Wall clock time and date at job start Wed Apr 1 2020 01:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47032 * 2 1 4 4 C 1.34780 * 120.00247 * 270.00166 * 3 2 1 5 5 O 1.21275 * 120.00179 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99624 * 0.02562 * 4 3 2 7 7 S 1.81004 * 109.46963 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99990 * 179.97438 * 7 6 4 9 9 H 1.08003 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.38800 * 119.99955 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00077 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00033 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47147 * 90.00173 * 12 10 8 14 14 H 1.48498 * 109.47590 * 210.00374 * 12 10 8 15 15 H 1.48506 * 109.47483 * 330.00689 * 12 10 8 16 16 C 1.46505 * 119.99937 * 90.00039 * 3 2 1 17 17 H 1.08994 * 110.87562 * 2.39495 * 16 3 2 18 18 C 1.55135 * 110.98982 * 238.54607 * 16 3 2 19 19 C 1.54323 * 103.02047 * 206.21831 * 18 16 3 20 20 N 1.47443 * 107.22642 * 22.28368 * 19 18 16 21 21 C 1.46907 * 110.99632 * 123.26423 * 20 19 18 22 22 H 1.09001 * 110.53897 * 297.25409 * 21 20 19 23 23 C 1.54626 * 110.48931 * 59.86687 * 21 20 19 24 24 C 1.54487 * 101.76119 * 93.88235 * 23 21 20 25 25 N 1.46756 * 105.47255 * 25.41844 * 24 23 21 26 26 C 1.34415 * 111.30335 * 342.97792 * 25 24 23 27 27 O 1.21282 * 124.94478 * 180.44380 * 26 25 24 28 28 C 1.47839 * 108.57181 * 0.99137 * 20 19 18 29 29 H 1.09006 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47256 * 299.99775 * 1 2 3 31 31 H 1.08993 * 109.47322 * 60.00307 * 1 2 3 32 32 H 1.09002 * 109.46767 * 240.00263 * 2 1 3 33 33 H 1.08998 * 109.46998 * 120.00341 * 2 1 3 34 34 H 1.08994 * 109.47237 * 300.00007 * 6 4 3 35 35 H 1.08999 * 109.47155 * 59.99863 * 6 4 3 36 36 H 0.96999 * 120.00323 * 180.02562 * 11 10 8 37 37 H 1.09004 * 110.70880 * 87.83881 * 18 16 3 38 38 H 1.09007 * 110.70779 * 324.60000 * 18 16 3 39 39 H 1.09000 * 109.88944 * 262.88064 * 19 18 16 40 40 H 1.09000 * 109.88772 * 141.68758 * 19 18 16 41 41 H 1.08996 * 110.97243 * 335.76460 * 23 21 20 42 42 H 1.08997 * 110.96807 * 212.00097 * 23 21 20 43 43 H 1.09002 * 110.23989 * 144.41449 * 24 23 21 44 44 H 1.08993 * 110.24361 * 266.32776 * 24 23 21 45 45 H 0.97010 * 124.35052 * 163.01029 * 25 24 23 46 46 H 1.09001 * 110.37334 * 94.73362 * 28 20 19 47 47 H 1.09001 * 110.37386 * 217.07114 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1598 -1.1672 6 6 1.9912 1.3063 -2.4723 7 16 2.3841 2.4150 -3.8481 8 6 2.0106 1.3590 -5.2082 9 1 1.6554 0.3547 -5.0305 10 6 2.1728 1.8180 -6.5081 11 7 2.6062 3.0418 -6.7247 12 14 1.7776 0.6982 -7.9501 13 1 0.3527 0.8678 -8.3324 14 1 2.6447 1.0508 -9.1029 15 1 2.0210 -0.7142 -7.5613 16 6 2.2625 2.0718 1.2688 17 1 2.0736 1.4099 2.1139 18 6 1.4083 3.3627 1.3721 19 6 2.2330 4.2496 2.3287 20 7 3.6255 3.7673 2.2799 21 6 4.5437 4.8481 1.8968 22 1 4.3155 5.2060 0.8929 23 6 4.4681 6.0090 2.9154 24 6 5.6189 5.6544 3.8831 25 7 6.5579 4.8471 3.0955 26 6 5.9790 4.3768 1.9773 27 8 6.5273 3.6761 1.1531 28 6 3.7012 2.6434 1.3224 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6210 0.4187 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 2.7192 3.3627 -7.6330 37 1 0.4290 3.1438 1.7977 38 1 1.3082 3.8378 0.3962 39 1 1.8452 4.1609 3.3435 40 1 2.1887 5.2885 2.0019 41 1 3.5093 6.0113 3.4338 42 1 4.6490 6.9674 2.4287 43 1 6.1071 6.5623 4.2373 44 1 5.2386 5.0777 4.7261 45 1 7.4782 4.6746 3.3495 46 1 4.0037 3.0026 0.3387 47 1 4.3976 1.8855 1.6812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715037252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:26 Heat of formation + Delta-G solvation = -50.480725 kcal Electronic energy + Delta-G solvation = -28523.510550 eV Core-core repulsion = 24639.853149 eV Total energy + Delta-G solvation = -3883.657402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89976 -39.87851 -37.66282 -36.34785 -35.57894 -32.41831 -32.38817 -30.27281 -29.69128 -29.47739 -27.51486 -26.47412 -25.43962 -23.30951 -22.58099 -21.96222 -20.85062 -20.07428 -18.79153 -17.59406 -17.45728 -17.04641 -16.72701 -16.11199 -15.49697 -15.09425 -14.78645 -14.76097 -14.34528 -14.05095 -13.84294 -13.80510 -13.61514 -13.54966 -13.46878 -13.27242 -12.86296 -12.74708 -12.52226 -12.18289 -12.03040 -11.93150 -11.62795 -11.43819 -11.36400 -11.22136 -11.13225 -11.04614 -10.99272 -10.76793 -10.69625 -9.81532 -9.78690 -9.25986 -9.16468 -9.04436 -8.48865 -8.43825 -8.19507 -6.46888 -6.19441 -3.89466 2.45233 2.90821 3.05048 3.20448 3.23520 3.26618 3.31460 3.58889 4.01602 4.14663 4.22457 4.26420 4.56096 4.68583 4.72874 4.82102 4.95365 4.98786 5.09883 5.15571 5.21506 5.22683 5.26263 5.35238 5.39888 5.45306 5.55438 5.58678 5.59417 5.66608 5.71225 5.78490 5.88087 5.94382 6.03185 6.07739 6.15594 6.19229 6.25755 6.56520 6.70492 6.81948 6.88020 6.93647 7.57865 7.61838 8.18385 8.37299 8.58678 9.25878 10.87974 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002991 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.652835 B = 9358.333951 C =10569.983136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.613 5.613 4 C 0.536 3.464 5 O -0.510 6.510 6 C -0.151 4.151 7 S -0.061 6.061 8 C -0.534 4.534 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.146 3.854 17 H 0.097 0.903 18 C -0.156 4.156 19 C 0.048 3.952 20 N -0.506 5.506 21 C 0.043 3.957 22 H 0.086 0.914 23 C -0.131 4.131 24 C 0.110 3.890 25 N -0.731 5.731 26 C 0.531 3.469 27 O -0.521 6.521 28 C 0.024 3.976 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.408 0.592 46 H 0.090 0.910 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 1.249 25.346 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.348 5.348 4 C 0.324 3.676 5 O -0.384 6.384 6 C -0.302 4.302 7 S 0.166 5.834 8 C -0.682 4.682 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.041 3.959 17 H 0.115 0.885 18 C -0.195 4.195 19 C -0.080 4.080 20 N -0.232 5.232 21 C -0.070 4.070 22 H 0.104 0.896 23 C -0.169 4.169 24 C -0.014 4.014 25 N -0.388 5.388 26 C 0.316 3.684 27 O -0.394 6.394 28 C -0.104 4.104 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.247 0.753 46 H 0.108 0.892 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.084 2.558 25.212 25.342 hybrid contribution -0.622 -1.887 -1.517 2.500 sum -0.538 0.671 23.695 23.711 Atomic orbital electron populations 1.22222 0.95933 1.02135 1.02679 1.21568 0.94465 0.82310 1.03306 1.47913 1.67469 1.14262 1.05129 1.20288 0.76324 0.86511 0.84439 1.90626 1.43494 1.17528 1.86793 1.23600 1.04640 1.04579 0.97356 1.85375 1.86884 1.17823 0.93306 1.22855 1.51646 1.01503 0.92239 0.91002 1.24982 0.94686 0.95542 0.98355 1.70015 1.42960 1.15689 1.21613 0.86182 0.78361 0.80262 0.80779 1.20300 1.20763 1.19694 1.22033 0.94529 0.93629 0.85748 0.88527 1.23184 0.98448 0.96206 1.01712 1.22758 0.87221 0.98476 0.99536 1.63635 1.05170 1.06657 1.47770 1.22554 0.91800 0.92707 0.99899 0.89604 1.22763 0.99895 0.97465 0.96784 1.21962 0.90102 0.94964 0.94403 1.46134 1.14934 1.54008 1.23689 1.20631 0.88448 0.78708 0.80635 1.90799 1.69568 1.36770 1.42304 1.23507 0.96525 0.93121 0.97278 0.91631 0.92523 0.91945 0.89873 0.90601 0.89380 0.89326 0.92222 0.90963 0.88991 0.90288 0.91996 0.88516 0.89610 0.90633 0.90799 0.75337 0.89166 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.17 5.92 -4.04 -0.02 1.15 16 3 N -0.61 -8.71 2.56 -163.69 -0.42 -9.12 16 4 C 0.54 10.14 6.97 -10.98 -0.08 10.06 16 5 O -0.51 -11.21 11.90 5.56 0.07 -11.15 16 6 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 7 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 8 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 9 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 10 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 11 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 12 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.15 1.83 3.54 -65.79 -0.23 1.60 16 17 H 0.10 0.99 7.87 -51.93 -0.41 0.59 16 18 C -0.16 -1.88 6.31 -24.91 -0.16 -2.04 16 19 C 0.05 0.49 5.77 -2.83 -0.02 0.47 16 20 N -0.51 -6.08 5.04 -223.31 -1.13 -7.21 16 21 C 0.04 0.52 2.25 -67.72 -0.15 0.37 16 22 H 0.09 1.26 8.07 -51.93 -0.42 0.85 16 23 C -0.13 -0.99 6.39 -25.10 -0.16 -1.15 16 24 C 0.11 0.71 7.78 -3.12 -0.02 0.68 16 25 N -0.73 -6.96 6.24 -59.21 -0.37 -7.33 16 26 C 0.53 7.44 7.55 -10.86 -0.08 7.36 16 27 O -0.52 -9.83 17.53 5.56 0.10 -9.73 16 28 C 0.02 0.35 5.07 -2.30 -0.01 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 32 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 33 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.09 1.72 7.40 -51.92 -0.38 1.34 16 35 H 0.09 1.70 7.18 -51.92 -0.37 1.32 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.44 6.12 -51.92 -0.32 1.12 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.61 6.85 -51.93 -0.36 0.26 16 41 H 0.10 0.60 6.63 -51.93 -0.34 0.25 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.41 3.21 8.96 -40.82 -0.37 2.85 16 46 H 0.09 1.73 5.29 -51.93 -0.27 1.45 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -36.64 382.68 -9.97 -46.60 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.29 Total: 3.58 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.19 Total: 1.53 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -1.18 Total: -49.36 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.16 Total: -20.88 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.64 -9.97 -46.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.877 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds