sol) polarization free energy of solvation -85.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds