Wall clock time and date at job start Wed Apr 1 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.46753 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00271 * 3 2 1 5 5 C 1.34776 * 119.99419 * 90.00701 * 3 2 1 6 6 O 1.21281 * 120.00144 * 359.97438 * 5 3 2 7 7 C 1.50704 * 119.99956 * 179.97438 * 5 3 2 8 8 N 1.46893 * 109.47330 * 179.97438 * 7 5 3 9 9 C 1.47809 * 110.72574 * 183.82143 * 8 7 5 10 10 C 1.56012 * 105.10776 * 122.75726 * 9 8 7 11 11 H 1.08998 * 116.85718 * 159.12256 * 10 9 8 12 12 C 1.57396 * 99.76276 * 32.58932 * 10 9 8 13 13 C 1.49707 * 111.00044 * 301.42796 * 8 7 5 14 14 H 1.08998 * 116.79829 * 75.74975 * 13 8 7 15 15 C 1.56025 * 104.08380 * 306.12657 * 13 8 7 16 16 N 1.47861 * 105.11103 * 288.80036 * 15 13 8 17 17 C 1.34776 * 126.92611 * 181.89840 * 16 15 13 18 18 O 1.21289 * 119.99928 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00222 * 0.02801 * 17 16 15 20 20 S 1.80998 * 109.47285 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99874 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99926 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99808 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00257 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47269 * 89.99861 * 25 23 21 27 27 H 1.48492 * 109.47145 * 210.00165 * 25 23 21 28 28 H 1.48507 * 109.46985 * 330.00061 * 25 23 21 29 29 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47178 * 299.99214 * 1 2 3 31 31 H 1.09004 * 109.47445 * 59.99394 * 1 2 3 32 32 H 1.09001 * 109.46753 * 240.01106 * 2 1 3 33 33 H 1.08992 * 109.47454 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47163 * 269.99951 * 4 3 2 35 35 H 1.08999 * 109.47246 * 29.99941 * 4 3 2 36 36 H 1.09001 * 109.46914 * 150.00697 * 4 3 2 37 37 H 1.09001 * 109.46962 * 59.99489 * 7 5 3 38 38 H 1.09005 * 109.46972 * 300.00144 * 7 5 3 39 39 H 1.09002 * 110.43003 * 3.78250 * 9 8 7 40 40 H 1.08994 * 110.26401 * 241.64496 * 9 8 7 41 41 H 1.09001 * 112.51716 * 191.80341 * 12 10 9 42 42 H 1.08998 * 112.30678 * 64.29835 * 12 10 9 43 43 H 1.09002 * 110.30973 * 169.89517 * 15 13 8 44 44 H 1.08991 * 110.31290 * 47.71170 * 15 13 8 45 45 H 1.08995 * 109.47030 * 59.99516 * 19 17 16 46 46 H 1.09010 * 109.46995 * 299.99987 * 19 17 16 47 47 H 0.97001 * 119.99723 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 2.2429 2.0165 1.1673 6 8 2.0405 1.4448 2.2175 7 6 2.7457 3.4372 1.1674 8 7 2.9084 3.8990 2.5523 9 6 3.3136 5.3200 2.5858 10 6 2.2189 6.0351 3.4370 11 1 2.4881 6.9937 3.8803 12 6 1.8580 4.8744 4.4370 13 6 1.6141 3.8178 3.3004 14 1 1.2917 2.8264 3.6185 15 6 0.6114 4.6179 2.4122 16 7 1.0136 6.0335 2.5563 17 6 0.4159 7.1057 1.9998 18 8 0.8547 8.2180 2.2029 19 6 -0.7975 6.9225 1.1252 20 16 -1.3634 8.5364 0.5326 21 6 -2.7497 8.0385 -0.4343 22 1 -3.0072 6.9925 -0.5105 23 6 -3.5109 8.9908 -1.0980 24 7 -4.5463 8.6188 -1.8207 25 14 -3.0660 10.8001 -0.9656 26 1 -2.1207 11.1583 -2.0534 27 1 -4.2962 11.6226 -1.0881 28 1 -2.4272 11.0578 0.3501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2918 1.9008 -1.5834 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1412 -1.1382 37 1 2.0281 4.0766 0.6534 38 1 3.7060 3.4828 0.6536 39 1 3.3381 5.7325 1.5771 40 1 4.2894 5.4233 3.0602 41 1 0.9546 5.0830 5.0100 42 1 2.6967 4.6061 5.0794 43 1 -0.4081 4.4758 2.7706 44 1 0.6947 4.3048 1.3716 45 1 -1.5919 6.4474 1.7008 46 1 -0.5398 6.2930 0.2733 47 1 -5.0784 9.2843 -2.2842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714984485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:03 Heat of formation + Delta-G solvation = -11.522333 kcal Electronic energy + Delta-G solvation = -28576.243145 eV Core-core repulsion = 24694.275106 eV Total energy + Delta-G solvation = -3881.968039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60434 -39.88093 -38.26013 -36.11709 -34.17457 -32.48174 -32.23042 -31.12970 -29.98409 -28.94617 -27.19337 -26.59110 -25.66627 -24.99729 -23.26690 -21.64464 -20.81688 -19.47150 -18.85855 -17.81463 -17.46140 -16.95033 -16.79302 -16.70115 -15.64776 -15.55065 -15.12634 -14.98591 -14.60008 -14.37290 -14.05194 -13.70933 -13.52795 -13.37611 -13.16258 -13.05215 -12.95705 -12.82581 -12.67295 -12.42648 -12.23135 -12.13693 -12.07046 -11.91643 -11.69158 -11.45870 -11.33259 -11.29993 -11.25144 -11.04412 -10.64114 -9.89778 -9.88784 -9.61775 -9.04367 -9.03159 -8.83474 -8.54984 -8.42083 -6.96958 -6.32974 -4.05219 2.34486 2.57150 2.59156 2.86611 3.10742 3.29568 3.47319 3.54114 3.56855 4.08683 4.16862 4.28169 4.30177 4.53301 4.61356 4.65762 4.74490 4.78155 4.84149 4.86373 4.91408 5.05971 5.06579 5.10774 5.15364 5.21913 5.25506 5.32116 5.41040 5.43298 5.50950 5.61301 5.63348 5.66103 5.69619 5.73153 5.85679 5.92404 5.94752 6.15460 6.18914 6.42462 6.55856 7.02990 7.53470 7.90029 7.90538 8.36422 8.37226 9.13133 10.76254 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003289 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.012363 B = 8510.060563 C =10182.594305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.620 5.620 4 C 0.074 3.926 5 C 0.518 3.482 6 O -0.523 6.523 7 C 0.018 3.982 8 N -0.497 5.497 9 C 0.027 3.973 10 C 0.113 3.887 11 H 0.129 0.871 12 C -0.136 4.136 13 C 0.061 3.939 14 H 0.150 0.850 15 C 0.061 3.939 16 N -0.627 5.627 17 C 0.549 3.451 18 O -0.516 6.516 19 C -0.117 4.117 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.087 0.913 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 -17.084 5.372 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.355 5.355 4 C -0.069 4.069 5 C 0.306 3.694 6 O -0.398 6.398 7 C -0.113 4.113 8 N -0.221 5.221 9 C -0.102 4.102 10 C 0.009 3.991 11 H 0.147 0.853 12 C -0.174 4.174 13 C -0.047 4.047 14 H 0.167 0.833 15 C -0.063 4.063 16 N -0.365 5.365 17 C 0.338 3.662 18 O -0.391 6.391 19 C -0.267 4.267 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.105 0.895 23 C -0.112 4.112 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.949 -15.935 6.271 24.094 hybrid contribution -1.310 -0.066 -1.224 1.794 sum 15.639 -16.001 5.047 22.937 Atomic orbital electron populations 1.22138 0.95642 1.02341 1.02624 1.21424 0.94573 0.81916 1.03089 1.47924 1.66683 1.14614 1.06317 1.21866 1.01597 0.97958 0.85505 1.20464 0.77305 0.88334 0.83333 1.90647 1.51113 1.67436 1.30620 1.22425 1.02665 0.93459 0.92778 1.64760 1.28403 1.18315 1.10598 1.23649 0.99006 0.86913 1.00633 1.24062 0.85228 0.99447 0.90361 0.85329 1.24046 1.02857 0.94049 0.96478 1.24902 0.87188 0.99526 0.93076 0.83284 1.23272 1.00427 0.81672 1.00967 1.49320 1.30469 1.06088 1.50673 1.19991 0.83855 0.83003 0.79358 1.90708 1.64625 1.23328 1.60416 1.23245 0.97441 1.05073 1.00987 1.84785 1.37283 1.05768 1.63549 1.22298 1.13087 0.97818 1.33747 0.89473 1.24703 0.93701 0.99323 0.93470 1.69938 1.16786 1.34934 1.29978 0.86741 0.79079 0.84537 0.81547 1.19182 1.19870 1.15904 0.91538 0.92093 0.92433 0.90628 0.89799 0.92250 0.90594 0.90849 0.90707 0.87705 0.91679 0.88886 0.89558 0.88661 0.90614 0.91078 0.88667 0.89037 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.11 0.84 6.13 -4.04 -0.02 0.81 16 3 N -0.62 -5.13 2.87 -181.57 -0.52 -5.65 16 4 C 0.07 0.43 10.24 59.84 0.61 1.04 16 5 C 0.52 5.35 7.33 -10.98 -0.08 5.27 16 6 O -0.52 -6.84 13.61 5.56 0.08 -6.76 16 7 C 0.02 0.16 3.18 -4.98 -0.02 0.15 16 8 N -0.50 -5.10 5.16 -218.58 -1.13 -6.23 16 9 C 0.03 0.27 6.26 -1.71 -0.01 0.26 16 10 C 0.11 1.28 5.24 -62.38 -0.33 0.96 16 11 H 0.13 1.51 8.06 -51.93 -0.42 1.09 16 12 C -0.14 -1.31 6.83 -22.12 -0.15 -1.46 16 13 C 0.06 0.64 4.15 -62.31 -0.26 0.38 16 14 H 0.15 1.69 6.42 -51.93 -0.33 1.35 16 15 C 0.06 0.71 5.62 -1.68 -0.01 0.70 16 16 N -0.63 -8.74 2.95 -156.60 -0.46 -9.21 16 17 C 0.55 10.10 7.91 -10.99 -0.09 10.01 16 18 O -0.52 -11.26 16.21 5.55 0.09 -11.17 16 19 C -0.12 -2.32 5.44 36.00 0.20 -2.13 16 20 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 21 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 22 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 25 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.08 0.72 7.42 -51.93 -0.39 0.34 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 37 H 0.08 0.72 4.90 -51.93 -0.25 0.46 16 38 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 39 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.82 5.21 -51.93 -0.27 0.55 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -35.05 384.16 -9.10 -44.16 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.46 Total: 0.16 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.44 Total: 3.13 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -1.33 Total: -46.69 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.17 Total: -17.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.05 -9.10 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714984485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.634 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds