Wall clock time and date at job start Wed Apr 1 2020 00:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99665 * 2 1 4 4 O 1.21283 * 119.99990 * 359.71991 * 3 2 1 5 5 C 1.50698 * 119.99538 * 179.72653 * 3 2 1 6 6 H 1.08993 * 109.47916 * 59.99687 * 5 3 2 7 7 C 1.53001 * 109.47207 * 299.99218 * 5 3 2 8 8 N 1.46899 * 109.46987 * 179.97438 * 5 3 2 9 9 C 1.48529 * 110.99750 * 295.40094 * 8 5 3 10 10 C 1.54309 * 104.68747 * 200.77162 * 9 8 5 11 11 H 1.09000 * 112.87671 * 261.53418 * 10 9 8 12 12 C 1.56218 * 109.25711 * 135.03974 * 10 9 8 13 13 N 1.47202 * 106.48327 * 228.87555 * 12 10 9 14 14 C 1.34775 * 126.69811 * 211.83218 * 13 12 10 15 15 O 1.21286 * 119.99969 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00489 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47473 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00407 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99496 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47278 * 89.99974 * 22 20 18 24 24 H 1.48501 * 109.46975 * 210.00287 * 22 20 18 25 25 H 1.48508 * 109.47063 * 329.99942 * 22 20 18 26 26 C 1.47202 * 106.59559 * 31.83075 * 13 12 10 27 27 C 1.53759 * 106.40291 * 328.67613 * 26 13 12 28 28 H 1.08998 * 112.04210 * 255.55027 * 27 26 13 29 29 C 1.48526 * 111.00174 * 179.97438 * 8 5 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 1 2 3 31 31 H 1.08998 * 109.47377 * 180.28122 * 1 2 3 32 32 H 1.09009 * 109.47454 * 300.27637 * 1 2 3 33 33 H 0.97001 * 119.99790 * 179.71713 * 2 1 3 34 34 H 1.09001 * 109.47038 * 60.00421 * 7 5 3 35 35 H 1.08995 * 109.47475 * 180.02562 * 7 5 3 36 36 H 1.09001 * 109.47406 * 300.00436 * 7 5 3 37 37 H 1.08996 * 110.39505 * 319.56987 * 9 8 5 38 38 H 1.08996 * 110.39452 * 81.97041 * 9 8 5 39 39 H 1.09002 * 109.60269 * 109.84376 * 12 10 9 40 40 H 1.09002 * 110.45413 * 348.37254 * 12 10 9 41 41 H 1.09002 * 109.47337 * 300.00245 * 16 14 13 42 42 H 1.08995 * 109.47399 * 59.99990 * 16 14 13 43 43 H 0.97001 * 119.99665 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06750 * 209.43804 * 26 13 12 45 45 H 1.09001 * 110.06866 * 87.91590 * 26 13 12 46 46 H 1.09002 * 110.39439 * 278.02612 * 29 8 5 47 47 H 1.08999 * 110.39209 * 40.30808 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 -0.0051 5 6 3.6458 1.1672 0.0062 6 1 4.0129 0.6513 -0.8809 7 6 4.1506 0.4491 1.2594 8 7 4.1354 2.5522 0.0043 9 6 3.7572 3.2487 -1.2518 10 6 4.7441 4.4303 -1.3564 11 1 4.3190 5.3700 -1.0035 12 6 5.2875 4.5200 -2.8183 13 7 6.7516 4.6309 -2.7136 14 6 7.5711 5.2940 -3.5533 15 8 8.7668 5.3063 -3.3499 16 6 7.0021 6.0203 -4.7448 17 16 8.3445 6.8063 -5.6699 18 6 7.4215 7.5591 -6.9684 19 1 6.3477 7.4481 -7.0021 20 6 8.0742 8.2956 -7.9473 21 7 9.3829 8.4312 -7.9058 22 14 7.0956 9.0942 -9.3233 23 1 6.6917 10.4632 -8.9136 24 1 7.9336 9.1707 -10.5469 25 1 5.8833 8.2835 -9.6036 26 6 7.1456 3.8762 -1.5128 27 6 5.9763 3.9959 -0.5216 28 1 6.1939 4.6959 0.2851 29 6 5.6202 2.5919 0.0110 30 1 -0.3634 0.5095 -0.8924 31 1 -0.3634 -1.0276 0.0050 32 1 -0.3634 0.5181 0.8875 33 1 1.9500 -0.8401 0.0041 34 1 3.7873 -0.5786 1.2604 35 1 5.2406 0.4495 1.2642 36 1 3.7836 0.9651 2.1466 37 1 3.8723 2.5811 -2.1057 38 1 2.7323 3.6142 -1.1897 39 1 4.8792 5.4050 -3.3065 40 1 5.0192 3.6252 -3.3799 41 1 6.4832 5.3106 -5.3891 42 1 6.3008 6.7823 -4.4049 43 1 9.8391 8.9456 -8.5901 44 1 8.0486 4.3068 -1.0799 45 1 7.3146 2.8298 -1.7674 46 1 5.9991 2.4624 1.0248 47 1 6.0236 1.8212 -0.6458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699985742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:24 Heat of formation + Delta-G solvation = -50.798581 kcal Electronic energy + Delta-G solvation = -27416.912199 eV Core-core repulsion = 23533.241014 eV Total energy + Delta-G solvation = -3883.671185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97007 -39.87924 -38.41461 -36.09868 -35.04372 -33.10808 -32.42091 -31.17805 -29.97241 -28.80763 -27.43554 -26.09510 -25.47570 -24.83882 -23.19106 -21.80828 -20.54604 -19.83281 -19.25408 -17.79001 -17.65395 -17.01294 -16.65992 -16.02990 -15.89378 -15.40220 -15.38011 -14.99305 -14.79679 -14.58349 -14.47843 -13.87762 -13.58117 -13.41040 -13.11351 -12.92801 -12.85813 -12.69849 -12.66010 -12.46716 -12.45065 -12.29271 -11.86347 -11.78154 -11.57925 -11.15403 -11.06072 -11.03662 -11.00791 -10.86204 -10.74636 -10.07790 -9.80829 -9.58356 -9.41763 -9.05889 -8.83015 -8.55738 -8.22874 -6.49701 -6.20908 -3.91564 2.24836 2.63415 2.91808 3.04282 3.23207 3.26830 3.31140 3.53394 3.64153 4.06065 4.19348 4.21067 4.30779 4.46796 4.53584 4.64471 4.76468 4.78477 5.00428 5.00755 5.01575 5.05479 5.10127 5.14219 5.16588 5.21705 5.33593 5.36234 5.47649 5.51017 5.53133 5.58570 5.63539 5.73187 5.84683 5.86068 5.93436 5.98740 6.03716 6.14469 6.39313 6.44013 6.49453 7.01878 7.60367 7.69786 7.83055 8.36076 8.55080 9.24328 10.86529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002098 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.864165 B =13344.647117 C =14473.628094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.517 3.483 4 O -0.517 6.517 5 C 0.053 3.947 6 H 0.069 0.931 7 C -0.142 4.142 8 N -0.488 5.488 9 C 0.040 3.960 10 C -0.097 4.097 11 H 0.102 0.898 12 C 0.105 3.895 13 N -0.625 5.625 14 C 0.552 3.448 15 O -0.515 6.515 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.112 3.888 27 C -0.101 4.101 28 H 0.098 0.902 29 C 0.040 3.960 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.133 -20.744 19.286 32.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.303 3.697 4 O -0.391 6.391 5 C -0.060 4.060 6 H 0.087 0.913 7 C -0.200 4.200 8 N -0.213 5.213 9 C -0.087 4.087 10 C -0.117 4.117 11 H 0.120 0.880 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.341 3.659 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.011 4.011 27 C -0.121 4.121 28 H 0.117 0.883 29 C -0.088 4.088 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.811 -19.573 19.885 31.589 hybrid contribution -1.576 -0.472 -1.845 2.472 sum -16.387 -20.045 18.040 31.556 Atomic orbital electron populations 1.21529 0.79380 1.02207 1.02460 1.45798 1.07841 1.08663 1.76879 1.20477 0.89639 0.83713 0.75920 1.90707 1.69951 1.30978 1.47427 1.21790 0.92191 0.91847 1.00154 0.91328 1.21813 1.02259 0.99303 0.96651 1.65308 1.08525 1.11465 1.35963 1.23319 1.00998 0.94518 0.89880 1.23139 0.94780 0.99513 0.94286 0.87983 1.22617 0.80686 1.02441 0.96160 1.48534 1.07315 1.53179 1.27125 1.20028 0.85880 0.77405 0.82626 1.90710 1.14703 1.60285 1.73230 1.23509 1.06162 1.02402 0.97676 1.85390 1.06530 1.63890 1.27575 1.22858 0.95483 1.37854 1.12084 0.90926 1.24998 0.95142 0.95729 0.97752 1.70022 1.07381 1.38608 1.34259 0.86160 0.79476 0.79478 0.80341 1.20244 1.20753 1.19699 1.22045 0.97783 0.96180 0.85106 1.22704 0.94601 0.96885 0.97930 0.88350 1.23305 0.87806 0.96081 1.01629 0.92175 0.90672 0.92164 0.76599 0.91733 0.91036 0.90980 0.93722 0.88032 0.90046 0.91410 0.89327 0.89215 0.92188 0.90002 0.91821 0.89483 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.70 59.85 0.64 1.06 16 2 N -0.74 -3.89 5.61 -67.08 -0.38 -4.27 16 3 C 0.52 4.40 6.92 -10.99 -0.08 4.33 16 4 O -0.52 -6.53 14.42 5.55 0.08 -6.45 16 5 C 0.05 0.36 2.25 -68.87 -0.16 0.21 16 6 H 0.07 0.40 7.97 -51.93 -0.41 -0.01 16 7 C -0.14 -0.66 8.94 37.16 0.33 -0.33 16 8 N -0.49 -4.33 4.94 -223.55 -1.11 -5.43 16 9 C 0.04 0.39 5.22 -2.24 -0.01 0.38 16 10 C -0.10 -0.97 4.22 -87.13 -0.37 -1.33 16 11 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 12 C 0.11 1.21 6.44 -1.93 -0.01 1.20 16 13 N -0.62 -9.30 3.32 -170.06 -0.56 -9.86 16 14 C 0.55 10.93 7.90 -10.99 -0.09 10.84 16 15 O -0.52 -12.18 16.09 5.55 0.09 -12.09 16 16 C -0.15 -3.09 5.13 36.00 0.18 -2.90 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.11 1.35 6.55 -3.26 -0.02 1.33 16 27 C -0.10 -0.96 4.02 -88.45 -0.36 -1.31 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 C 0.04 0.30 4.88 -2.23 -0.01 0.29 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.40 0.91 8.25 -40.82 -0.34 0.58 16 34 H 0.06 0.16 7.56 -51.93 -0.39 -0.23 16 35 H 0.07 0.29 6.93 -51.93 -0.36 -0.07 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.41 6.95 -51.93 -0.36 0.05 16 38 H 0.10 1.15 6.56 -51.93 -0.34 0.81 16 39 H 0.08 0.94 7.31 -51.93 -0.38 0.56 16 40 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.76 7.86 -51.92 -0.41 1.35 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 45 H 0.06 0.70 7.11 -51.93 -0.37 0.33 16 46 H 0.09 0.58 7.66 -51.93 -0.40 0.18 16 47 H 0.05 0.36 7.00 -51.93 -0.36 0.00 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -37.41 386.60 -9.70 -47.12 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.41 Total: -2.56 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.26 Total: 0.65 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -1.31 Total: -45.18 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.17 Total: -18.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.41 -9.70 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.679 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds