Wall clock time and date at job start Wed Apr 1 2020 00:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00016 * 2 1 4 4 O 1.21278 * 120.00300 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47385 * 300.00731 * 5 3 2 7 7 C 1.53008 * 109.46966 * 60.00287 * 5 3 2 8 8 N 1.46900 * 109.47323 * 180.02562 * 5 3 2 9 9 C 1.48561 * 110.99677 * 175.00328 * 8 5 3 10 10 C 1.54588 * 103.18149 * 200.04386 * 9 8 5 11 11 H 1.09000 * 112.63347 * 275.61470 * 10 9 8 12 12 C 1.53259 * 109.83106 * 149.27139 * 10 9 8 13 13 N 1.46577 * 108.19088 * 264.41229 * 12 10 9 14 14 C 1.34772 * 125.31068 * 181.97131 * 13 12 10 15 15 O 1.21281 * 119.99720 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00401 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47415 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99931 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00293 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99843 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99846 * 359.71985 * 20 18 17 22 22 Si 1.86795 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 59.99666 * 22 20 18 24 24 H 1.48505 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47124 * 299.99689 * 22 20 18 26 26 C 1.46611 * 109.38714 * 2.24386 * 13 12 10 27 27 C 1.54264 * 106.99445 * 341.77111 * 26 13 12 28 28 H 1.09005 * 113.68271 * 263.28072 * 27 26 13 29 29 C 1.47834 * 110.99607 * 57.55349 * 8 5 3 30 30 H 1.08997 * 109.46552 * 299.99521 * 1 2 3 31 31 H 1.09004 * 109.46939 * 59.99466 * 1 2 3 32 32 H 1.08997 * 109.46854 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00251 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47085 * 179.97438 * 7 5 3 35 35 H 1.09000 * 109.47078 * 300.00347 * 7 5 3 36 36 H 1.09003 * 109.46705 * 60.00028 * 7 5 3 37 37 H 1.08996 * 110.67769 * 81.62079 * 9 8 5 38 38 H 1.09000 * 110.82015 * 318.52894 * 9 8 5 39 39 H 1.09008 * 109.73358 * 144.72246 * 12 10 9 40 40 H 1.09002 * 109.71291 * 24.09836 * 12 10 9 41 41 H 1.09002 * 109.47362 * 59.99907 * 16 14 13 42 42 H 1.09005 * 109.46865 * 300.00021 * 16 14 13 43 43 H 0.97000 * 120.00210 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.91899 * 101.24889 * 26 13 12 45 45 H 1.09007 * 109.90768 * 222.53101 * 26 13 12 46 46 H 1.08996 * 109.88699 * 264.91254 * 29 8 5 47 47 H 1.08999 * 109.88985 * 25.93220 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0090 0.6535 0.8908 7 6 4.1564 0.4458 -1.2484 8 7 4.1356 2.5522 0.0011 9 6 5.6156 2.5935 0.1225 10 6 5.8885 4.0310 0.6213 11 1 5.9347 4.7555 -0.1917 12 6 7.1464 4.0476 1.4967 13 7 6.7299 3.9444 2.8983 14 6 7.5588 3.9652 3.9608 15 8 8.7549 4.0772 3.7946 16 6 6.9994 3.8493 5.3552 17 16 8.3532 3.9084 6.5553 18 6 7.4399 3.7576 8.0545 19 1 6.3642 3.6667 8.0247 20 6 8.1029 3.7567 9.2739 21 7 9.4145 3.8629 9.3100 22 14 7.1348 3.5961 10.8633 23 1 6.3876 2.3128 10.8603 24 1 8.0696 3.6213 12.0170 25 1 6.1778 4.7258 10.9763 26 6 5.2716 3.8084 2.9639 27 6 4.7128 4.2845 1.6071 28 1 4.3754 5.3210 1.6120 29 6 3.6135 3.2982 1.1658 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9501 -0.8400 -0.0004 34 1 5.2464 0.4462 -1.2482 35 1 3.7930 -0.5819 -1.2484 36 1 3.7933 0.9595 -2.1386 37 1 6.0861 2.4267 -0.8465 38 1 5.9653 1.8610 0.8499 39 1 7.6900 4.9797 1.3421 40 1 7.7847 3.2024 1.2392 41 1 6.4665 2.9038 5.4556 42 1 6.3125 4.6751 5.5409 43 1 9.8779 3.8619 10.1622 44 1 5.0032 2.7656 3.1334 45 1 4.8765 4.4314 3.7663 46 1 2.7153 3.8468 0.8824 47 1 3.3851 2.6068 1.9769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699985743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:26 Heat of formation + Delta-G solvation = -52.085652 kcal Electronic energy + Delta-G solvation = -27698.753294 eV Core-core repulsion = 23815.026298 eV Total energy + Delta-G solvation = -3883.726997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11222 -39.93286 -38.41256 -36.04852 -35.03011 -33.09726 -32.43345 -31.28378 -29.98457 -28.79281 -27.41349 -26.32184 -25.49734 -24.81012 -22.99285 -21.64795 -20.51990 -20.12364 -19.35508 -17.72284 -17.60076 -17.06980 -16.68020 -16.12314 -15.90067 -15.30826 -15.08160 -14.97626 -14.80750 -14.68296 -14.33612 -13.84764 -13.65220 -13.37579 -13.04151 -12.99685 -12.89189 -12.80468 -12.69584 -12.54373 -12.44217 -12.37643 -11.90577 -11.70787 -11.55844 -11.23894 -11.06464 -11.04582 -11.04103 -10.91138 -10.76657 -10.02913 -9.83096 -9.56027 -9.42249 -9.06466 -8.75662 -8.47822 -8.24651 -6.51121 -6.22000 -3.92904 2.26514 2.66905 2.92435 3.04775 3.22955 3.25630 3.28833 3.54435 3.62532 4.00687 4.19886 4.20866 4.31074 4.40077 4.58003 4.66707 4.79520 4.88365 4.93689 5.00982 5.05020 5.08115 5.12006 5.12920 5.21239 5.25693 5.35931 5.38362 5.45754 5.50395 5.55119 5.61800 5.67933 5.73184 5.83231 5.84994 5.92770 5.96282 6.06072 6.12601 6.45112 6.50702 6.53158 7.03917 7.58558 7.65737 7.84199 8.34484 8.54740 9.22973 10.85377 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002397 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.501121 B =11677.292446 C =13005.356135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.517 3.483 4 O -0.519 6.519 5 C 0.053 3.947 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.495 5.495 9 C 0.040 3.960 10 C -0.095 4.095 11 H 0.108 0.892 12 C 0.116 3.884 13 N -0.622 5.622 14 C 0.547 3.453 15 O -0.514 6.514 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.106 3.894 27 C -0.107 4.107 28 H 0.105 0.895 29 C 0.050 3.950 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.371 -8.445 -23.144 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.391 5.391 3 C 0.302 3.698 4 O -0.394 6.394 5 C -0.059 4.059 6 H 0.087 0.913 7 C -0.198 4.198 8 N -0.219 5.219 9 C -0.087 4.087 10 C -0.114 4.114 11 H 0.126 0.874 12 C -0.008 4.008 13 N -0.359 5.359 14 C 0.336 3.664 15 O -0.388 6.388 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.017 4.017 27 C -0.127 4.127 28 H 0.123 0.877 29 C -0.077 4.077 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.010 -7.283 -23.684 28.970 hybrid contribution -1.666 -1.183 2.040 2.888 sum -16.676 -8.466 -21.644 28.605 Atomic orbital electron populations 1.21531 0.79361 1.02243 1.02430 1.45796 1.07864 1.08690 1.76741 1.20492 0.89685 0.83728 0.75849 1.90705 1.70034 1.30926 1.47687 1.21834 0.91954 0.91855 1.00239 0.91285 1.21779 1.02248 0.99162 0.96614 1.64727 1.06000 1.09889 1.41308 1.23365 0.87911 0.96190 1.01239 1.22751 0.93685 0.97388 0.97621 0.87399 1.21560 0.96002 1.02398 0.80815 1.48229 1.06939 1.75020 1.05754 1.20025 0.85882 0.75411 0.85088 1.90710 1.14731 1.47820 1.85575 1.23511 1.06217 1.04662 0.95331 1.85392 1.06052 1.95900 0.95983 1.22815 0.95248 1.58464 0.91856 0.91008 1.24994 0.95111 0.94553 0.98907 1.70009 1.06974 1.46570 1.26717 0.86221 0.79365 0.78832 0.81065 1.19957 1.20786 1.19916 1.22207 0.80848 1.00760 0.97920 1.23051 0.95081 1.00723 0.93807 0.87689 1.23004 0.98127 0.95697 0.90916 0.92164 0.92172 0.90646 0.76531 0.91081 0.91777 0.91023 0.89341 0.93001 0.91228 0.91415 0.89454 0.89274 0.92114 0.91957 0.90425 0.88272 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -4.32 5.61 -67.08 -0.38 -4.70 16 3 C 0.52 4.63 6.82 -10.99 -0.07 4.55 16 4 O -0.52 -6.60 14.16 5.56 0.08 -6.52 16 5 C 0.05 0.40 2.17 -68.86 -0.15 0.25 16 6 H 0.07 0.48 8.00 -51.93 -0.42 0.07 16 7 C -0.14 -0.75 9.06 37.16 0.34 -0.41 16 8 N -0.49 -4.52 4.92 -224.05 -1.10 -5.62 16 9 C 0.04 0.34 4.76 -2.07 -0.01 0.33 16 10 C -0.09 -0.87 4.02 -88.32 -0.36 -1.22 16 11 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 12 C 0.12 1.40 6.26 -3.87 -0.02 1.37 16 13 N -0.62 -9.20 3.31 -172.59 -0.57 -9.77 16 14 C 0.55 10.78 7.85 -10.99 -0.09 10.70 16 15 O -0.51 -12.11 16.17 5.56 0.09 -12.02 16 16 C -0.15 -3.07 5.19 36.00 0.19 -2.88 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.11 1.24 5.92 -3.32 -0.02 1.22 16 27 C -0.11 -1.03 4.19 -88.03 -0.37 -1.40 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 C 0.05 0.50 4.79 -2.71 -0.01 0.48 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.40 1.22 8.25 -40.82 -0.34 0.88 16 34 H 0.07 0.35 7.07 -51.93 -0.37 -0.01 16 35 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.62 7.68 -51.93 -0.40 0.23 16 38 H 0.05 0.47 7.69 -51.93 -0.40 0.07 16 39 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 40 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 42 H 0.09 1.74 7.88 -51.91 -0.41 1.33 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 0.70 7.19 -51.93 -0.37 0.33 16 45 H 0.08 0.90 7.62 -51.93 -0.40 0.50 16 46 H 0.10 1.13 6.89 -51.93 -0.36 0.78 16 47 H 0.04 0.45 6.67 -51.93 -0.35 0.11 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -37.00 387.05 -9.81 -46.81 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.52 Total: -2.10 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.26 Total: 1.03 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -1.32 Total: -45.62 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.00 -9.81 -46.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.277 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds