Wall clock time and date at job start Wed Apr 1 2020 01:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46848 * 111.00005 * 2 1 4 4 C 1.53045 * 109.52187 * 174.15971 * 3 2 1 5 5 C 1.53111 * 109.27687 * 59.18044 * 4 3 2 6 6 C 1.53117 * 109.16532 * 302.34372 * 5 4 3 7 7 C 1.46843 * 111.00200 * 235.79148 * 2 1 3 8 8 H 1.08999 * 109.46284 * 65.83076 * 7 2 1 9 9 C 1.50700 * 109.46178 * 305.85423 * 7 2 1 10 10 O 1.21280 * 120.00236 * 340.00045 * 9 7 2 11 11 N 1.34779 * 120.00053 * 159.99943 * 9 7 2 12 12 C 1.46501 * 120.00125 * 180.02562 * 11 9 7 13 13 C 1.53494 * 114.20544 * 204.99700 * 12 11 9 14 14 N 1.47065 * 87.98686 * 220.14297 * 13 12 11 15 15 C 1.34776 * 136.05938 * 207.08209 * 14 13 12 16 16 O 1.21278 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99821 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46970 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00052 * 179.97438 * 18 17 15 20 20 H 1.07990 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99752 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99984 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99474 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00081 * 23 21 19 27 27 C 1.47067 * 87.88362 * 27.34331 * 14 13 12 28 28 H 1.08993 * 109.46844 * 184.20736 * 1 2 3 29 29 H 1.09000 * 109.47130 * 304.21178 * 1 2 3 30 30 H 1.09002 * 109.47092 * 64.20728 * 1 2 3 31 31 H 1.08992 * 109.46402 * 294.17609 * 3 2 1 32 32 H 1.09000 * 109.46548 * 54.15904 * 3 2 1 33 33 H 1.09000 * 109.49664 * 179.11937 * 4 3 2 34 34 H 1.08996 * 109.50046 * 299.23720 * 4 3 2 35 35 H 1.09000 * 109.52459 * 62.25051 * 5 4 3 36 36 H 1.09005 * 109.52266 * 182.43412 * 5 4 3 37 37 H 1.08999 * 109.49918 * 297.71847 * 6 5 4 38 38 H 1.08997 * 109.50487 * 177.59795 * 6 5 4 39 39 H 0.97004 * 119.99933 * 359.97438 * 11 9 7 40 40 H 1.09004 * 113.28039 * 338.06462 * 12 11 9 41 41 H 1.09009 * 113.46427 * 105.36470 * 13 12 11 42 42 H 1.08994 * 113.52279 * 334.93767 * 13 12 11 43 43 H 1.08993 * 109.47027 * 60.00415 * 17 15 14 44 44 H 1.09001 * 109.47164 * 300.00041 * 17 15 14 45 45 H 0.97000 * 119.99520 * 359.97438 * 22 21 19 46 46 H 1.08997 * 113.46659 * 87.43570 * 27 14 13 47 47 H 1.09001 * 113.47017 * 217.87600 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0209 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3983 -2.1543 -1.1206 10 8 0.9165 -2.5973 -0.0995 11 7 1.3997 -2.8996 -2.2436 12 6 0.8188 -4.2445 -2.2310 13 6 1.3870 -5.1855 -3.3022 14 7 0.0215 -5.6909 -3.5087 15 6 -0.5329 -6.8434 -3.9338 16 8 0.1748 -7.7741 -4.2559 17 6 -2.0322 -6.9757 -4.0088 18 16 -2.4628 -8.6275 -4.6106 19 6 -4.2207 -8.5087 -4.5993 20 1 -4.6981 -7.5946 -4.2787 21 6 -4.9920 -9.5903 -5.0015 22 7 -4.4102 -10.7046 -5.3919 23 14 -6.8557 -9.4641 -4.9903 24 1 -7.3735 -9.9035 -3.6696 25 1 -7.2580 -8.0558 -5.2360 26 1 -7.4171 -10.3325 -6.0560 27 6 -0.4729 -4.3827 -3.0534 28 1 -0.3633 -1.0248 0.0754 29 1 -0.3633 0.5778 0.8498 30 1 -0.3633 0.4472 -0.9253 31 1 1.7325 1.8608 -0.9375 32 1 1.5636 1.9257 0.8331 33 1 3.9099 2.3512 0.1310 34 1 3.7813 0.8567 1.0906 35 1 3.8887 1.0354 -1.9559 36 1 5.1998 0.4715 -0.8905 37 1 3.7814 -1.3836 -0.0953 38 1 3.9100 -1.4302 -1.8708 39 1 1.7847 -2.5452 -3.0604 40 1 0.7666 -4.6819 -1.2339 41 1 2.0713 -5.9344 -2.9033 42 1 1.7925 -4.6636 -4.1689 43 1 -2.4294 -6.2249 -4.6918 44 1 -2.4602 -6.8276 -3.0173 45 1 -3.4424 -10.7698 -5.3988 46 1 -0.5582 -3.6483 -3.8542 47 1 -1.3734 -4.4476 -2.4425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704534545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:15 Heat of formation + Delta-G solvation = -29.410366 kcal Electronic energy + Delta-G solvation = -26937.671808 eV Core-core repulsion = 23054.928086 eV Total energy + Delta-G solvation = -3882.743722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12614 -40.17344 -38.42450 -37.52942 -34.44958 -33.80236 -32.54928 -31.77374 -30.39993 -28.00242 -27.16914 -26.21201 -24.89459 -24.58063 -23.42210 -22.04219 -21.07974 -20.22265 -19.20237 -18.25731 -17.70319 -17.23417 -16.76353 -16.06169 -15.91698 -15.62385 -15.31033 -14.96518 -14.84441 -14.55943 -14.38090 -13.98984 -13.84568 -13.63232 -13.53910 -13.27994 -13.07281 -12.95503 -12.72370 -12.52257 -12.40169 -12.13900 -11.98387 -11.88369 -11.86845 -11.47565 -11.33577 -11.23950 -10.94942 -10.92053 -10.20185 -10.02767 -9.66968 -9.60256 -9.44560 -9.03391 -8.80555 -8.77697 -8.25664 -6.70591 -6.64282 -4.02751 2.16259 2.30030 2.71535 2.94411 3.28387 3.37093 3.38908 3.46741 3.55128 3.95271 4.12545 4.21120 4.23265 4.37707 4.41711 4.52412 4.58792 4.68348 4.73170 4.81012 4.93962 5.00608 5.08070 5.08423 5.15362 5.20490 5.23214 5.24868 5.29809 5.37659 5.40378 5.42415 5.54016 5.58194 5.58945 5.70703 5.74999 5.78627 5.83090 5.98201 6.05532 6.45692 6.58539 7.03125 7.65277 7.81020 7.90589 8.34308 8.48102 9.24846 10.79665 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023542 B = 0.001847 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.061377 B =15159.885025 C =16104.877504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.071 3.929 8 H 0.062 0.938 9 C 0.520 3.480 10 O -0.512 6.512 11 N -0.718 5.718 12 C 0.112 3.888 13 C 0.098 3.902 14 N -0.649 5.649 15 C 0.566 3.434 16 O -0.511 6.511 17 C -0.122 4.122 18 S -0.115 6.115 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.279 1.279 27 C 0.086 3.914 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.278 0.722 46 H 0.086 0.914 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.725 29.023 8.444 34.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.246 5.246 3 C -0.072 4.072 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.041 4.041 8 H 0.080 0.920 9 C 0.305 3.695 10 O -0.385 6.385 11 N -0.371 5.371 12 C 0.005 3.995 13 C -0.026 4.026 14 N -0.388 5.388 15 C 0.355 3.645 16 O -0.384 6.384 17 C -0.273 4.273 18 S 0.111 5.889 19 C -0.755 4.755 20 H 0.085 0.915 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.039 4.039 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.237 0.763 40 H 0.152 0.848 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.091 25.995 8.740 31.797 hybrid contribution 0.255 2.731 -0.546 2.797 sum 16.346 28.726 8.195 34.052 Atomic orbital electron populations 1.22614 0.86324 1.04365 1.00177 1.61653 1.08433 1.13128 1.41338 1.22154 0.95730 0.88493 1.00788 1.21630 0.94309 1.00332 0.99543 1.21577 1.00358 0.95025 0.98775 1.21567 0.91269 0.98236 1.03548 1.21605 0.96639 0.91827 0.94042 0.92032 1.20510 0.78749 0.87031 0.83187 1.90721 1.44165 1.72126 1.31507 1.45843 1.61889 1.16148 1.13220 1.22909 0.93544 0.82341 1.00671 1.23213 0.87282 0.95471 0.96681 1.49295 1.08935 1.12228 1.68349 1.19893 0.89998 0.79658 0.74925 1.90727 1.63454 1.37359 1.46880 1.23254 0.92779 1.05883 1.05397 1.84824 1.08072 1.10206 1.85787 1.23718 0.89997 1.05646 1.56184 0.91528 1.26070 1.07326 0.91385 0.92730 1.70773 1.13205 1.26437 1.41354 0.83283 0.72552 0.75608 0.77212 1.20999 1.21296 1.20473 1.23531 0.98974 0.84429 0.96938 0.89218 0.91079 0.96051 0.94817 0.90188 0.91245 0.90744 0.91966 0.91090 0.90142 0.90813 0.76253 0.84833 0.89561 0.89736 0.88984 0.88850 0.90963 0.89590 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.10 60.06 0.55 0.65 16 2 N -0.52 -4.10 4.51 -236.33 -1.07 -5.17 16 3 C 0.06 0.32 5.46 -3.83 -0.02 0.30 16 4 C -0.12 -0.57 6.09 -26.65 -0.16 -0.73 16 5 C -0.12 -0.50 6.00 -26.61 -0.16 -0.66 16 6 C -0.11 -0.57 5.36 -26.65 -0.14 -0.72 16 7 C 0.07 0.47 2.24 -68.88 -0.15 0.31 16 8 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 9 C 0.52 4.51 6.27 -10.98 -0.07 4.44 16 10 O -0.51 -6.56 14.11 5.56 0.08 -6.48 16 11 N -0.72 -4.65 5.39 -53.48 -0.29 -4.94 16 12 C 0.11 0.98 4.62 -67.68 -0.31 0.67 16 13 C 0.10 0.97 8.38 -8.51 -0.07 0.90 16 14 N -0.65 -9.03 3.69 -185.09 -0.68 -9.72 16 15 C 0.57 10.96 8.10 -10.98 -0.09 10.87 16 16 O -0.51 -11.89 16.64 5.56 0.09 -11.80 16 17 C -0.12 -2.55 5.98 36.01 0.22 -2.33 16 18 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 19 C -0.61 -17.65 9.50 30.94 0.29 -17.36 16 20 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 21 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 22 N -0.88 -27.62 13.67 55.49 0.76 -26.86 16 23 Si 1.09 25.12 29.92 -169.99 -5.09 20.04 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.09 0.86 8.25 -8.38 -0.07 0.79 16 28 H 0.09 0.93 5.62 -51.93 -0.29 0.63 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.40 1.44 8.76 -40.82 -0.36 1.08 16 40 H 0.13 1.42 7.45 -51.93 -0.39 1.04 16 41 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 45 H 0.28 8.88 7.12 -40.82 -0.29 8.58 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -37.58 394.73 -10.36 -47.94 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.71 Total: -1.77 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.29 Total: -1.94 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.28 Total: -46.68 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.17 Total: -18.28 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.58 -10.36 -47.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704534545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.525 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds