Wall clock time and date at job start Wed Apr 1 2020 01:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 110.99571 * 2 1 4 4 C 1.53044 * 109.52329 * 185.83971 * 3 2 1 5 5 C 1.53130 * 109.27416 * 300.82129 * 4 3 2 6 6 C 1.50701 * 109.52171 * 177.56033 * 5 4 3 7 7 O 1.21287 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34767 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47145 * 60.00107 * 20 18 16 22 22 H 1.48496 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47229 * 300.00299 * 20 18 16 24 24 C 1.47067 * 87.88377 * 27.34414 * 11 10 9 25 25 C 1.53119 * 109.16032 * 57.65047 * 5 4 3 26 26 C 1.46850 * 110.99788 * 124.20427 * 2 1 3 27 27 H 1.09005 * 109.47152 * 60.00382 * 1 2 3 28 28 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47542 * 300.00011 * 1 2 3 30 30 H 1.08995 * 109.46947 * 65.82412 * 3 2 1 31 31 H 1.09002 * 109.45480 * 305.84449 * 3 2 1 32 32 H 1.08993 * 109.50834 * 180.87986 * 4 3 2 33 33 H 1.08994 * 109.53459 * 60.77385 * 4 3 2 34 34 H 1.08999 * 109.51960 * 297.68132 * 5 4 3 35 35 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 36 36 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 37 37 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 38 38 H 1.08996 * 113.46488 * 334.93033 * 10 9 8 39 39 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 40 40 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 41 41 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.47005 * 87.43764 * 24 11 10 43 43 H 1.09003 * 113.46723 * 217.87945 * 24 11 10 44 44 H 1.09001 * 109.50348 * 62.28749 * 25 5 4 45 45 H 1.09001 * 109.49684 * 182.40463 * 25 5 4 46 46 H 1.08997 * 109.46676 * 294.18257 * 26 2 1 47 47 H 1.09004 * 109.45864 * 54.14737 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0145 6 6 5.6133 0.4465 0.8433 7 8 6.1467 0.9675 -0.1133 8 7 6.3568 -0.2143 1.7525 9 6 7.8096 -0.3029 1.5858 10 6 8.4497 -1.5149 2.2768 11 7 9.5607 -0.6367 2.6734 12 6 10.8686 -0.7945 2.9578 13 8 11.3712 -1.8971 2.9079 14 6 11.7062 0.3989 3.3389 15 16 13.4060 -0.1345 3.6588 16 6 14.1403 1.4137 4.0691 17 1 13.5422 2.3129 4.0658 18 6 15.4862 1.4768 4.4026 19 7 16.2140 0.3801 4.4119 20 14 16.2649 3.1182 4.8369 21 1 15.5752 3.6963 6.0182 22 1 17.7020 2.9164 5.1520 23 1 16.1368 4.0471 3.6854 24 6 8.6148 0.4886 2.6296 25 6 3.5180 -0.8714 1.0209 26 6 1.9952 -0.7707 1.1339 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.7324 1.8609 0.9375 31 1 1.5633 1.9255 -0.8331 32 1 3.9098 2.3512 -0.1310 33 1 3.7819 0.8572 -1.0906 34 1 3.8896 1.0362 1.9560 35 1 5.9301 -0.6313 2.5174 36 1 8.1352 -0.1516 0.5567 37 1 8.7454 -2.3031 1.5844 38 1 7.8702 -1.8897 3.1204 39 1 11.2951 0.8594 4.2372 40 1 11.6994 1.1227 2.5239 41 1 17.1547 0.4242 4.6447 42 1 8.0788 0.6420 3.5662 43 1 9.0512 1.4074 2.2377 44 1 3.7813 -1.3836 0.0955 45 1 3.9098 -1.4301 1.8709 46 1 1.7324 -0.2708 2.0661 47 1 1.5633 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704531549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:05 Heat of formation + Delta-G solvation = -31.582189 kcal Electronic energy + Delta-G solvation = -26494.583883 eV Core-core repulsion = 22611.745983 eV Total energy + Delta-G solvation = -3882.837900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99903 -40.01858 -38.63482 -37.52620 -34.38891 -33.81993 -32.43893 -31.36984 -30.36293 -28.23601 -27.21364 -26.13407 -25.45489 -24.11026 -23.66222 -22.05463 -21.11167 -20.15073 -19.10379 -17.77019 -17.59418 -17.05711 -16.62767 -16.25706 -15.66652 -15.54696 -15.27153 -15.17626 -14.81223 -14.75226 -14.35193 -14.18063 -13.91650 -13.64025 -13.40737 -13.01841 -12.96670 -12.88934 -12.80876 -12.62626 -12.49016 -12.17728 -11.84900 -11.77464 -11.64417 -11.34917 -11.18947 -11.04716 -11.04091 -10.98358 -10.78026 -10.10364 -9.84692 -9.54565 -9.37633 -9.06811 -8.87157 -8.70979 -8.26664 -6.52207 -6.22310 -3.93645 2.24451 2.44613 2.85610 3.09157 3.23443 3.25558 3.28958 3.38260 3.54889 4.02811 4.09021 4.19325 4.21446 4.31443 4.49895 4.59584 4.66734 4.77784 4.82204 4.87425 4.88685 4.95353 4.98037 5.10237 5.12827 5.15299 5.16010 5.29400 5.32779 5.36844 5.40259 5.43063 5.51564 5.54222 5.64960 5.65849 5.85713 5.89629 5.91198 6.11918 6.12720 6.50696 6.53731 7.06870 7.58583 7.76006 7.84606 8.34248 8.46531 9.22743 10.85078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028738 B = 0.001665 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.090487 B =16807.738021 C =17476.042464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.098 4.098 5 C -0.108 4.108 6 C 0.522 3.478 7 O -0.531 6.531 8 N -0.718 5.718 9 C 0.109 3.891 10 C 0.098 3.902 11 N -0.649 5.649 12 C 0.567 3.433 13 O -0.511 6.511 14 C -0.145 4.145 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.087 3.913 25 C -0.108 4.108 26 C 0.056 3.944 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.269 0.731 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.385 0.098 -5.524 34.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.130 4.130 6 C 0.308 3.692 7 O -0.406 6.406 8 N -0.370 5.370 9 C 0.003 3.997 10 C -0.027 4.027 11 N -0.389 5.389 12 C 0.356 3.644 13 O -0.384 6.384 14 C -0.295 4.295 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.038 4.038 25 C -0.147 4.147 26 C -0.072 4.072 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.238 0.762 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -32.632 -1.509 -6.646 33.336 hybrid contribution -0.591 2.553 1.686 3.116 sum -33.223 1.045 -4.960 33.607 Atomic orbital electron populations 1.22358 0.87027 1.02201 1.00759 1.61925 1.07748 1.13995 1.43320 1.22143 0.95406 0.88964 1.00777 1.21424 0.93240 1.00616 0.98288 1.21423 0.91118 0.98726 1.01701 1.20658 0.89177 0.77373 0.81947 1.90742 1.73855 1.45535 1.30449 1.45845 1.06936 1.56550 1.27624 1.22930 0.79098 0.96609 1.01046 1.23198 0.86203 0.95051 0.98230 1.49342 1.06592 1.11719 1.71237 1.19931 0.78688 0.90663 0.75079 1.90725 1.70144 1.26903 1.50594 1.23478 1.03327 0.98515 1.04191 1.85394 0.94987 1.13509 1.89344 1.22818 0.97578 0.93945 1.54152 0.90934 1.24986 0.96044 0.97669 0.94789 1.70004 1.07789 1.27261 1.45200 0.86215 0.78058 0.82204 0.78976 1.19945 1.20768 1.19898 1.23510 0.88802 0.92805 0.98702 1.21602 0.94775 0.94800 1.03474 1.22085 0.94868 0.98655 0.91550 0.91215 0.91274 0.95657 0.94766 0.90240 0.90552 0.90002 0.88640 0.76237 0.84935 0.89636 0.89848 0.89255 0.89120 0.92090 0.89664 0.89658 0.90161 0.90780 0.94607 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.59 60.06 0.58 0.68 16 2 N -0.55 -3.16 4.91 -242.96 -1.19 -4.35 16 3 C 0.05 0.31 5.46 -3.83 -0.02 0.28 16 4 C -0.10 -0.66 4.68 -26.64 -0.12 -0.78 16 5 C -0.11 -0.62 2.59 -91.64 -0.24 -0.85 16 6 C 0.52 4.37 7.16 -10.99 -0.08 4.29 16 7 O -0.53 -6.78 15.57 5.55 0.09 -6.69 16 8 N -0.72 -4.65 5.30 -53.48 -0.28 -4.93 16 9 C 0.11 0.98 4.62 -67.67 -0.31 0.67 16 10 C 0.10 0.99 8.38 -8.51 -0.07 0.92 16 11 N -0.65 -9.20 3.69 -185.08 -0.68 -9.88 16 12 C 0.57 11.09 8.10 -10.99 -0.09 11.00 16 13 O -0.51 -12.01 16.64 5.56 0.09 -11.92 16 14 C -0.14 -3.02 5.98 36.00 0.22 -2.81 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.09 0.88 8.25 -8.37 -0.07 0.81 16 25 C -0.11 -0.49 5.26 -26.65 -0.14 -0.63 16 26 C 0.06 0.26 5.46 -3.83 -0.02 0.24 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.02 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.40 1.43 8.24 -40.82 -0.34 1.10 16 36 H 0.13 1.45 7.45 -51.93 -0.39 1.06 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 40 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.20 7.66 -51.93 -0.40 -0.20 16 46 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -37.08 398.94 -10.49 -47.56 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.84 Total: -3.66 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.18 Total: 0.73 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -1.43 Total: -44.69 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.08 -10.49 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704531549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.982 kcal (2) G-P(sol) polarization free energy of solvation -37.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds