Wall clock time and date at job start Wed Apr 1 2020 01:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 110.99571 * 2 1 4 4 C 1.53044 * 109.52329 * 185.83971 * 3 2 1 5 5 C 1.53130 * 109.27416 * 300.82129 * 4 3 2 6 6 C 1.50701 * 109.52171 * 177.56033 * 5 4 3 7 7 O 1.21287 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34767 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47145 * 60.00107 * 20 18 16 22 22 H 1.48496 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47229 * 300.00299 * 20 18 16 24 24 C 1.47067 * 87.88377 * 27.34414 * 11 10 9 25 25 C 1.53119 * 109.16032 * 57.65047 * 5 4 3 26 26 C 1.46850 * 110.99788 * 124.20427 * 2 1 3 27 27 H 1.09005 * 109.47152 * 60.00382 * 1 2 3 28 28 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47542 * 300.00011 * 1 2 3 30 30 H 1.08995 * 109.46947 * 65.82412 * 3 2 1 31 31 H 1.09002 * 109.45480 * 305.84449 * 3 2 1 32 32 H 1.08993 * 109.50834 * 180.87986 * 4 3 2 33 33 H 1.08994 * 109.53459 * 60.77385 * 4 3 2 34 34 H 1.08999 * 109.51960 * 297.68132 * 5 4 3 35 35 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 36 36 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 37 37 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 38 38 H 1.08996 * 113.46488 * 334.93033 * 10 9 8 39 39 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 40 40 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 41 41 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.47005 * 87.43764 * 24 11 10 43 43 H 1.09003 * 113.46723 * 217.87945 * 24 11 10 44 44 H 1.09001 * 109.50348 * 62.28749 * 25 5 4 45 45 H 1.09001 * 109.49684 * 182.40463 * 25 5 4 46 46 H 1.08997 * 109.46676 * 294.18257 * 26 2 1 47 47 H 1.09004 * 109.45864 * 54.14737 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0145 6 6 5.6133 0.4465 0.8433 7 8 6.1467 0.9675 -0.1133 8 7 6.3568 -0.2143 1.7525 9 6 7.8096 -0.3029 1.5858 10 6 8.4497 -1.5149 2.2768 11 7 9.5607 -0.6367 2.6734 12 6 10.8686 -0.7945 2.9578 13 8 11.3712 -1.8971 2.9079 14 6 11.7062 0.3989 3.3389 15 16 13.4060 -0.1345 3.6588 16 6 14.1403 1.4137 4.0691 17 1 13.5422 2.3129 4.0658 18 6 15.4862 1.4768 4.4026 19 7 16.2140 0.3801 4.4119 20 14 16.2649 3.1182 4.8369 21 1 15.5752 3.6963 6.0182 22 1 17.7020 2.9164 5.1520 23 1 16.1368 4.0471 3.6854 24 6 8.6148 0.4886 2.6296 25 6 3.5180 -0.8714 1.0209 26 6 1.9952 -0.7707 1.1339 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.7324 1.8609 0.9375 31 1 1.5633 1.9255 -0.8331 32 1 3.9098 2.3512 -0.1310 33 1 3.7819 0.8572 -1.0906 34 1 3.8896 1.0362 1.9560 35 1 5.9301 -0.6313 2.5174 36 1 8.1352 -0.1516 0.5567 37 1 8.7454 -2.3031 1.5844 38 1 7.8702 -1.8897 3.1204 39 1 11.2951 0.8594 4.2372 40 1 11.6994 1.1227 2.5239 41 1 17.1547 0.4242 4.6447 42 1 8.0788 0.6420 3.5662 43 1 9.0512 1.4074 2.2377 44 1 3.7813 -1.3836 0.0955 45 1 3.9098 -1.4301 1.8709 46 1 1.7324 -0.2708 2.0661 47 1 1.5633 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704531549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:05 Heat of formation + Delta-G solvation = -59.983061 kcal Electronic energy + Delta-G solvation = -26495.815437 eV Core-core repulsion = 22611.745983 eV Total energy + Delta-G solvation = -3884.069454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85184 -40.86693 -39.38810 -38.70962 -35.12848 -34.60919 -34.38120 -31.94037 -31.66515 -29.25210 -27.92423 -27.63118 -26.98455 -24.66545 -24.07648 -22.89328 -21.75488 -20.74061 -20.35869 -19.54512 -18.29549 -18.08616 -17.79927 -16.98313 -16.88759 -16.70458 -16.31727 -16.01194 -15.94924 -15.69676 -15.51248 -15.13549 -14.87330 -14.52563 -14.34711 -14.07425 -14.01572 -13.81158 -13.60662 -13.35866 -13.27887 -13.19655 -13.15801 -12.88053 -12.64536 -12.53388 -12.24449 -12.21420 -12.11003 -11.77866 -11.64649 -11.39420 -11.14946 -11.14492 -10.72388 -10.33667 -10.15482 -9.86557 -9.23038 -8.71073 -8.36490 -6.15968 1.14024 1.39555 1.42985 1.46994 1.52095 1.57669 1.78934 2.25114 2.30690 2.97577 3.03441 3.12093 3.27522 3.54804 3.59832 3.78186 3.84411 3.87795 4.02208 4.19820 4.21373 4.28830 4.38577 4.39623 4.41645 4.51054 4.51355 4.57403 4.58691 4.61685 4.76320 4.77826 4.80028 4.88789 4.94378 4.98550 5.07610 5.13393 5.22189 5.35845 5.39223 5.44316 6.15346 6.17402 6.18820 6.44476 6.56076 7.01752 7.04346 7.23667 8.72583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028738 B = 0.001665 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.090487 B =16807.738021 C =17476.042464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.060 3.940 4 C -0.097 4.097 5 C -0.099 4.099 6 C 0.522 3.478 7 O -0.579 6.579 8 N -0.698 5.698 9 C 0.126 3.874 10 C 0.099 3.901 11 N -0.650 5.650 12 C 0.565 3.435 13 O -0.563 6.563 14 C -0.120 4.120 15 S -0.147 6.147 16 C -0.550 4.550 17 H 0.082 0.918 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.263 1.263 24 C 0.086 3.914 25 C -0.104 4.104 26 C 0.056 3.944 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.422 0.578 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.047 0.953 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.069 1.504 -4.052 37.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.121 4.121 6 C 0.310 3.690 7 O -0.458 6.458 8 N -0.351 5.351 9 C 0.018 3.982 10 C -0.024 4.024 11 N -0.387 5.387 12 C 0.355 3.645 13 O -0.442 6.442 14 C -0.271 4.271 15 S 0.080 5.920 16 C -0.698 4.698 17 H 0.100 0.900 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.037 4.037 25 C -0.142 4.142 26 C -0.072 4.072 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.261 0.739 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.065 0.935 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -35.414 -0.101 -5.157 35.787 hybrid contribution 0.048 2.093 1.149 2.388 sum -35.366 1.992 -4.008 35.648 Atomic orbital electron populations 1.22367 0.86243 1.02639 1.00998 1.61924 1.08624 1.14081 1.44367 1.22067 0.94253 0.89230 1.01241 1.21362 0.94394 1.00052 0.97683 1.21419 0.88775 0.99653 1.02215 1.21160 0.90260 0.76394 0.81152 1.90735 1.74861 1.47699 1.32520 1.45611 1.05565 1.55959 1.27943 1.22452 0.80499 0.95604 0.99612 1.23502 0.84653 0.94824 0.99428 1.49190 1.05793 1.14901 1.68828 1.19533 0.80390 0.89249 0.75376 1.90699 1.71769 1.28258 1.53426 1.23269 0.98935 0.99418 1.05450 1.85552 1.01048 1.15557 1.89838 1.23162 0.98305 0.94027 1.54272 0.89970 1.26128 0.96545 1.02009 0.94273 1.70170 1.08199 1.30020 1.46240 0.84996 0.77008 0.76727 0.79216 1.18525 1.20213 1.18785 1.23848 0.87710 0.91635 1.00537 1.21607 0.95039 0.93905 1.03648 1.22134 0.94538 0.98975 0.91547 0.91320 0.90751 0.95085 0.93727 0.90422 0.91393 0.92642 0.86052 0.73890 0.87053 0.90473 0.86196 0.87393 0.87891 0.91890 0.86278 0.89864 0.92116 0.88132 0.93452 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.59 127.69 1.22 1.40 16 2 N -0.56 -5.62 4.91 -922.58 -4.53 -10.15 16 3 C 0.06 0.58 5.46 86.33 0.47 1.06 16 4 C -0.10 -1.24 4.68 30.65 0.14 -1.10 16 5 C -0.10 -0.90 2.59 -11.46 -0.03 -0.93 16 6 C 0.52 7.79 7.16 87.66 0.63 8.42 16 7 O -0.58 -14.67 15.57 -3.05 -0.05 -14.72 16 8 N -0.70 -6.85 5.30 -441.51 -2.34 -9.19 16 9 C 0.13 1.98 4.62 45.55 0.21 2.19 16 10 C 0.10 1.76 8.38 83.18 0.70 2.46 16 11 N -0.65 -17.32 3.69 -857.85 -3.16 -20.48 16 12 C 0.57 22.06 8.10 87.66 0.71 22.77 16 13 O -0.56 -27.23 16.64 -3.02 -0.05 -27.28 16 14 C -0.12 -4.97 5.98 71.24 0.43 -4.55 16 15 S -0.15 -8.34 20.57 -56.49 -1.16 -9.51 16 16 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.02 0.89 5.49 84.86 0.47 1.35 16 19 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 20 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 C 0.09 1.50 8.25 83.26 0.69 2.18 16 25 C -0.10 -0.67 5.26 30.65 0.16 -0.51 16 26 C 0.06 0.35 5.46 86.32 0.47 0.83 16 27 H 0.07 0.47 8.14 -2.38 -0.02 0.46 16 28 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 29 H 0.03 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 1.02 8.24 -92.71 -0.76 0.26 16 36 H 0.11 2.36 7.45 -2.39 -0.02 2.35 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 39 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 40 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.12 7.66 -2.39 -0.02 0.10 16 46 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.09 0.45 8.09 -2.39 -0.02 0.43 16 Total: -1.00 -85.20 398.94 -1.87 -87.07 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.20 Total: 10.00 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.91 Total: 4.36 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -9.75 Total: -95.78 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.10 Total: -42.00 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.51 kcal Total: -85.20 -1.87 -87.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704531549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.084 kcal (2) G-P(sol) polarization free energy of solvation -85.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds