Wall clock time and date at job start Wed Apr 1 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99665 * 2 1 4 4 O 1.21283 * 119.99990 * 359.71991 * 3 2 1 5 5 C 1.50698 * 119.99538 * 179.72653 * 3 2 1 6 6 H 1.08993 * 109.47916 * 59.99687 * 5 3 2 7 7 C 1.53001 * 109.47207 * 299.99218 * 5 3 2 8 8 N 1.46899 * 109.46987 * 179.97438 * 5 3 2 9 9 C 1.48529 * 110.99750 * 295.40094 * 8 5 3 10 10 C 1.54309 * 104.68747 * 200.77162 * 9 8 5 11 11 H 1.09000 * 112.87671 * 261.53418 * 10 9 8 12 12 C 1.56218 * 109.25711 * 135.03974 * 10 9 8 13 13 N 1.47202 * 106.48327 * 228.87555 * 12 10 9 14 14 C 1.34775 * 126.69811 * 211.83218 * 13 12 10 15 15 O 1.21286 * 119.99969 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00489 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47473 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00407 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99496 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47278 * 89.99974 * 22 20 18 24 24 H 1.48501 * 109.46975 * 210.00287 * 22 20 18 25 25 H 1.48508 * 109.47063 * 329.99942 * 22 20 18 26 26 C 1.47202 * 106.59559 * 31.83075 * 13 12 10 27 27 C 1.53759 * 106.40291 * 328.67613 * 26 13 12 28 28 H 1.08998 * 112.04210 * 255.55027 * 27 26 13 29 29 C 1.48526 * 111.00174 * 179.97438 * 8 5 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 1 2 3 31 31 H 1.08998 * 109.47377 * 180.28122 * 1 2 3 32 32 H 1.09009 * 109.47454 * 300.27637 * 1 2 3 33 33 H 0.97001 * 119.99790 * 179.71713 * 2 1 3 34 34 H 1.09001 * 109.47038 * 60.00421 * 7 5 3 35 35 H 1.08995 * 109.47475 * 180.02562 * 7 5 3 36 36 H 1.09001 * 109.47406 * 300.00436 * 7 5 3 37 37 H 1.08996 * 110.39505 * 319.56987 * 9 8 5 38 38 H 1.08996 * 110.39452 * 81.97041 * 9 8 5 39 39 H 1.09002 * 109.60269 * 109.84376 * 12 10 9 40 40 H 1.09002 * 110.45413 * 348.37254 * 12 10 9 41 41 H 1.09002 * 109.47337 * 300.00245 * 16 14 13 42 42 H 1.08995 * 109.47399 * 59.99990 * 16 14 13 43 43 H 0.97001 * 119.99665 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06750 * 209.43804 * 26 13 12 45 45 H 1.09001 * 110.06866 * 87.91590 * 26 13 12 46 46 H 1.09002 * 110.39439 * 278.02612 * 29 8 5 47 47 H 1.08999 * 110.39209 * 40.30808 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 -0.0051 5 6 3.6458 1.1672 0.0062 6 1 4.0129 0.6513 -0.8809 7 6 4.1506 0.4491 1.2594 8 7 4.1354 2.5522 0.0043 9 6 3.7572 3.2487 -1.2518 10 6 4.7441 4.4303 -1.3564 11 1 4.3190 5.3700 -1.0035 12 6 5.2875 4.5200 -2.8183 13 7 6.7516 4.6309 -2.7136 14 6 7.5711 5.2940 -3.5533 15 8 8.7668 5.3063 -3.3499 16 6 7.0021 6.0203 -4.7448 17 16 8.3445 6.8063 -5.6699 18 6 7.4215 7.5591 -6.9684 19 1 6.3477 7.4481 -7.0021 20 6 8.0742 8.2956 -7.9473 21 7 9.3829 8.4312 -7.9058 22 14 7.0956 9.0942 -9.3233 23 1 6.6917 10.4632 -8.9136 24 1 7.9336 9.1707 -10.5469 25 1 5.8833 8.2835 -9.6036 26 6 7.1456 3.8762 -1.5128 27 6 5.9763 3.9959 -0.5216 28 1 6.1939 4.6959 0.2851 29 6 5.6202 2.5919 0.0110 30 1 -0.3634 0.5095 -0.8924 31 1 -0.3634 -1.0276 0.0050 32 1 -0.3634 0.5181 0.8875 33 1 1.9500 -0.8401 0.0041 34 1 3.7873 -0.5786 1.2604 35 1 5.2406 0.4495 1.2642 36 1 3.7836 0.9651 2.1466 37 1 3.8723 2.5811 -2.1057 38 1 2.7323 3.6142 -1.1897 39 1 4.8792 5.4050 -3.3065 40 1 5.0192 3.6252 -3.3799 41 1 6.4832 5.3106 -5.3891 42 1 6.3008 6.7823 -4.4049 43 1 9.8391 8.9456 -8.5901 44 1 8.0486 4.3068 -1.0799 45 1 7.3146 2.8298 -1.7674 46 1 5.9991 2.4624 1.0248 47 1 6.0236 1.8212 -0.6458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699985742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:23 Heat of formation + Delta-G solvation = -79.833680 kcal Electronic energy + Delta-G solvation = -27418.171255 eV Core-core repulsion = 23533.241014 eV Total energy + Delta-G solvation = -3884.930241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78827 -40.79120 -39.59571 -37.07872 -35.62641 -34.60315 -33.96804 -32.14801 -31.02030 -29.95442 -27.93291 -27.70612 -26.85359 -25.69146 -24.01366 -22.49503 -21.19679 -20.69223 -20.60309 -19.55121 -18.36413 -18.18731 -17.47818 -16.99921 -16.90146 -16.72580 -16.64585 -16.34653 -15.82535 -15.64311 -15.37201 -15.25113 -14.61977 -14.56823 -14.23049 -13.83561 -13.66779 -13.52055 -13.44296 -13.26130 -13.18237 -13.17649 -13.07736 -13.05259 -12.90158 -12.63934 -12.39436 -12.29831 -11.94622 -11.88323 -11.70773 -11.64542 -11.15783 -10.99773 -10.72662 -10.31213 -10.10574 -9.83275 -9.43139 -8.70019 -8.36205 -6.15065 1.21411 1.41659 1.43189 1.50075 1.54964 1.64739 2.02962 2.18519 2.25612 2.92043 2.97807 3.16579 3.35776 3.42988 3.67040 3.79161 3.88147 4.00307 4.05901 4.15724 4.16647 4.21691 4.29629 4.30367 4.41282 4.47706 4.57768 4.63351 4.66167 4.71150 4.72638 4.78273 4.84523 4.89998 4.96938 5.03710 5.13136 5.20523 5.25938 5.32014 5.40108 5.47783 5.77905 5.91595 6.18235 6.34938 6.59267 7.04698 7.05714 7.30558 8.73095 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002098 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.864165 B =13344.647117 C =14473.628094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.511 3.489 4 O -0.567 6.567 5 C 0.053 3.947 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.504 5.504 9 C 0.049 3.951 10 C -0.091 4.091 11 H 0.100 0.900 12 C 0.100 3.900 13 N -0.617 5.617 14 C 0.551 3.449 15 O -0.564 6.564 16 C -0.121 4.121 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.910 5.910 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.258 1.258 26 C 0.110 3.890 27 C -0.094 4.094 28 H 0.101 0.899 29 C 0.047 3.953 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.417 0.583 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 -22.798 19.673 35.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.297 3.703 4 O -0.445 6.445 5 C -0.059 4.059 6 H 0.104 0.896 7 C -0.196 4.196 8 N -0.229 5.229 9 C -0.079 4.079 10 C -0.111 4.111 11 H 0.119 0.881 12 C -0.023 4.023 13 N -0.351 5.351 14 C 0.339 3.661 15 O -0.443 6.443 16 C -0.272 4.272 17 S 0.080 5.920 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.182 1.182 26 C -0.013 4.013 27 C -0.114 4.114 28 H 0.119 0.881 29 C -0.080 4.080 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.887 -21.707 20.316 34.192 hybrid contribution -1.040 0.040 -1.838 2.112 sum -17.928 -21.667 18.477 33.649 Atomic orbital electron populations 1.21618 0.79014 1.04062 1.01166 1.45736 1.08203 1.08654 1.75200 1.20888 0.90479 0.83744 0.75206 1.90691 1.70969 1.32809 1.50017 1.21892 0.91028 0.91049 1.01964 0.89631 1.21825 1.02843 1.00169 0.94714 1.65269 1.09119 1.12996 1.35487 1.23142 0.99603 0.94428 0.90686 1.23069 0.95028 0.99887 0.93094 0.88148 1.22881 0.78394 1.03347 0.97687 1.48460 1.08494 1.51430 1.26690 1.19729 0.85558 0.77836 0.82965 1.90689 1.16682 1.62421 1.74486 1.23311 1.03460 1.02734 0.97733 1.85552 1.11658 1.65352 1.29485 1.23182 0.95856 1.38086 1.12302 0.89998 1.26146 0.96266 0.96138 1.00620 1.70183 1.09442 1.39565 1.35466 0.84937 0.78029 0.78513 0.76398 1.19286 1.20150 1.18219 1.22281 0.98313 0.96380 0.84307 1.22653 0.93084 0.98468 0.97181 0.88103 1.23285 0.87201 0.94861 1.02683 0.93571 0.87212 0.93427 0.74593 0.89243 0.90019 0.92443 0.93067 0.90025 0.89963 0.89661 0.87613 0.87676 0.91930 0.91462 0.90085 0.87981 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 127.77 1.37 2.04 16 2 N -0.72 -6.08 5.61 -484.52 -2.72 -8.79 16 3 C 0.51 7.94 6.92 87.66 0.61 8.54 16 4 O -0.57 -14.25 14.42 -3.04 -0.04 -14.30 16 5 C 0.05 0.59 2.25 44.17 0.10 0.69 16 6 H 0.09 0.69 7.97 -2.39 -0.02 0.67 16 7 C -0.14 -0.85 8.94 71.98 0.64 -0.21 16 8 N -0.50 -7.87 4.94 -861.17 -4.26 -12.13 16 9 C 0.05 0.87 5.22 86.43 0.45 1.32 16 10 C -0.09 -1.66 4.22 -8.53 -0.04 -1.69 16 11 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 12 C 0.10 2.12 6.44 87.36 0.56 2.68 16 13 N -0.62 -17.68 3.32 -810.34 -2.69 -20.37 16 14 C 0.55 21.87 7.90 87.66 0.69 22.57 16 15 O -0.56 -27.45 16.09 -3.05 -0.05 -27.50 16 16 C -0.12 -5.09 5.13 71.23 0.37 -4.72 16 17 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 18 C -0.55 -31.71 9.50 67.96 0.65 -31.07 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 22 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 C 0.11 2.47 6.55 86.50 0.57 3.03 16 27 C -0.09 -1.60 4.02 -9.39 -0.04 -1.63 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 29 C 0.05 0.59 4.88 86.44 0.42 1.01 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.42 0.56 8.25 -92.71 -0.76 -0.20 16 34 H 0.09 0.10 7.56 -2.39 -0.02 0.08 16 35 H 0.08 0.37 6.93 -2.39 -0.02 0.35 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.82 6.95 -2.39 -0.02 0.80 16 38 H 0.08 1.82 6.56 -2.39 -0.02 1.80 16 39 H 0.08 1.76 7.31 -2.39 -0.02 1.74 16 40 H 0.09 1.58 7.19 -2.39 -0.02 1.57 16 41 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 42 H 0.11 4.05 7.86 -2.40 -0.02 4.03 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.07 1.74 7.92 -2.38 -0.02 1.72 16 45 H 0.08 1.58 7.11 -2.39 -0.02 1.57 16 46 H 0.10 1.02 7.66 -2.39 -0.02 1.00 16 47 H 0.06 0.66 7.00 -2.39 -0.02 0.64 16 Total: -1.00 -84.90 386.60 -1.57 -86.47 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.22 Total: 12.43 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.82 Total: 3.78 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -9.38 Total: -97.42 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.09 Total: -41.80 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -84.90 -1.57 -86.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.638 kcal (2) G-P(sol) polarization free energy of solvation -84.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds