Wall clock time and date at job start Wed Apr 1 2020 00:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00016 * 2 1 4 4 O 1.21278 * 120.00300 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47385 * 300.00731 * 5 3 2 7 7 C 1.53008 * 109.46966 * 60.00287 * 5 3 2 8 8 N 1.46900 * 109.47323 * 180.02562 * 5 3 2 9 9 C 1.48561 * 110.99677 * 175.00328 * 8 5 3 10 10 C 1.54588 * 103.18149 * 200.04386 * 9 8 5 11 11 H 1.09000 * 112.63347 * 275.61470 * 10 9 8 12 12 C 1.53259 * 109.83106 * 149.27139 * 10 9 8 13 13 N 1.46577 * 108.19088 * 264.41229 * 12 10 9 14 14 C 1.34772 * 125.31068 * 181.97131 * 13 12 10 15 15 O 1.21281 * 119.99720 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00401 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47415 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99931 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00293 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99843 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99846 * 359.71985 * 20 18 17 22 22 Si 1.86795 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 59.99666 * 22 20 18 24 24 H 1.48505 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47124 * 299.99689 * 22 20 18 26 26 C 1.46611 * 109.38714 * 2.24386 * 13 12 10 27 27 C 1.54264 * 106.99445 * 341.77111 * 26 13 12 28 28 H 1.09005 * 113.68271 * 263.28072 * 27 26 13 29 29 C 1.47834 * 110.99607 * 57.55349 * 8 5 3 30 30 H 1.08997 * 109.46552 * 299.99521 * 1 2 3 31 31 H 1.09004 * 109.46939 * 59.99466 * 1 2 3 32 32 H 1.08997 * 109.46854 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00251 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47085 * 179.97438 * 7 5 3 35 35 H 1.09000 * 109.47078 * 300.00347 * 7 5 3 36 36 H 1.09003 * 109.46705 * 60.00028 * 7 5 3 37 37 H 1.08996 * 110.67769 * 81.62079 * 9 8 5 38 38 H 1.09000 * 110.82015 * 318.52894 * 9 8 5 39 39 H 1.09008 * 109.73358 * 144.72246 * 12 10 9 40 40 H 1.09002 * 109.71291 * 24.09836 * 12 10 9 41 41 H 1.09002 * 109.47362 * 59.99907 * 16 14 13 42 42 H 1.09005 * 109.46865 * 300.00021 * 16 14 13 43 43 H 0.97000 * 120.00210 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.91899 * 101.24889 * 26 13 12 45 45 H 1.09007 * 109.90768 * 222.53101 * 26 13 12 46 46 H 1.08996 * 109.88699 * 264.91254 * 29 8 5 47 47 H 1.08999 * 109.88985 * 25.93220 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0090 0.6535 0.8908 7 6 4.1564 0.4458 -1.2484 8 7 4.1356 2.5522 0.0011 9 6 5.6156 2.5935 0.1225 10 6 5.8885 4.0310 0.6213 11 1 5.9347 4.7555 -0.1917 12 6 7.1464 4.0476 1.4967 13 7 6.7299 3.9444 2.8983 14 6 7.5588 3.9652 3.9608 15 8 8.7549 4.0772 3.7946 16 6 6.9994 3.8493 5.3552 17 16 8.3532 3.9084 6.5553 18 6 7.4399 3.7576 8.0545 19 1 6.3642 3.6667 8.0247 20 6 8.1029 3.7567 9.2739 21 7 9.4145 3.8629 9.3100 22 14 7.1348 3.5961 10.8633 23 1 6.3876 2.3128 10.8603 24 1 8.0696 3.6213 12.0170 25 1 6.1778 4.7258 10.9763 26 6 5.2716 3.8084 2.9639 27 6 4.7128 4.2845 1.6071 28 1 4.3754 5.3210 1.6120 29 6 3.6135 3.2982 1.1658 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9501 -0.8400 -0.0004 34 1 5.2464 0.4462 -1.2482 35 1 3.7930 -0.5819 -1.2484 36 1 3.7933 0.9595 -2.1386 37 1 6.0861 2.4267 -0.8465 38 1 5.9653 1.8610 0.8499 39 1 7.6900 4.9797 1.3421 40 1 7.7847 3.2024 1.2392 41 1 6.4665 2.9038 5.4556 42 1 6.3125 4.6751 5.5409 43 1 9.8779 3.8619 10.1622 44 1 5.0032 2.7656 3.1334 45 1 4.8765 4.4314 3.7663 46 1 2.7153 3.8468 0.8824 47 1 3.3851 2.6068 1.9769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699985743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:25 Heat of formation + Delta-G solvation = -80.605542 kcal Electronic energy + Delta-G solvation = -27699.990010 eV Core-core repulsion = 23815.026298 eV Total energy + Delta-G solvation = -3884.963712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97219 -40.84520 -39.62721 -37.03810 -35.65357 -34.60655 -33.99732 -32.27665 -31.00610 -29.98881 -27.97289 -27.70702 -27.10069 -25.66977 -23.83735 -22.38706 -21.20964 -20.97168 -20.69351 -19.59765 -18.30811 -18.20866 -17.50982 -17.19984 -16.90051 -16.74131 -16.52770 -16.24880 -15.74836 -15.62899 -15.40533 -15.17747 -14.66195 -14.57848 -14.17184 -13.95023 -13.74844 -13.66681 -13.50289 -13.42882 -13.27762 -13.17198 -13.09376 -13.05328 -12.88231 -12.65417 -12.36634 -12.29770 -12.05586 -11.88505 -11.73737 -11.69026 -11.14754 -11.01946 -10.71746 -10.32228 -10.12413 -9.78067 -9.40485 -8.70698 -8.36367 -6.15545 1.21118 1.42703 1.42941 1.49940 1.53566 1.61479 2.04337 2.15453 2.25406 2.88988 2.97526 3.11940 3.31642 3.43308 3.58223 3.74950 3.85601 4.02612 4.04753 4.10966 4.15699 4.19458 4.27763 4.38500 4.41637 4.46493 4.56151 4.59083 4.62430 4.63828 4.73273 4.76677 4.85994 4.89425 4.95422 5.01833 5.11349 5.19263 5.28450 5.34297 5.39239 5.46008 5.80081 5.88748 6.17515 6.30537 6.55550 7.04315 7.05464 7.26537 8.72693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002397 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.501121 B =11677.292446 C =13005.356135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.511 3.489 4 O -0.564 6.564 5 C 0.052 3.948 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.504 5.504 9 C 0.046 3.954 10 C -0.084 4.084 11 H 0.126 0.874 12 C 0.112 3.888 13 N -0.611 5.611 14 C 0.546 3.454 15 O -0.563 6.563 16 C -0.121 4.121 17 S -0.147 6.147 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.100 3.900 27 C -0.099 4.099 28 H 0.114 0.886 29 C 0.059 3.941 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.417 0.583 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.509 -9.783 -23.908 31.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.297 3.703 4 O -0.442 6.442 5 C -0.060 4.060 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.229 5.229 9 C -0.082 4.082 10 C -0.103 4.103 11 H 0.144 0.856 12 C -0.011 4.011 13 N -0.346 5.346 14 C 0.335 3.665 15 O -0.441 6.441 16 C -0.272 4.272 17 S 0.080 5.920 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.022 4.022 27 C -0.119 4.119 28 H 0.132 0.868 29 C -0.069 4.069 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.195 -8.670 -24.497 31.160 hybrid contribution -1.089 -0.812 2.133 2.529 sum -18.284 -9.483 -22.364 30.404 Atomic orbital electron populations 1.21628 0.78858 1.04081 1.01265 1.45750 1.08308 1.08644 1.75129 1.20827 0.90355 0.83826 0.75260 1.90688 1.70922 1.32572 1.50066 1.21931 0.91069 0.91240 1.01712 0.90411 1.21785 1.02628 1.00021 0.94856 1.64714 1.06296 1.11034 1.40833 1.23361 0.87541 0.95262 1.02003 1.22744 0.91602 0.98662 0.97289 0.85596 1.21760 0.97583 1.02232 0.79482 1.48146 1.07981 1.72592 1.05846 1.19739 0.85570 0.75610 0.85611 1.90690 1.16690 1.50564 1.86174 1.23311 1.03470 1.06128 0.94280 1.85558 1.11222 1.96241 0.98963 1.23146 0.95659 1.58567 0.92170 0.90022 1.26140 0.96188 0.93718 1.03039 1.70175 1.09035 1.47621 1.27831 0.84996 0.77801 0.79491 0.75664 1.18601 1.20261 1.18690 1.22459 0.78719 1.01578 0.99469 1.23019 0.95080 1.01202 0.92553 0.86751 1.22831 0.97419 0.95544 0.91078 0.93542 0.93174 0.87294 0.74680 0.90386 0.89437 0.92053 0.87604 0.93500 0.91710 0.91324 0.87791 0.87693 0.91909 0.91068 0.90055 0.89937 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.70 127.77 1.37 2.12 16 2 N -0.73 -7.10 5.61 -484.52 -2.72 -9.81 16 3 C 0.51 8.49 6.82 87.66 0.60 9.09 16 4 O -0.56 -14.21 14.16 -3.02 -0.04 -14.26 16 5 C 0.05 0.68 2.17 44.17 0.10 0.78 16 6 H 0.08 0.90 8.00 -2.39 -0.02 0.88 16 7 C -0.14 -1.08 9.06 71.98 0.65 -0.43 16 8 N -0.50 -8.26 4.92 -862.75 -4.25 -12.50 16 9 C 0.05 0.65 4.76 86.52 0.41 1.06 16 10 C -0.08 -1.34 4.02 -9.30 -0.04 -1.38 16 11 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 12 C 0.11 2.56 6.26 86.45 0.54 3.10 16 13 N -0.61 -17.41 3.31 -818.35 -2.71 -20.12 16 14 C 0.55 21.54 7.85 87.66 0.69 22.23 16 15 O -0.56 -27.20 16.17 -3.03 -0.05 -27.25 16 16 C -0.12 -5.03 5.19 71.23 0.37 -4.66 16 17 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 18 C -0.55 -31.59 9.50 67.96 0.65 -30.95 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 C 0.10 2.15 5.92 86.79 0.51 2.67 16 27 C -0.10 -1.71 4.19 -9.12 -0.04 -1.75 16 28 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 29 C 0.06 1.09 4.79 86.51 0.41 1.50 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.42 1.36 8.25 -92.71 -0.76 0.59 16 34 H 0.08 0.54 7.07 -2.39 -0.02 0.52 16 35 H 0.09 0.28 7.56 -2.39 -0.02 0.26 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 1.17 7.68 -2.39 -0.02 1.15 16 38 H 0.05 0.73 7.69 -2.39 -0.02 0.71 16 39 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 1.59 7.75 -2.39 -0.02 1.57 16 41 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.10 4.01 7.88 -2.39 -0.02 3.99 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.07 1.46 7.19 -2.39 -0.02 1.44 16 45 H 0.08 1.73 7.62 -2.38 -0.02 1.71 16 46 H 0.08 1.85 6.89 -2.39 -0.02 1.83 16 47 H 0.04 0.77 6.67 -2.39 -0.02 0.75 16 Total: -1.00 -83.25 387.05 -1.71 -84.96 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.21 Total: 13.98 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.69 Total: 4.65 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -9.38 Total: -98.33 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.09 Total: -41.51 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -83.25 -1.71 -84.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.355 kcal (2) G-P(sol) polarization free energy of solvation -83.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds