Wall clock time and date at job start Wed Apr 1 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00411 * 2 1 4 4 N 1.46496 * 109.47445 * 124.99690 * 3 2 1 5 5 C 1.34768 * 120.00034 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00160 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99885 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47075 * 299.99646 * 7 5 4 9 9 C 1.53002 * 109.47189 * 60.00349 * 7 5 4 10 10 N 1.46904 * 109.47140 * 179.97438 * 7 5 4 11 11 C 1.46900 * 111.00225 * 155.00062 * 10 7 5 12 12 H 1.08997 * 112.84586 * 23.80406 * 11 10 7 13 13 C 1.53782 * 113.61721 * 155.00315 * 11 10 7 14 14 C 1.53773 * 87.08120 * 140.06507 * 13 11 10 15 15 H 1.09002 * 113.61283 * 219.93374 * 14 13 11 16 16 N 1.46499 * 113.61710 * 89.11601 * 14 13 11 17 17 C 1.34778 * 120.00278 * 154.99418 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99873 * 25 23 21 29 29 C 1.53783 * 87.08561 * 334.56491 * 14 13 11 30 30 H 1.07991 * 120.00362 * 179.97438 * 1 2 3 31 31 H 1.08009 * 119.99638 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99780 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46872 * 4.99369 * 3 2 1 34 34 H 1.09007 * 109.46520 * 244.99601 * 3 2 1 35 35 H 0.96997 * 119.99845 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.47209 * 59.99894 * 9 7 5 37 37 H 1.09001 * 109.46893 * 180.02562 * 9 7 5 38 38 H 1.08995 * 109.46642 * 299.99598 * 9 7 5 39 39 H 1.00907 * 111.00114 * 31.04550 * 10 7 5 40 40 H 1.08999 * 113.61098 * 25.51416 * 13 11 10 41 41 H 1.08998 * 113.60816 * 254.61810 * 13 11 10 42 42 H 0.97000 * 119.99972 * 334.99774 * 16 14 13 43 43 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 44 44 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 45 45 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 46 46 H 1.09000 * 113.61407 * 139.97738 * 29 14 13 47 47 H 1.08998 * 113.61415 * 270.88573 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7791 2.4085 1.3328 6 8 3.7153 3.3554 0.5776 7 6 4.7355 2.4363 2.4970 8 1 4.1773 2.3397 3.4282 9 6 5.7246 1.2756 2.3724 10 7 5.4711 3.7079 2.4962 11 6 5.9403 4.0456 3.8467 12 1 6.0409 3.1719 4.4906 13 6 7.1730 4.9649 3.8587 14 6 6.5187 5.6960 5.0428 15 1 6.6378 6.7789 5.0071 16 7 6.8664 5.1281 6.3477 17 6 6.8140 5.8975 7.4531 18 8 6.4786 7.0598 7.3675 19 6 7.1723 5.3135 8.7953 20 16 7.0042 6.5862 10.0713 21 6 7.4696 5.6565 11.4938 22 1 7.7443 4.6168 11.3934 23 6 7.4891 6.2619 12.7427 24 7 7.1547 7.5292 12.8650 25 14 7.9900 5.2784 14.2498 26 1 9.4575 5.3894 14.4481 27 1 7.2873 5.8112 15.4446 28 1 7.6232 3.8526 14.0547 29 6 5.1672 5.2048 4.4976 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6215 1.4024 -0.9314 35 1 3.0446 0.5748 1.7356 36 1 6.2828 1.3724 1.4412 37 1 6.4161 1.2955 3.2147 38 1 5.1792 0.3320 2.3728 39 1 4.9071 4.4517 2.1129 40 1 7.2675 5.5802 2.9639 41 1 8.0982 4.4512 4.1200 42 1 7.1344 4.1984 6.4162 43 1 8.2013 4.9549 8.7726 44 1 6.5031 4.4831 9.0205 45 1 7.1680 7.9521 13.7379 46 1 4.4732 4.8848 5.2747 47 1 4.7134 5.8857 3.7775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713154528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:04 Heat of formation + Delta-G solvation = -60.216239 kcal Electronic energy + Delta-G solvation = -26033.883367 eV Core-core repulsion = 22149.803802 eV Total energy + Delta-G solvation = -3884.079565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43407 -40.86409 -39.39947 -36.93231 -36.08558 -34.57985 -34.23701 -33.59164 -31.00148 -29.90057 -27.66365 -27.41190 -26.65029 -25.32399 -23.52303 -22.17354 -21.54599 -20.73995 -20.43070 -19.82243 -18.26720 -17.99339 -17.55250 -17.09341 -16.86996 -16.71457 -16.49463 -16.42389 -16.09223 -15.83021 -15.27247 -14.90922 -14.80492 -14.58641 -14.44994 -14.13782 -13.98160 -13.66224 -13.48144 -13.35367 -13.20260 -13.15706 -12.96355 -12.88119 -12.70470 -12.57803 -12.45742 -12.07228 -11.74037 -11.72322 -11.38681 -11.13521 -10.99690 -10.95767 -10.52540 -10.26362 -10.09783 -10.07038 -9.38989 -8.66171 -8.33908 -6.12129 1.14859 1.27465 1.43369 1.47892 1.53604 1.58032 1.60118 2.24689 2.26043 2.29317 3.00410 3.11682 3.32769 3.54971 3.65653 3.70497 3.84511 3.89464 3.98836 4.05166 4.13491 4.17196 4.28953 4.32375 4.51745 4.53451 4.54813 4.71817 4.77641 4.83241 4.86692 4.93462 4.95757 4.98648 5.05330 5.14492 5.30080 5.34768 5.42688 5.57469 5.62813 5.75361 6.02526 6.20582 6.28216 6.50572 6.53057 7.07436 7.15890 7.26701 8.75315 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.001629 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.798766 B =17179.138113 C =17910.821100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.509 3.491 6 O -0.577 6.577 7 C 0.067 3.933 8 H 0.088 0.912 9 C -0.132 4.132 10 N -0.668 5.668 11 C 0.081 3.919 12 H 0.117 0.883 13 C -0.117 4.117 14 C 0.112 3.888 15 H 0.077 0.923 16 N -0.693 5.693 17 C 0.535 3.465 18 O -0.567 6.567 19 C -0.128 4.128 20 S -0.155 6.155 21 C -0.546 4.546 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.257 1.257 29 C -0.179 4.179 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.417 0.583 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.350 0.650 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.417 0.583 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 -22.351 -26.112 35.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.456 6.456 7 C -0.046 4.046 8 H 0.106 0.894 9 C -0.190 4.190 10 N -0.301 5.301 11 C -0.029 4.029 12 H 0.135 0.865 13 C -0.156 4.156 14 C 0.005 3.995 15 H 0.095 0.905 16 N -0.346 5.346 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.280 4.280 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 C -0.219 4.219 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.172 0.828 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.645 -19.923 -26.930 34.360 hybrid contribution -0.275 -1.455 1.653 2.219 sum -7.920 -21.378 -25.277 34.039 Atomic orbital electron populations 1.24180 0.95837 1.03160 0.96863 1.22954 0.96262 0.97477 1.03140 1.20408 0.91545 0.96532 0.89362 1.45879 1.39888 1.19892 1.30863 1.21104 0.80678 0.82076 0.86569 1.90697 1.69252 1.37097 1.48581 1.21620 0.93889 0.93607 0.95512 0.89430 1.21778 0.98703 0.95154 1.03389 1.60470 1.43683 1.04728 1.21220 1.23149 0.95078 0.96265 0.88430 0.86515 1.23343 0.98233 0.97653 0.96349 1.21748 0.96815 0.98496 0.82403 0.90494 1.45388 1.69232 1.14826 1.05162 1.20117 0.76082 0.85797 0.85855 1.90694 1.48077 1.18996 1.86704 1.23366 1.06330 1.03573 0.94683 1.85631 1.89589 1.17486 1.00036 1.23218 1.52904 0.99626 0.93645 0.89750 1.26139 0.94483 0.96257 1.02295 1.70193 1.46333 1.12649 1.25672 0.84945 0.78468 0.78463 0.76046 1.19332 1.20412 1.18060 1.24166 0.97076 0.99822 1.00869 0.86263 0.88517 0.84966 0.92355 0.91570 0.74579 0.92734 0.90446 0.89855 0.82845 0.88218 0.89235 0.74520 0.86990 0.87018 0.92034 0.91819 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 14.32 67.78 0.97 0.09 16 2 C -0.18 -1.06 9.63 25.65 0.25 -0.81 16 3 C 0.14 1.56 6.11 85.63 0.52 2.08 16 4 N -0.71 -7.07 5.44 -466.80 -2.54 -9.60 16 5 C 0.51 8.14 7.18 87.66 0.63 8.77 16 6 O -0.58 -14.46 15.64 -3.03 -0.05 -14.51 16 7 C 0.07 0.78 2.88 44.17 0.13 0.91 16 8 H 0.09 0.79 7.84 -2.39 -0.02 0.77 16 9 C -0.13 -1.03 9.30 71.98 0.67 -0.36 16 10 N -0.67 -10.31 6.30 -470.58 -2.97 -13.28 16 11 C 0.08 1.13 3.75 45.44 0.17 1.30 16 12 H 0.12 1.22 7.49 -2.39 -0.02 1.20 16 13 C -0.12 -1.83 7.63 31.12 0.24 -1.59 16 14 C 0.11 2.49 4.32 45.52 0.20 2.69 16 15 H 0.08 2.20 7.46 -2.39 -0.02 2.18 16 16 N -0.69 -16.64 5.26 -440.05 -2.32 -18.96 16 17 C 0.54 19.44 7.85 87.66 0.69 20.12 16 18 O -0.57 -26.45 15.46 -3.02 -0.05 -26.50 16 19 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 20 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 21 C -0.55 -30.93 9.50 67.96 0.65 -30.28 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 25 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 29 C -0.18 -3.40 7.50 31.12 0.23 -3.16 16 30 H 0.12 0.31 8.06 -2.92 -0.02 0.29 16 31 H 0.10 0.60 7.84 -2.91 -0.02 0.57 16 32 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.42 1.61 7.88 -92.71 -0.73 0.87 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.52 7.74 -2.39 -0.02 0.50 16 38 H 0.08 0.24 7.56 -2.39 -0.02 0.22 16 39 H 0.35 6.71 6.92 -89.69 -0.62 6.09 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.42 6.80 8.70 -92.71 -0.81 6.00 16 43 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.74 7.83 -2.39 -0.02 1.73 16 Total: -1.00 -82.41 408.68 -1.69 -84.09 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -1.16 Total: 22.54 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.24 Total: -3.56 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -7.54 Total: -97.57 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.09 Total: -41.01 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -82.41 -1.69 -84.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.876 kcal (2) G-P(sol) polarization free energy of solvation -82.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds