Wall clock time and date at job start Wed Apr 1 2020 00:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00411 * 2 1 4 4 N 1.46496 * 109.47445 * 124.99690 * 3 2 1 5 5 C 1.34768 * 120.00034 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00160 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99885 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47075 * 299.99646 * 7 5 4 9 9 C 1.53002 * 109.47189 * 60.00349 * 7 5 4 10 10 N 1.46904 * 109.47140 * 179.97438 * 7 5 4 11 11 C 1.46900 * 111.00225 * 155.00062 * 10 7 5 12 12 H 1.08997 * 112.84586 * 23.80406 * 11 10 7 13 13 C 1.53782 * 113.61721 * 155.00315 * 11 10 7 14 14 C 1.53773 * 87.08120 * 140.06507 * 13 11 10 15 15 H 1.09002 * 113.61283 * 219.93374 * 14 13 11 16 16 N 1.46499 * 113.61710 * 89.11601 * 14 13 11 17 17 C 1.34778 * 120.00278 * 154.99418 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99873 * 25 23 21 29 29 C 1.53783 * 87.08561 * 334.56491 * 14 13 11 30 30 H 1.07991 * 120.00362 * 179.97438 * 1 2 3 31 31 H 1.08009 * 119.99638 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99780 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46872 * 4.99369 * 3 2 1 34 34 H 1.09007 * 109.46520 * 244.99601 * 3 2 1 35 35 H 0.96997 * 119.99845 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.47209 * 59.99894 * 9 7 5 37 37 H 1.09001 * 109.46893 * 180.02562 * 9 7 5 38 38 H 1.08995 * 109.46642 * 299.99598 * 9 7 5 39 39 H 1.00907 * 111.00114 * 31.04550 * 10 7 5 40 40 H 1.08999 * 113.61098 * 25.51416 * 13 11 10 41 41 H 1.08998 * 113.60816 * 254.61810 * 13 11 10 42 42 H 0.97000 * 119.99972 * 334.99774 * 16 14 13 43 43 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 44 44 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 45 45 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 46 46 H 1.09000 * 113.61407 * 139.97738 * 29 14 13 47 47 H 1.08998 * 113.61415 * 270.88573 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7791 2.4085 1.3328 6 8 3.7153 3.3554 0.5776 7 6 4.7355 2.4363 2.4970 8 1 4.1773 2.3397 3.4282 9 6 5.7246 1.2756 2.3724 10 7 5.4711 3.7079 2.4962 11 6 5.9403 4.0456 3.8467 12 1 6.0409 3.1719 4.4906 13 6 7.1730 4.9649 3.8587 14 6 6.5187 5.6960 5.0428 15 1 6.6378 6.7789 5.0071 16 7 6.8664 5.1281 6.3477 17 6 6.8140 5.8975 7.4531 18 8 6.4786 7.0598 7.3675 19 6 7.1723 5.3135 8.7953 20 16 7.0042 6.5862 10.0713 21 6 7.4696 5.6565 11.4938 22 1 7.7443 4.6168 11.3934 23 6 7.4891 6.2619 12.7427 24 7 7.1547 7.5292 12.8650 25 14 7.9900 5.2784 14.2498 26 1 9.4575 5.3894 14.4481 27 1 7.2873 5.8112 15.4446 28 1 7.6232 3.8526 14.0547 29 6 5.1672 5.2048 4.4976 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6215 1.4024 -0.9314 35 1 3.0446 0.5748 1.7356 36 1 6.2828 1.3724 1.4412 37 1 6.4161 1.2955 3.2147 38 1 5.1792 0.3320 2.3728 39 1 4.9071 4.4517 2.1129 40 1 7.2675 5.5802 2.9639 41 1 8.0982 4.4512 4.1200 42 1 7.1344 4.1984 6.4162 43 1 8.2013 4.9549 8.7726 44 1 6.5031 4.4831 9.0205 45 1 7.1680 7.9521 13.7379 46 1 4.4732 4.8848 5.2747 47 1 4.7134 5.8857 3.7775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713154528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:05 Heat of formation + Delta-G solvation = -31.983240 kcal Electronic energy + Delta-G solvation = -26032.659092 eV Core-core repulsion = 22149.803802 eV Total energy + Delta-G solvation = -3882.855290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63202 -39.92441 -38.21787 -36.42060 -35.30995 -33.45497 -32.74946 -32.43387 -30.01517 -28.76075 -26.95766 -25.85905 -25.51340 -24.62157 -22.79773 -21.08566 -20.90518 -20.18209 -19.56460 -17.86428 -17.65429 -17.09492 -16.42218 -16.13437 -16.06816 -15.84611 -15.30265 -14.90057 -14.81524 -14.75553 -14.34038 -14.11831 -13.78766 -13.69876 -13.30846 -13.06442 -12.99038 -12.81622 -12.70661 -12.58487 -12.37944 -12.10285 -11.86129 -11.80459 -11.72312 -11.07325 -11.03362 -10.89963 -10.77340 -10.61059 -10.45836 -10.01706 -9.82115 -9.56176 -9.41608 -9.07859 -8.94297 -8.68795 -8.24406 -6.50837 -6.22453 -3.93091 1.45439 2.16973 2.76043 3.00849 3.05917 3.21589 3.27105 3.30916 3.68824 3.76262 4.13287 4.19547 4.25339 4.34759 4.42954 4.46567 4.62757 4.72422 4.78366 4.84197 4.96056 5.10940 5.12487 5.13502 5.17084 5.23843 5.35773 5.47128 5.55520 5.59408 5.67562 5.75024 5.79273 5.82943 5.83198 5.87859 5.90413 6.02206 6.06355 6.12323 6.56103 6.75069 6.93788 7.08214 7.58627 7.70369 7.71907 8.34276 8.60816 9.22825 10.84967 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.001629 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.798766 B =17179.138113 C =17910.821100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.530 6.530 7 C 0.066 3.934 8 H 0.072 0.928 9 C -0.136 4.136 10 N -0.661 5.661 11 C 0.065 3.935 12 H 0.097 0.903 13 C -0.131 4.131 14 C 0.125 3.875 15 H 0.105 0.895 16 N -0.721 5.721 17 C 0.534 3.466 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 C -0.182 4.182 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.358 0.642 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 -18.394 -26.015 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.299 3.701 6 O -0.406 6.406 7 C -0.048 4.048 8 H 0.090 0.910 9 C -0.195 4.195 10 N -0.295 5.295 11 C -0.045 4.045 12 H 0.115 0.885 13 C -0.170 4.170 14 C 0.018 3.982 15 H 0.123 0.877 16 N -0.375 5.375 17 C 0.320 3.680 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 C -0.223 4.223 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.181 0.819 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.101 -15.863 -26.799 32.178 hybrid contribution -0.073 -2.651 1.789 3.199 sum -8.174 -18.513 -25.010 32.172 Atomic orbital electron populations 1.24022 0.95798 1.02589 0.97651 1.22992 0.96260 0.98036 1.02515 1.20423 0.91794 0.95682 0.89808 1.45960 1.40948 1.20171 1.30934 1.20752 0.80481 0.82237 0.86616 1.90716 1.67713 1.35316 1.46845 1.21506 0.93711 0.93845 0.95694 0.90982 1.21772 0.98914 0.94897 1.03872 1.60444 1.43355 1.04302 1.21427 1.23215 0.96471 0.96417 0.88411 0.88483 1.23424 0.97450 0.98026 0.98075 1.21604 0.94591 0.99573 0.82421 0.87722 1.45714 1.71204 1.14456 1.06107 1.20335 0.76280 0.86243 0.85138 1.90702 1.45347 1.16757 1.86068 1.23533 1.04403 1.05912 0.96565 1.85418 1.89069 1.12367 0.96451 1.22871 1.53059 0.99211 0.93319 0.90930 1.24994 0.94806 0.95169 0.98596 1.70022 1.44953 1.10523 1.24750 0.86167 0.78693 0.79706 0.80923 1.20253 1.20748 1.19723 1.24184 0.98104 0.98883 1.01093 0.87743 0.88094 0.86600 0.90999 0.90521 0.76300 0.91291 0.91206 0.92256 0.81867 0.88337 0.90638 0.76884 0.89164 0.89270 0.92173 0.90977 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 14.32 29.01 0.42 -0.15 16 2 C -0.18 -0.68 9.63 -36.03 -0.35 -1.02 16 3 C 0.15 0.83 6.11 -5.20 -0.03 0.80 16 4 N -0.73 -4.13 5.44 -61.47 -0.33 -4.47 16 5 C 0.51 4.35 7.18 -10.99 -0.08 4.27 16 6 O -0.53 -6.56 15.64 5.56 0.09 -6.48 16 7 C 0.07 0.46 2.88 -68.86 -0.20 0.26 16 8 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 9 C -0.14 -0.74 9.30 37.16 0.35 -0.39 16 10 N -0.66 -5.66 6.30 -100.09 -0.63 -6.29 16 11 C 0.07 0.53 3.75 -66.90 -0.25 0.28 16 12 H 0.10 0.71 7.49 -51.93 -0.39 0.32 16 13 C -0.13 -1.16 7.63 -25.92 -0.20 -1.36 16 14 C 0.13 1.45 4.32 -67.12 -0.29 1.16 16 15 H 0.10 1.45 7.46 -51.93 -0.39 1.06 16 16 N -0.72 -9.33 5.26 -53.02 -0.28 -9.60 16 17 C 0.53 9.82 7.85 -10.99 -0.09 9.74 16 18 O -0.52 -11.68 15.46 5.56 0.09 -11.59 16 19 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 25 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.18 -1.82 7.50 -25.91 -0.19 -2.02 16 30 H 0.10 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.10 0.35 7.84 -52.48 -0.41 -0.06 16 32 H 0.12 0.31 8.06 -52.49 -0.42 -0.12 16 33 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 1.29 7.88 -40.82 -0.32 0.97 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.37 7.74 -51.93 -0.40 -0.03 16 38 H 0.06 0.20 7.56 -51.93 -0.39 -0.20 16 39 H 0.36 3.54 6.92 -39.29 -0.27 3.27 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 3.93 8.70 -40.82 -0.36 3.57 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.88 7.83 -51.93 -0.41 0.48 16 LS Contribution 408.68 15.07 6.16 6.16 Total: -1.00 -36.15 408.68 -9.41 -45.56 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.50 Total: 3.82 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.49 Total: -4.18 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.51 Total: -45.74 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.15 -9.41 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.578 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds