Wall clock time and date at job start Wed Apr 1 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48537 * 110.99845 * 2 1 4 4 C 1.54934 * 103.22756 * 159.71854 * 3 2 1 5 5 C 1.54593 * 102.92340 * 322.58319 * 4 3 2 6 6 C 1.47910 * 111.00006 * 117.39209 * 2 1 3 7 7 H 1.09003 * 110.07814 * 333.60119 * 6 2 1 8 8 C 1.50693 * 109.91371 * 94.80427 * 6 2 1 9 9 O 1.21279 * 120.00633 * 17.59594 * 8 6 2 10 10 N 1.34789 * 119.99700 * 197.58879 * 8 6 2 11 11 C 1.47059 * 136.05432 * 4.94720 * 10 8 6 12 12 C 1.53501 * 87.98292 * 152.91331 * 11 10 8 13 13 C 1.47064 * 136.05768 * 184.98906 * 10 8 6 14 14 H 1.09006 * 113.46072 * 92.25073 * 13 10 8 15 15 C 1.52998 * 113.46887 * 321.87221 * 13 10 8 16 16 N 1.46495 * 109.47340 * 175.89570 * 15 13 10 17 17 C 1.34777 * 120.00512 * 175.02010 * 16 15 13 18 18 O 1.21280 * 119.99709 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00224 * 179.97438 * 17 16 15 20 20 S 1.80997 * 109.46919 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99894 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00146 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99717 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00598 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99654 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47110 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47223 * 119.99888 * 25 23 21 28 28 H 1.48502 * 109.47000 * 239.99701 * 25 23 21 29 29 H 1.08996 * 109.47720 * 302.60537 * 1 2 3 30 30 H 1.09000 * 109.47124 * 62.61283 * 1 2 3 31 31 H 1.09004 * 109.47062 * 182.60650 * 1 2 3 32 32 H 1.08999 * 110.66564 * 41.28113 * 3 2 1 33 33 H 1.09003 * 110.80866 * 278.21647 * 3 2 1 34 34 H 1.09000 * 110.72668 * 204.22631 * 4 3 2 35 35 H 1.08997 * 110.88064 * 81.01163 * 4 3 2 36 36 H 1.09000 * 110.31062 * 263.04649 * 5 4 3 37 37 H 1.09000 * 110.39491 * 140.91458 * 5 4 3 38 38 H 1.09007 * 113.46461 * 267.68907 * 11 10 8 39 39 H 1.08995 * 113.47111 * 38.07021 * 11 10 8 40 40 H 1.09006 * 114.20246 * 272.47226 * 12 11 10 41 41 H 1.09007 * 114.20658 * 139.65585 * 12 11 10 42 42 H 1.09005 * 109.47507 * 55.89762 * 15 13 10 43 43 H 1.09001 * 109.47038 * 295.89507 * 15 13 10 44 44 H 0.97002 * 119.99988 * 355.02639 * 16 15 13 45 45 H 1.09001 * 109.47228 * 300.00334 * 19 17 16 46 46 H 1.08997 * 109.46693 * 60.00898 * 19 17 16 47 47 H 0.96996 * 120.00547 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 0.5228 5 6 3.2982 0.1055 1.5932 6 6 1.9990 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0897 0.9642 9 8 2.3971 -2.4921 -0.1753 10 7 2.4427 -2.9436 1.9964 11 6 2.3086 -2.8703 3.4590 12 6 1.9875 -4.3713 3.4506 13 6 2.8114 -4.3583 2.1557 14 1 3.8783 -4.5132 2.3173 15 6 2.2414 -5.2635 1.0617 16 7 2.7399 -6.6283 1.2482 17 6 2.2903 -7.6239 0.4588 18 8 1.4732 -7.3897 -0.4063 19 6 2.8036 -9.0278 0.6503 20 16 2.0165 -10.1272 -0.5529 21 6 2.7765 -11.6552 -0.1140 22 1 3.4938 -11.6894 0.6925 23 6 2.4541 -12.8145 -0.8058 24 7 1.5802 -12.7727 -1.7892 25 14 3.2593 -14.4344 -0.3401 26 1 4.1970 -14.2142 0.7901 27 1 2.2140 -15.4081 0.0659 28 1 4.0072 -14.9687 -1.5064 29 1 -0.3634 0.5537 0.8656 30 1 -0.3633 0.4727 -0.9125 31 1 -0.3633 -1.0266 0.0467 32 1 1.4236 2.0205 0.6729 33 1 2.0040 1.8004 -1.0085 34 1 3.8122 2.1353 0.9716 35 1 4.1140 0.8848 -0.2770 36 1 3.2134 0.5488 2.5853 37 1 4.1466 -0.5777 1.5559 38 1 3.2414 -2.6288 3.9688 39 1 1.4756 -2.2490 3.7880 40 1 0.9319 -4.6017 3.3065 41 1 2.4455 -4.9309 4.2662 42 1 2.5529 -4.8933 0.0849 43 1 1.1530 -5.2630 1.1203 44 1 3.3937 -6.8156 1.9400 45 1 3.8836 -9.0429 0.5038 46 1 2.5689 -9.3658 1.6597 47 1 1.3551 -13.5828 -2.2729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705187662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:37 Heat of formation + Delta-G solvation = -18.993740 kcal Electronic energy + Delta-G solvation = -26989.203445 eV Core-core repulsion = 23106.911421 eV Total energy + Delta-G solvation = -3882.292024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07613 -39.58695 -38.79780 -37.37213 -34.38381 -32.68683 -32.39922 -31.11718 -29.95211 -28.97838 -27.61178 -26.08846 -25.45091 -23.40084 -23.32611 -21.65178 -21.24712 -20.42786 -19.10445 -17.92016 -17.45772 -16.71174 -16.56975 -16.31858 -15.93637 -15.27686 -15.04502 -14.79270 -14.76433 -14.50981 -14.25235 -14.09609 -13.85040 -13.75733 -13.30860 -13.12990 -12.91702 -12.78978 -12.52364 -12.36213 -12.31668 -12.03521 -11.87613 -11.81139 -11.66737 -11.52127 -11.27262 -11.05133 -10.98914 -10.95894 -10.72472 -9.89018 -9.77634 -9.35346 -9.04932 -9.03601 -8.84595 -8.77843 -8.18553 -6.46214 -6.18623 -3.88896 2.26463 2.42921 3.11229 3.17185 3.23570 3.30721 3.35906 3.53047 3.81815 3.89152 4.00929 4.10457 4.23055 4.33351 4.40258 4.52262 4.61568 4.71079 4.78517 4.90742 4.93915 4.95704 4.96687 5.04340 5.14440 5.16352 5.22473 5.25887 5.35044 5.38440 5.40538 5.52624 5.59050 5.60851 5.69044 5.70013 5.82807 5.94488 6.10093 6.17305 6.34785 6.53226 6.64269 7.42922 7.62627 7.74683 8.02365 8.38339 8.68276 9.26527 10.88847 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.001843 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.338687 B =15187.813355 C =15701.085593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.500 5.500 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.117 4.117 6 C 0.056 3.944 7 H 0.072 0.928 8 C 0.546 3.454 9 O -0.500 6.500 10 N -0.647 5.647 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.125 3.875 14 H 0.098 0.902 15 C 0.117 3.883 16 N -0.737 5.737 17 C 0.531 3.469 18 O -0.514 6.514 19 C -0.152 4.152 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 30.327 15.895 34.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.224 5.224 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.155 4.155 6 C -0.056 4.056 7 H 0.090 0.910 8 C 0.334 3.666 9 O -0.372 6.372 10 N -0.386 5.386 11 C -0.024 4.024 12 C -0.188 4.188 13 C 0.021 3.979 14 H 0.116 0.884 15 C -0.008 4.008 16 N -0.392 5.392 17 C 0.317 3.683 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.910 30.306 12.970 33.020 hybrid contribution 1.464 -0.942 2.419 2.980 sum 3.374 29.364 15.389 33.323 Atomic orbital electron populations 1.22552 0.86918 1.02533 1.01120 1.64305 1.08528 1.14577 1.34962 1.23271 0.94886 0.89176 1.01759 1.22493 0.96939 0.98184 0.98485 1.22310 0.96005 0.97729 0.99503 1.22265 0.98210 0.92164 0.92986 0.91015 1.20037 0.76852 0.86208 0.83541 1.90768 1.48418 1.77353 1.20647 1.49773 1.70372 1.11477 1.06975 1.22957 1.01635 0.97357 0.80406 1.23585 1.01984 0.95793 0.97480 1.22850 0.99626 0.81106 0.94271 0.88384 1.21430 0.99345 0.80979 0.99026 1.45847 1.47191 1.07683 1.38490 1.20300 0.81176 0.86138 0.80670 1.90723 1.32143 1.83535 1.32346 1.23519 1.04758 0.95307 1.06657 1.85456 1.56375 1.00224 1.41356 1.22911 1.29539 0.93767 1.22064 0.90870 1.25002 0.95102 0.98999 0.94577 1.70030 1.31076 1.28951 1.20201 0.86113 0.78996 0.81904 0.78439 1.19632 1.20590 1.20591 0.95337 0.90562 0.91093 0.93480 0.89348 0.90501 0.90198 0.90428 0.90565 0.89562 0.90384 0.88225 0.88746 0.90127 0.91031 0.76990 0.89215 0.89203 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 60.06 0.56 0.71 16 2 N -0.50 -4.91 4.76 -232.16 -1.10 -6.01 16 3 C 0.04 0.25 6.56 -1.90 -0.01 0.24 16 4 C -0.12 -0.76 7.06 -24.87 -0.18 -0.93 16 5 C -0.12 -0.75 6.56 -25.37 -0.17 -0.92 16 6 C 0.06 0.48 2.70 -67.79 -0.18 0.30 16 7 H 0.07 0.50 7.74 -51.93 -0.40 0.10 16 8 C 0.55 6.51 7.04 -10.98 -0.08 6.43 16 9 O -0.50 -8.51 15.94 5.56 0.09 -8.42 16 10 N -0.65 -5.93 3.57 -177.47 -0.63 -6.57 16 11 C 0.10 0.48 8.42 -8.51 -0.07 0.41 16 12 C -0.15 -0.87 8.02 -26.22 -0.21 -1.08 16 13 C 0.13 1.11 4.08 -72.40 -0.30 0.82 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.12 1.60 5.39 -4.05 -0.02 1.57 16 16 N -0.74 -10.27 5.55 -60.29 -0.33 -10.60 16 17 C 0.53 10.42 7.85 -10.98 -0.09 10.33 16 18 O -0.51 -12.52 15.86 5.56 0.09 -12.43 16 19 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 25 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.03 0.18 8.01 -51.93 -0.42 -0.23 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.26 7.96 -51.93 -0.41 -0.16 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.68 7.95 -51.93 -0.41 0.27 16 41 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.08 1.40 7.05 -51.93 -0.37 1.03 16 43 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 44 H 0.40 4.00 8.48 -40.82 -0.35 3.66 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -39.45 401.14 -10.45 -49.89 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.78 Total: -0.63 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.32 Total: 1.85 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -1.34 Total: -49.00 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.86 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.45 -10.45 -49.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.901 kcal (2) G-P(sol) polarization free energy of solvation -39.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds