Wall clock time and date at job start Wed Apr 1 2020 01:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47846 * 111.00525 * 2 1 4 4 C 1.54899 * 104.80097 * 213.63577 * 3 2 1 5 5 C 1.55146 * 101.65602 * 37.06675 * 4 3 2 6 6 C 1.47446 * 111.00358 * 239.15669 * 2 1 3 7 7 H 1.09009 * 109.88543 * 242.82961 * 6 2 1 8 8 C 1.50696 * 109.88624 * 3.84899 * 6 2 1 9 9 O 1.21287 * 119.99820 * 53.53743 * 8 6 2 10 10 N 1.34770 * 120.00172 * 233.53214 * 8 6 2 11 11 C 1.47064 * 136.06142 * 4.52332 * 10 8 6 12 12 C 1.53492 * 87.98931 * 207.08021 * 11 10 8 13 13 C 1.47073 * 136.05700 * 184.14876 * 10 8 6 14 14 H 1.08997 * 113.46655 * 267.69681 * 13 10 8 15 15 C 1.52994 * 113.46772 * 38.13410 * 13 10 8 16 16 N 1.46503 * 109.47198 * 185.82756 * 15 13 10 17 17 C 1.34774 * 119.99908 * 184.95686 * 16 15 13 18 18 O 1.21276 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.50710 * 119.99884 * 180.02562 * 17 16 15 20 20 S 1.81002 * 109.46961 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99710 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00239 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00096 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47200 * 59.99739 * 25 23 21 27 27 H 1.48505 * 109.47260 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46994 * 299.99526 * 25 23 21 29 29 H 1.08999 * 109.47256 * 172.13213 * 1 2 3 30 30 H 1.09002 * 109.46850 * 52.13962 * 1 2 3 31 31 H 1.08991 * 109.47201 * 292.14026 * 1 2 3 32 32 H 1.09009 * 110.36813 * 332.46642 * 3 2 1 33 33 H 1.09002 * 110.37720 * 94.80184 * 3 2 1 34 34 H 1.08997 * 110.99024 * 278.97712 * 4 3 2 35 35 H 1.08996 * 110.99599 * 155.15950 * 4 3 2 36 36 H 1.08996 * 110.71043 * 205.97053 * 5 4 3 37 37 H 1.08996 * 110.85316 * 82.79513 * 5 4 3 38 38 H 1.09007 * 113.46416 * 321.86183 * 11 10 8 39 39 H 1.08999 * 113.46985 * 92.29506 * 11 10 8 40 40 H 1.09007 * 114.20375 * 87.51688 * 12 11 10 41 41 H 1.08998 * 114.21036 * 220.14222 * 12 11 10 42 42 H 1.08999 * 109.47558 * 305.82605 * 15 13 10 43 43 H 1.09001 * 109.47206 * 65.83028 * 15 13 10 44 44 H 0.96995 * 119.99681 * 4.95506 * 16 15 13 45 45 H 1.09007 * 109.46611 * 299.99886 * 19 17 16 46 46 H 1.08996 * 109.47099 * 59.99419 * 19 17 16 47 47 H 0.97003 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 -0.8295 5 6 2.9160 0.2821 -1.9315 6 6 1.9974 -0.7057 -1.1818 7 1 2.5673 -1.5802 -0.8674 8 6 0.8612 -1.1292 -2.0766 9 8 0.0487 -0.3113 -2.4533 10 7 0.7479 -2.4168 -2.4582 11 6 1.4498 -3.6747 -2.1623 12 6 1.0194 -4.1777 -3.5471 13 6 -0.1364 -3.1833 -3.3490 14 1 -0.9977 -3.6150 -2.8391 15 6 -0.5194 -2.4291 -4.6238 16 7 -1.5051 -3.2098 -5.3756 17 6 -1.9160 -2.7880 -6.5879 18 8 -1.4703 -1.7620 -7.0562 19 6 -2.9304 -3.5908 -7.3611 20 16 -3.2737 -2.7711 -8.9379 21 6 -4.4536 -3.8912 -9.6146 22 1 -4.7458 -4.7693 -9.0577 23 6 -5.0082 -3.6447 -10.8627 24 7 -4.6524 -2.5743 -11.5412 25 14 -6.2597 -4.8318 -11.5798 26 1 -7.4346 -4.9181 -10.6758 27 1 -6.6954 -4.3458 -12.9137 28 1 -5.6433 -6.1755 -11.7203 29 1 -0.3634 -1.0180 -0.1407 30 1 -0.3633 0.6307 -0.8114 31 1 -0.3633 0.3873 0.9518 32 1 1.2889 2.0592 -0.4724 33 1 2.2148 1.7039 1.0182 34 1 4.1302 0.9281 -0.2242 35 1 3.5496 2.2719 -1.2639 36 1 3.8001 -0.2281 -2.3136 37 1 2.3754 0.7723 -2.7411 38 1 2.5285 -3.5560 -2.0595 39 1 1.0068 -4.2359 -1.3396 40 1 1.7065 -3.9149 -4.3515 41 1 0.7123 -5.2234 -3.5673 42 1 -0.9472 -1.4621 -4.3593 43 1 0.3688 -2.2780 -5.2373 44 1 -1.8618 -4.0302 -5.0009 45 1 -2.5362 -4.5895 -7.5494 46 1 -3.8511 -3.6668 -6.7826 47 1 -5.0403 -2.4017 -12.4134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705187663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:40 Heat of formation + Delta-G solvation = -15.897078 kcal Electronic energy + Delta-G solvation = -27214.602478 eV Core-core repulsion = 23332.444736 eV Total energy + Delta-G solvation = -3882.157742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37266 -39.81948 -38.85025 -37.29792 -34.44731 -32.49655 -32.41914 -31.20042 -30.00610 -29.08856 -27.66989 -25.96264 -25.46975 -23.50346 -23.37112 -21.70539 -21.25534 -20.45190 -19.01266 -18.00285 -17.66184 -16.74759 -16.59305 -16.28747 -15.92081 -15.40523 -15.30530 -14.98790 -14.79493 -14.71246 -14.29310 -13.95129 -13.87738 -13.47030 -13.23800 -13.14247 -13.01456 -12.74196 -12.55014 -12.37521 -12.26522 -11.97425 -11.87050 -11.72732 -11.63467 -11.52376 -11.24494 -11.04042 -11.03433 -10.98892 -10.75615 -10.22686 -9.81914 -9.41483 -9.17530 -9.05554 -8.88315 -8.64045 -8.22604 -6.49022 -6.20440 -3.91210 2.14567 2.26573 3.08467 3.11813 3.23977 3.28362 3.33121 3.60406 3.75405 3.79249 3.94638 4.15799 4.21291 4.25000 4.47274 4.53497 4.64862 4.71145 4.81780 4.88099 4.95450 4.99886 5.09823 5.14390 5.17803 5.20241 5.28092 5.32472 5.34210 5.44336 5.48100 5.55580 5.61397 5.65954 5.73699 5.77234 5.77520 5.90389 6.00643 6.13985 6.39883 6.50914 6.57597 7.30491 7.59909 7.68683 7.77431 8.35836 8.62492 9.24437 10.86907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.001894 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.878604 B =14779.295100 C =15237.823979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.510 5.510 3 C 0.037 3.963 4 C -0.126 4.126 5 C -0.130 4.130 6 C 0.060 3.940 7 H 0.100 0.900 8 C 0.530 3.470 9 O -0.526 6.526 10 N -0.639 5.639 11 C 0.099 3.901 12 C -0.150 4.150 13 C 0.122 3.878 14 H 0.099 0.901 15 C 0.117 3.883 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.165 -1.980 26.609 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.235 5.235 3 C -0.091 4.091 4 C -0.164 4.164 5 C -0.169 4.169 6 C -0.051 4.051 7 H 0.118 0.882 8 C 0.320 3.680 9 O -0.401 6.401 10 N -0.377 5.377 11 C -0.023 4.023 12 C -0.188 4.188 13 C 0.018 3.982 14 H 0.117 0.883 15 C -0.008 4.008 16 N -0.392 5.392 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.629 0.305 25.987 31.404 hybrid contribution -1.888 -2.066 -0.301 2.815 sum 15.742 -1.761 25.686 30.177 Atomic orbital electron populations 1.22949 0.86870 1.02308 1.02318 1.64096 1.09190 1.15031 1.35132 1.23179 0.95836 0.89218 1.00842 1.22693 0.97646 0.99519 0.96533 1.22765 0.99088 0.96465 0.98543 1.22572 0.93891 0.99175 0.89490 0.88186 1.20747 0.86804 0.80075 0.80398 1.90735 1.43556 1.50505 1.55354 1.49858 1.35316 1.05846 1.46637 1.23007 0.98770 0.82607 0.97957 1.23626 0.97873 0.99856 0.97422 1.22945 0.95082 0.89681 0.90471 0.88331 1.21400 0.93203 0.95578 0.90602 1.45842 1.45569 1.28144 1.19618 1.20311 0.81932 0.85633 0.80332 1.90717 1.55957 1.24174 1.67993 1.23523 0.99674 1.03136 1.03934 1.85438 1.55102 1.33389 1.09425 1.22826 1.28236 1.11236 1.06123 0.90964 1.24999 0.96847 0.95905 0.95880 1.70012 1.41809 1.25330 1.13122 0.86218 0.80676 0.80411 0.78145 1.19946 1.20819 1.19947 0.92122 0.91586 0.91534 0.92760 0.89648 0.90311 0.90179 0.89957 0.90144 0.89942 0.89317 0.88113 0.88642 0.90290 0.90975 0.76914 0.89162 0.89202 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.19 60.06 0.49 0.53 16 2 N -0.51 -4.68 5.44 -232.95 -1.27 -5.95 16 3 C 0.04 0.29 6.73 -2.30 -0.02 0.27 16 4 C -0.13 -0.81 7.08 -24.59 -0.17 -0.98 16 5 C -0.13 -1.01 6.45 -24.90 -0.16 -1.18 16 6 C 0.06 0.52 3.81 -67.88 -0.26 0.26 16 7 H 0.10 0.70 7.33 -51.92 -0.38 0.32 16 8 C 0.53 5.89 5.05 -10.99 -0.06 5.84 16 9 O -0.53 -7.91 13.34 5.55 0.07 -7.84 16 10 N -0.64 -5.68 3.56 -177.31 -0.63 -6.31 16 11 C 0.10 0.48 8.02 -8.52 -0.07 0.41 16 12 C -0.15 -0.82 8.03 -26.09 -0.21 -1.03 16 13 C 0.12 1.04 4.07 -72.27 -0.29 0.75 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.12 1.53 5.51 -4.04 -0.02 1.50 16 16 N -0.74 -9.99 5.55 -60.29 -0.33 -10.33 16 17 C 0.53 10.22 7.85 -10.98 -0.09 10.14 16 18 O -0.51 -12.28 15.86 5.56 0.09 -12.19 16 19 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 25 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.65 7.02 -51.93 -0.36 0.28 16 30 H 0.07 0.83 5.79 -51.93 -0.30 0.53 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.48 7.65 -51.92 -0.40 0.08 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 38 H 0.08 0.28 7.92 -51.92 -0.41 -0.13 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 1.31 7.06 -51.93 -0.37 0.94 16 43 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 44 H 0.40 3.92 8.48 -40.82 -0.35 3.57 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -37.66 392.64 -10.65 -48.31 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.56 Total: 0.86 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.43 Total: 0.59 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -1.50 Total: -48.25 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.16 Total: -20.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.66 -10.65 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.414 kcal (2) G-P(sol) polarization free energy of solvation -37.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds