Wall clock time and date at job start Wed Apr 1 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46848 * 111.00005 * 2 1 4 4 C 1.53045 * 109.52187 * 174.15971 * 3 2 1 5 5 C 1.53111 * 109.27687 * 59.18044 * 4 3 2 6 6 C 1.53117 * 109.16532 * 302.34372 * 5 4 3 7 7 C 1.46843 * 111.00200 * 235.79148 * 2 1 3 8 8 H 1.08999 * 109.46284 * 65.83076 * 7 2 1 9 9 C 1.50700 * 109.46178 * 305.85423 * 7 2 1 10 10 O 1.21280 * 120.00236 * 340.00045 * 9 7 2 11 11 N 1.34779 * 120.00053 * 159.99943 * 9 7 2 12 12 C 1.46501 * 120.00125 * 180.02562 * 11 9 7 13 13 C 1.53494 * 114.20544 * 204.99700 * 12 11 9 14 14 N 1.47065 * 87.98686 * 220.14297 * 13 12 11 15 15 C 1.34776 * 136.05938 * 207.08209 * 14 13 12 16 16 O 1.21278 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99821 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46970 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00052 * 179.97438 * 18 17 15 20 20 H 1.07990 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99752 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99984 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99474 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00081 * 23 21 19 27 27 C 1.47067 * 87.88362 * 27.34331 * 14 13 12 28 28 H 1.08993 * 109.46844 * 184.20736 * 1 2 3 29 29 H 1.09000 * 109.47130 * 304.21178 * 1 2 3 30 30 H 1.09002 * 109.47092 * 64.20728 * 1 2 3 31 31 H 1.08992 * 109.46402 * 294.17609 * 3 2 1 32 32 H 1.09000 * 109.46548 * 54.15904 * 3 2 1 33 33 H 1.09000 * 109.49664 * 179.11937 * 4 3 2 34 34 H 1.08996 * 109.50046 * 299.23720 * 4 3 2 35 35 H 1.09000 * 109.52459 * 62.25051 * 5 4 3 36 36 H 1.09005 * 109.52266 * 182.43412 * 5 4 3 37 37 H 1.08999 * 109.49918 * 297.71847 * 6 5 4 38 38 H 1.08997 * 109.50487 * 177.59795 * 6 5 4 39 39 H 0.97004 * 119.99933 * 359.97438 * 11 9 7 40 40 H 1.09004 * 113.28039 * 338.06462 * 12 11 9 41 41 H 1.09009 * 113.46427 * 105.36470 * 13 12 11 42 42 H 1.08994 * 113.52279 * 334.93767 * 13 12 11 43 43 H 1.08993 * 109.47027 * 60.00415 * 17 15 14 44 44 H 1.09001 * 109.47164 * 300.00041 * 17 15 14 45 45 H 0.97000 * 119.99520 * 359.97438 * 22 21 19 46 46 H 1.08997 * 113.46659 * 87.43570 * 27 14 13 47 47 H 1.09001 * 113.47017 * 217.87600 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0209 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3983 -2.1543 -1.1206 10 8 0.9165 -2.5973 -0.0995 11 7 1.3997 -2.8996 -2.2436 12 6 0.8188 -4.2445 -2.2310 13 6 1.3870 -5.1855 -3.3022 14 7 0.0215 -5.6909 -3.5087 15 6 -0.5329 -6.8434 -3.9338 16 8 0.1748 -7.7741 -4.2559 17 6 -2.0322 -6.9757 -4.0088 18 16 -2.4628 -8.6275 -4.6106 19 6 -4.2207 -8.5087 -4.5993 20 1 -4.6981 -7.5946 -4.2787 21 6 -4.9920 -9.5903 -5.0015 22 7 -4.4102 -10.7046 -5.3919 23 14 -6.8557 -9.4641 -4.9903 24 1 -7.3735 -9.9035 -3.6696 25 1 -7.2580 -8.0558 -5.2360 26 1 -7.4171 -10.3325 -6.0560 27 6 -0.4729 -4.3827 -3.0534 28 1 -0.3633 -1.0248 0.0754 29 1 -0.3633 0.5778 0.8498 30 1 -0.3633 0.4472 -0.9253 31 1 1.7325 1.8608 -0.9375 32 1 1.5636 1.9257 0.8331 33 1 3.9099 2.3512 0.1310 34 1 3.7813 0.8567 1.0906 35 1 3.8887 1.0354 -1.9559 36 1 5.1998 0.4715 -0.8905 37 1 3.7814 -1.3836 -0.0953 38 1 3.9100 -1.4302 -1.8708 39 1 1.7847 -2.5452 -3.0604 40 1 0.7666 -4.6819 -1.2339 41 1 2.0713 -5.9344 -2.9033 42 1 1.7925 -4.6636 -4.1689 43 1 -2.4294 -6.2249 -4.6918 44 1 -2.4602 -6.8276 -3.0173 45 1 -3.4424 -10.7698 -5.3988 46 1 -0.5582 -3.6483 -3.8542 47 1 -1.3734 -4.4476 -2.4425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704534545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:14 Heat of formation + Delta-G solvation = -58.132285 kcal Electronic energy + Delta-G solvation = -26938.917284 eV Core-core repulsion = 23054.928086 eV Total energy + Delta-G solvation = -3883.989198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95300 -41.04989 -39.38748 -38.54578 -35.18901 -34.77950 -34.32840 -32.43970 -31.70805 -29.14346 -27.75152 -27.22032 -26.94903 -25.24147 -23.90176 -22.89637 -21.72408 -20.83561 -20.58198 -19.96410 -18.38492 -18.24106 -17.88884 -17.36147 -16.74393 -16.42907 -16.18712 -16.03999 -15.84289 -15.68742 -15.42307 -15.20951 -14.84293 -14.72406 -14.48104 -14.07473 -14.01358 -13.92174 -13.87508 -13.77207 -13.65540 -13.26194 -13.05216 -12.76892 -12.71017 -12.36558 -12.24454 -11.95609 -11.85965 -11.61101 -11.60753 -11.32924 -11.23113 -11.13314 -10.64221 -10.37945 -10.20425 -9.94734 -9.28108 -8.95741 -8.92123 -6.31766 1.00547 1.35611 1.48501 1.49310 1.59758 1.63667 1.78704 2.14814 2.30622 2.93953 2.99348 2.99820 3.17183 3.41970 3.59897 3.76396 3.82364 3.94624 4.00675 4.06491 4.10706 4.17440 4.26853 4.31821 4.33236 4.44187 4.47395 4.51241 4.51770 4.60036 4.70592 4.78356 4.83042 4.83891 4.99053 5.05904 5.08160 5.21184 5.27276 5.36487 5.47313 5.61129 5.94841 6.10668 6.11912 6.37161 6.52075 6.90678 7.02943 7.19558 8.47731 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023542 B = 0.001847 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.061377 B =15159.885025 C =16104.877504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.106 4.106 7 C 0.074 3.926 8 H 0.087 0.913 9 C 0.520 3.480 10 O -0.558 6.558 11 N -0.698 5.698 12 C 0.129 3.871 13 C 0.099 3.901 14 N -0.649 5.649 15 C 0.565 3.435 16 O -0.563 6.563 17 C -0.100 4.100 18 S -0.191 6.191 19 C -0.615 4.615 20 H 0.074 0.926 21 C -0.018 4.018 22 N -0.911 5.911 23 Si 1.139 2.861 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.277 1.277 27 C 0.086 3.914 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.422 0.578 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.261 0.739 46 H 0.119 0.881 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.909 32.573 7.886 37.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.038 4.038 8 H 0.104 0.896 9 C 0.306 3.694 10 O -0.435 6.435 11 N -0.352 5.352 12 C 0.021 3.979 13 C -0.023 4.023 14 N -0.385 5.385 15 C 0.354 3.646 16 O -0.441 6.441 17 C -0.251 4.251 18 S 0.035 5.965 19 C -0.762 4.762 20 H 0.093 0.907 21 C -0.222 4.222 22 N -0.547 5.547 23 Si 0.957 3.043 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.202 1.202 27 C -0.038 4.038 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.332 29.642 8.182 34.818 hybrid contribution 0.326 1.795 -0.283 1.846 sum 16.658 31.436 7.899 36.443 Atomic orbital electron populations 1.22495 0.86857 1.02800 1.00884 1.61625 1.08228 1.14556 1.42493 1.22204 0.96238 0.87359 1.01326 1.21639 0.93743 1.01236 0.99156 1.21578 1.00658 0.94070 0.99072 1.21593 0.90403 0.99211 1.03240 1.21670 0.97125 0.90274 0.94713 0.89592 1.20977 0.77877 0.87787 0.82713 1.90715 1.46253 1.73180 1.33346 1.45600 1.61110 1.14825 1.13685 1.22428 0.92987 0.83235 0.99203 1.23520 0.85215 0.95336 0.98277 1.49151 1.11616 1.11959 1.65821 1.19459 0.89031 0.80762 0.75343 1.90702 1.64054 1.39579 1.49789 1.23114 0.94718 1.01425 1.05872 1.85035 1.08329 1.16352 1.86748 1.24043 0.90559 1.06003 1.55594 0.90735 1.27861 1.12165 0.90673 0.91458 1.70894 1.12215 1.27870 1.43676 0.82684 0.66628 0.77045 0.77957 1.19329 1.18647 1.20247 1.23867 0.99332 0.82684 0.97912 0.91773 0.90910 0.94884 0.93703 0.90292 0.89697 0.92337 0.90510 0.90319 0.92480 0.88805 0.73946 0.86882 0.90305 0.86115 0.87208 0.87673 0.92835 0.86285 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.10 127.69 1.16 1.43 16 2 N -0.54 -7.83 4.51 -901.61 -4.07 -11.89 16 3 C 0.06 0.53 5.46 86.33 0.47 1.00 16 4 C -0.12 -0.89 6.09 30.65 0.19 -0.70 16 5 C -0.12 -0.63 6.00 30.67 0.18 -0.45 16 6 C -0.11 -0.87 5.36 30.65 0.16 -0.71 16 7 C 0.07 0.80 2.24 44.19 0.10 0.90 16 8 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 9 C 0.52 8.12 6.27 87.66 0.55 8.66 16 10 O -0.56 -14.24 14.11 -3.03 -0.04 -14.28 16 11 N -0.70 -6.97 5.39 -441.52 -2.38 -9.35 16 12 C 0.13 1.98 4.62 45.55 0.21 2.19 16 13 C 0.10 1.72 8.38 83.17 0.70 2.42 16 14 N -0.65 -16.95 3.69 -857.88 -3.16 -20.12 16 15 C 0.57 21.76 8.10 87.66 0.71 22.47 16 16 O -0.56 -26.84 16.64 -3.02 -0.05 -26.89 16 17 C -0.10 -4.14 5.98 71.24 0.43 -3.71 16 18 S -0.19 -10.74 19.60 -56.49 -1.11 -11.85 16 19 C -0.61 -35.91 9.50 67.95 0.65 -35.26 16 20 H 0.07 4.10 7.80 -2.92 -0.02 4.07 16 21 C -0.02 -1.07 5.49 84.86 0.47 -0.61 16 22 N -0.91 -58.30 13.67 21.65 0.30 -58.01 16 23 Si 1.14 49.72 29.92 68.60 2.05 51.77 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 C 0.09 1.45 8.25 83.26 0.69 2.14 16 28 H 0.06 1.33 5.62 -2.39 -0.01 1.31 16 29 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.23 8.14 -2.39 -0.02 0.22 16 36 H 0.08 0.33 8.14 -2.38 -0.02 0.32 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.42 1.13 8.76 -92.71 -0.81 0.32 16 40 H 0.11 2.34 7.45 -2.39 -0.02 2.32 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.05 16 45 H 0.26 17.35 7.12 -92.71 -0.66 16.69 16 46 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -86.32 394.73 -1.54 -87.86 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.26 Total: 12.98 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.66 Total: -0.23 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -9.31 Total: -99.36 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.09 Total: -41.17 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.05 Total: 51.77 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.11 Total: -11.85 kcal Total: -86.32 -1.54 -87.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704534545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.728 kcal (2) G-P(sol) polarization free energy of solvation -86.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds