Wall clock time and date at job start Wed Apr 1 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.46753 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00271 * 3 2 1 5 5 C 1.34776 * 119.99419 * 90.00701 * 3 2 1 6 6 O 1.21281 * 120.00144 * 359.97438 * 5 3 2 7 7 C 1.50704 * 119.99956 * 179.97438 * 5 3 2 8 8 N 1.46893 * 109.47330 * 179.97438 * 7 5 3 9 9 C 1.47809 * 110.72574 * 183.82143 * 8 7 5 10 10 C 1.56012 * 105.10776 * 122.75726 * 9 8 7 11 11 H 1.08998 * 116.85718 * 159.12256 * 10 9 8 12 12 C 1.57396 * 99.76276 * 32.58932 * 10 9 8 13 13 C 1.49707 * 111.00044 * 301.42796 * 8 7 5 14 14 H 1.08998 * 116.79829 * 75.74975 * 13 8 7 15 15 C 1.56025 * 104.08380 * 306.12657 * 13 8 7 16 16 N 1.47861 * 105.11103 * 288.80036 * 15 13 8 17 17 C 1.34776 * 126.92611 * 181.89840 * 16 15 13 18 18 O 1.21289 * 119.99928 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00222 * 0.02801 * 17 16 15 20 20 S 1.80998 * 109.47285 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99874 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99926 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99808 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00257 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47269 * 89.99861 * 25 23 21 27 27 H 1.48492 * 109.47145 * 210.00165 * 25 23 21 28 28 H 1.48507 * 109.46985 * 330.00061 * 25 23 21 29 29 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47178 * 299.99214 * 1 2 3 31 31 H 1.09004 * 109.47445 * 59.99394 * 1 2 3 32 32 H 1.09001 * 109.46753 * 240.01106 * 2 1 3 33 33 H 1.08992 * 109.47454 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47163 * 269.99951 * 4 3 2 35 35 H 1.08999 * 109.47246 * 29.99941 * 4 3 2 36 36 H 1.09001 * 109.46914 * 150.00697 * 4 3 2 37 37 H 1.09001 * 109.46962 * 59.99489 * 7 5 3 38 38 H 1.09005 * 109.46972 * 300.00144 * 7 5 3 39 39 H 1.09002 * 110.43003 * 3.78250 * 9 8 7 40 40 H 1.08994 * 110.26401 * 241.64496 * 9 8 7 41 41 H 1.09001 * 112.51716 * 191.80341 * 12 10 9 42 42 H 1.08998 * 112.30678 * 64.29835 * 12 10 9 43 43 H 1.09002 * 110.30973 * 169.89517 * 15 13 8 44 44 H 1.08991 * 110.31290 * 47.71170 * 15 13 8 45 45 H 1.08995 * 109.47030 * 59.99516 * 19 17 16 46 46 H 1.09010 * 109.46995 * 299.99987 * 19 17 16 47 47 H 0.97001 * 119.99723 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 2.2429 2.0165 1.1673 6 8 2.0405 1.4448 2.2175 7 6 2.7457 3.4372 1.1674 8 7 2.9084 3.8990 2.5523 9 6 3.3136 5.3200 2.5858 10 6 2.2189 6.0351 3.4370 11 1 2.4881 6.9937 3.8803 12 6 1.8580 4.8744 4.4370 13 6 1.6141 3.8178 3.3004 14 1 1.2917 2.8264 3.6185 15 6 0.6114 4.6179 2.4122 16 7 1.0136 6.0335 2.5563 17 6 0.4159 7.1057 1.9998 18 8 0.8547 8.2180 2.2029 19 6 -0.7975 6.9225 1.1252 20 16 -1.3634 8.5364 0.5326 21 6 -2.7497 8.0385 -0.4343 22 1 -3.0072 6.9925 -0.5105 23 6 -3.5109 8.9908 -1.0980 24 7 -4.5463 8.6188 -1.8207 25 14 -3.0660 10.8001 -0.9656 26 1 -2.1207 11.1583 -2.0534 27 1 -4.2962 11.6226 -1.0881 28 1 -2.4272 11.0578 0.3501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2918 1.9008 -1.5834 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1412 -1.1382 37 1 2.0281 4.0766 0.6534 38 1 3.7060 3.4828 0.6536 39 1 3.3381 5.7325 1.5771 40 1 4.2894 5.4233 3.0602 41 1 0.9546 5.0830 5.0100 42 1 2.6967 4.6061 5.0794 43 1 -0.4081 4.4758 2.7706 44 1 0.6947 4.3048 1.3716 45 1 -1.5919 6.4474 1.7008 46 1 -0.5398 6.2930 0.2733 47 1 -5.0784 9.2843 -2.2842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714984485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:03 Heat of formation + Delta-G solvation = -36.153973 kcal Electronic energy + Delta-G solvation = -28577.311253 eV Core-core repulsion = 24694.275106 eV Total energy + Delta-G solvation = -3883.036147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54034 -40.73952 -39.58774 -36.84377 -35.21192 -34.70695 -33.15162 -31.95735 -30.90730 -30.34062 -27.92410 -27.81995 -27.27922 -26.00098 -23.95311 -22.67129 -21.76284 -20.34717 -20.09745 -19.46797 -18.48123 -17.98696 -17.86703 -17.47347 -17.15376 -16.65217 -16.52417 -16.14312 -15.96650 -15.65025 -15.16484 -14.90182 -14.62993 -14.32847 -14.23355 -14.20558 -13.91155 -13.71240 -13.47764 -13.38306 -13.35513 -13.10592 -13.06143 -13.04009 -12.85600 -12.73866 -12.71108 -12.49320 -12.31740 -12.09132 -11.95129 -11.89456 -11.20041 -11.12394 -10.69443 -10.60193 -9.91589 -9.68628 -9.35238 -9.05503 -8.54798 -6.26936 0.89927 1.29236 1.40509 1.42111 1.49467 1.57942 1.89532 1.92806 2.22305 2.61851 2.77645 2.83544 3.22274 3.33902 3.46494 3.60880 3.68456 3.87673 3.96380 4.05923 4.15437 4.19442 4.25288 4.27768 4.29173 4.34984 4.40505 4.51737 4.53481 4.67234 4.69082 4.77212 4.81674 4.85664 4.91429 4.94038 4.98469 5.02733 5.15035 5.27974 5.55320 5.60418 5.67081 5.76579 6.07221 6.26217 6.35303 6.89939 6.95399 7.16244 8.57722 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003289 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.012363 B = 8510.060563 C =10182.594305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.619 5.619 4 C 0.069 3.931 5 C 0.513 3.487 6 O -0.557 6.557 7 C 0.020 3.980 8 N -0.500 5.500 9 C 0.035 3.965 10 C 0.104 3.896 11 H 0.127 0.873 12 C -0.123 4.123 13 C 0.068 3.932 14 H 0.145 0.855 15 C 0.057 3.943 16 N -0.616 5.616 17 C 0.553 3.447 18 O -0.556 6.556 19 C -0.103 4.103 20 S -0.166 6.166 21 C -0.532 4.532 22 H 0.060 0.940 23 C 0.049 3.951 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.260 1.260 27 H -0.258 1.258 28 H -0.237 1.237 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.947 -17.579 5.465 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.353 5.353 4 C -0.074 4.074 5 C 0.301 3.699 6 O -0.435 6.435 7 C -0.110 4.110 8 N -0.224 5.224 9 C -0.094 4.094 10 C 0.001 3.999 11 H 0.145 0.855 12 C -0.161 4.161 13 C -0.040 4.040 14 H 0.162 0.838 15 C -0.066 4.066 16 N -0.352 5.352 17 C 0.341 3.659 18 O -0.434 6.434 19 C -0.254 4.254 20 S 0.060 5.940 21 C -0.679 4.679 22 H 0.078 0.922 23 C -0.157 4.157 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.184 1.184 27 H -0.182 1.182 28 H -0.161 1.161 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.694 -16.483 6.347 25.718 hybrid contribution -1.806 -0.125 -1.246 2.198 sum 16.888 -16.607 5.100 24.229 Atomic orbital electron populations 1.22093 0.95883 1.02895 1.01395 1.21506 0.94311 0.81668 1.03668 1.48051 1.65667 1.14926 1.06656 1.22054 1.03022 0.97759 0.84528 1.20672 0.77106 0.88671 0.83448 1.90630 1.52802 1.68218 1.31854 1.22456 1.03527 0.92717 0.92348 1.64802 1.28036 1.18324 1.11236 1.23639 0.99273 0.86311 1.00147 1.24345 0.84536 1.00231 0.90781 0.85520 1.24025 1.03631 0.92474 0.96017 1.24801 0.86861 0.99140 0.93153 0.83785 1.23443 1.01038 0.80406 1.01731 1.49237 1.30546 1.05930 1.49490 1.19576 0.83464 0.83434 0.79460 1.90690 1.65708 1.24921 1.62117 1.23188 0.98621 1.01685 1.01907 1.84664 1.35929 1.10148 1.63229 1.22425 1.14411 0.96728 1.34345 0.92216 1.25541 0.93594 1.03440 0.93106 1.70014 1.17806 1.36623 1.30882 0.85883 0.79445 0.79688 0.81474 1.18427 1.18216 1.16127 0.90193 0.94529 0.92277 0.87998 0.91212 0.90459 0.89536 0.90923 0.90960 0.85843 0.92318 0.86762 0.89505 0.86757 0.90521 0.90722 0.87913 0.87746 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 71.98 0.74 -1.64 16 2 C 0.11 1.50 6.13 86.38 0.53 2.03 16 3 N -0.62 -9.32 2.87 -846.76 -2.43 -11.75 16 4 C 0.07 0.65 10.24 127.77 1.31 1.96 16 5 C 0.51 10.00 7.33 87.66 0.64 10.64 16 6 O -0.56 -14.26 13.61 -3.03 -0.04 -14.30 16 7 C 0.02 0.34 3.18 85.56 0.27 0.61 16 8 N -0.50 -9.24 5.16 -845.45 -4.36 -13.60 16 9 C 0.03 0.61 6.26 87.17 0.55 1.16 16 10 C 0.10 2.17 5.24 47.05 0.25 2.42 16 11 H 0.13 2.77 8.06 -2.39 -0.02 2.75 16 12 C -0.12 -2.11 6.83 33.58 0.23 -1.88 16 13 C 0.07 1.33 4.15 46.85 0.19 1.52 16 14 H 0.14 3.11 6.42 -2.39 -0.02 3.09 16 15 C 0.06 1.28 5.62 87.17 0.49 1.77 16 16 N -0.62 -16.41 2.95 -767.75 -2.26 -18.67 16 17 C 0.55 19.94 7.91 87.66 0.69 20.64 16 18 O -0.56 -24.06 16.21 -3.06 -0.05 -24.11 16 19 C -0.10 -4.06 5.44 71.23 0.39 -3.68 16 20 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 21 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 22 H 0.06 3.69 8.03 -2.91 -0.02 3.66 16 23 C 0.05 2.85 5.50 84.86 0.47 3.32 16 24 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 25 Si 0.91 44.61 27.74 68.60 1.90 46.51 16 26 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.07 1.17 7.42 -2.39 -0.02 1.15 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.65 8.07 -2.39 -0.02 0.63 16 36 H 0.07 0.71 6.44 -2.39 -0.02 0.70 16 37 H 0.07 1.26 4.90 -2.39 -0.01 1.25 16 38 H 0.12 1.59 8.11 -2.38 -0.02 1.57 16 39 H 0.06 1.13 7.60 -2.39 -0.02 1.12 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.64 5.21 -2.39 -0.01 1.63 16 45 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 46 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 47 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.95 384.16 0.37 -75.59 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.93 Total: 16.36 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 7.43 Total: 8.56 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -8.75 Total: -99.11 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.09 Total: -38.42 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -75.95 0.37 -75.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714984485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.433 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds