Wall clock time and date at job start Wed Apr 1 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47032 * 2 1 4 4 C 1.34780 * 120.00247 * 270.00166 * 3 2 1 5 5 O 1.21275 * 120.00179 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99624 * 0.02562 * 4 3 2 7 7 S 1.81004 * 109.46963 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99990 * 179.97438 * 7 6 4 9 9 H 1.08003 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.38800 * 119.99955 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00077 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00033 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47147 * 90.00173 * 12 10 8 14 14 H 1.48498 * 109.47590 * 210.00374 * 12 10 8 15 15 H 1.48506 * 109.47483 * 330.00689 * 12 10 8 16 16 C 1.46505 * 119.99937 * 90.00039 * 3 2 1 17 17 H 1.08994 * 110.87562 * 2.39495 * 16 3 2 18 18 C 1.55135 * 110.98982 * 238.54607 * 16 3 2 19 19 C 1.54323 * 103.02047 * 206.21831 * 18 16 3 20 20 N 1.47443 * 107.22642 * 22.28368 * 19 18 16 21 21 C 1.46907 * 110.99632 * 123.26423 * 20 19 18 22 22 H 1.09001 * 110.53897 * 297.25409 * 21 20 19 23 23 C 1.54626 * 110.48931 * 59.86687 * 21 20 19 24 24 C 1.54487 * 101.76119 * 93.88235 * 23 21 20 25 25 N 1.46756 * 105.47255 * 25.41844 * 24 23 21 26 26 C 1.34415 * 111.30335 * 342.97792 * 25 24 23 27 27 O 1.21282 * 124.94478 * 180.44380 * 26 25 24 28 28 C 1.47839 * 108.57181 * 0.99137 * 20 19 18 29 29 H 1.09006 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47256 * 299.99775 * 1 2 3 31 31 H 1.08993 * 109.47322 * 60.00307 * 1 2 3 32 32 H 1.09002 * 109.46767 * 240.00263 * 2 1 3 33 33 H 1.08998 * 109.46998 * 120.00341 * 2 1 3 34 34 H 1.08994 * 109.47237 * 300.00007 * 6 4 3 35 35 H 1.08999 * 109.47155 * 59.99863 * 6 4 3 36 36 H 0.96999 * 120.00323 * 180.02562 * 11 10 8 37 37 H 1.09004 * 110.70880 * 87.83881 * 18 16 3 38 38 H 1.09007 * 110.70779 * 324.60000 * 18 16 3 39 39 H 1.09000 * 109.88944 * 262.88064 * 19 18 16 40 40 H 1.09000 * 109.88772 * 141.68758 * 19 18 16 41 41 H 1.08996 * 110.97243 * 335.76460 * 23 21 20 42 42 H 1.08997 * 110.96807 * 212.00097 * 23 21 20 43 43 H 1.09002 * 110.23989 * 144.41449 * 24 23 21 44 44 H 1.08993 * 110.24361 * 266.32776 * 24 23 21 45 45 H 0.97010 * 124.35052 * 163.01029 * 25 24 23 46 46 H 1.09001 * 110.37334 * 94.73362 * 28 20 19 47 47 H 1.09001 * 110.37386 * 217.07114 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1598 -1.1672 6 6 1.9912 1.3063 -2.4723 7 16 2.3841 2.4150 -3.8481 8 6 2.0106 1.3590 -5.2082 9 1 1.6554 0.3547 -5.0305 10 6 2.1728 1.8180 -6.5081 11 7 2.6062 3.0418 -6.7247 12 14 1.7776 0.6982 -7.9501 13 1 0.3527 0.8678 -8.3324 14 1 2.6447 1.0508 -9.1029 15 1 2.0210 -0.7142 -7.5613 16 6 2.2625 2.0718 1.2688 17 1 2.0736 1.4099 2.1139 18 6 1.4083 3.3627 1.3721 19 6 2.2330 4.2496 2.3287 20 7 3.6255 3.7673 2.2799 21 6 4.5437 4.8481 1.8968 22 1 4.3155 5.2060 0.8929 23 6 4.4681 6.0090 2.9154 24 6 5.6189 5.6544 3.8831 25 7 6.5579 4.8471 3.0955 26 6 5.9790 4.3768 1.9773 27 8 6.5273 3.6761 1.1531 28 6 3.7012 2.6434 1.3224 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6210 0.4187 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 2.7192 3.3627 -7.6330 37 1 0.4290 3.1438 1.7977 38 1 1.3082 3.8378 0.3962 39 1 1.8452 4.1609 3.3435 40 1 2.1887 5.2885 2.0019 41 1 3.5093 6.0113 3.4338 42 1 4.6490 6.9674 2.4287 43 1 6.1071 6.5623 4.2373 44 1 5.2386 5.0777 4.7261 45 1 7.4782 4.6746 3.3495 46 1 4.0037 3.0026 0.3387 47 1 4.3976 1.8855 1.6812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715037252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:25 Heat of formation + Delta-G solvation = -79.885894 kcal Electronic energy + Delta-G solvation = -28524.785654 eV Core-core repulsion = 24639.853149 eV Total energy + Delta-G solvation = -3884.932505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94095 -41.08216 -38.82529 -37.41143 -36.76246 -34.61373 -33.35877 -31.21950 -31.01582 -30.51353 -28.61021 -27.71914 -27.36614 -24.34099 -23.34922 -23.08794 -21.74523 -21.06256 -20.36824 -19.33474 -18.44312 -18.06910 -18.00025 -17.25438 -16.90903 -16.58598 -16.48535 -15.90822 -15.72512 -15.15252 -14.94743 -14.83157 -14.76324 -14.63178 -14.57606 -14.37625 -14.28734 -14.16904 -13.64411 -13.26384 -13.20211 -13.00429 -12.91968 -12.76718 -12.62197 -12.48089 -12.40044 -12.34808 -12.13766 -12.06583 -11.75580 -11.67448 -11.16377 -10.91379 -10.61240 -10.29268 -10.09387 -9.69082 -9.49442 -8.69623 -8.37025 -6.15442 1.22692 1.37823 1.40065 1.43899 1.54286 1.56665 2.04134 2.25154 2.38421 2.96891 3.02175 3.23630 3.28191 3.50608 3.56244 3.74837 3.77954 4.00022 4.02664 4.14829 4.18146 4.30979 4.32310 4.36438 4.39897 4.44818 4.52539 4.58796 4.73657 4.79112 4.79404 4.86553 4.95784 4.98424 5.00074 5.05856 5.11521 5.23474 5.36969 5.38493 5.58502 5.76672 5.82116 5.94322 5.98271 6.16901 6.30418 7.03784 7.16434 7.21145 8.72343 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002991 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.652835 B = 9358.333951 C =10569.983136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.531 3.469 5 O -0.549 6.549 6 C -0.124 4.124 7 S -0.152 6.152 8 C -0.546 4.546 9 H 0.081 0.919 10 C 0.013 3.987 11 N -0.912 5.912 12 Si 1.000 3.000 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.258 1.258 16 C 0.147 3.853 17 H 0.138 0.862 18 C -0.153 4.153 19 C 0.049 3.951 20 N -0.493 5.493 21 C 0.037 3.963 22 H 0.044 0.956 23 C -0.121 4.121 24 C 0.109 3.891 25 N -0.715 5.715 26 C 0.518 3.482 27 O -0.587 6.587 28 C 0.027 3.973 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.417 0.583 46 H 0.038 0.962 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 -0.119 28.679 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.319 3.681 5 O -0.427 6.427 6 C -0.275 4.275 7 S 0.075 5.925 8 C -0.693 4.693 9 H 0.099 0.901 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.821 3.179 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.182 1.182 16 C 0.043 3.957 17 H 0.156 0.844 18 C -0.192 4.192 19 C -0.078 4.078 20 N -0.219 5.219 21 C -0.075 4.075 22 H 0.062 0.938 23 C -0.158 4.158 24 C -0.014 4.014 25 N -0.369 5.369 26 C 0.303 3.697 27 O -0.466 6.466 28 C -0.102 4.102 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.256 0.744 46 H 0.056 0.944 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.657 1.194 28.643 28.716 hybrid contribution -0.066 -1.449 -2.395 2.800 sum -1.723 -0.255 26.249 26.306 Atomic orbital electron populations 1.22166 0.94582 1.03481 1.02049 1.21915 0.95516 0.80252 1.04756 1.47911 1.65796 1.15372 1.04195 1.20039 0.76669 0.86080 0.85303 1.90633 1.45452 1.19257 1.87382 1.23412 1.05608 1.02946 0.95522 1.85558 1.87707 1.21932 0.97273 1.23179 1.51748 1.01736 0.92679 0.90082 1.26150 0.94113 0.97216 1.01702 1.70187 1.44182 1.17963 1.22465 0.84943 0.78520 0.78220 0.76227 1.19028 1.20272 1.18231 1.22305 0.93080 0.94638 0.85685 0.84442 1.23132 1.00153 0.95757 1.00175 1.22942 0.85662 0.98093 1.01108 1.63742 1.06276 1.05979 1.45862 1.22585 0.90985 0.94379 0.99560 0.93764 1.22839 1.01771 0.95591 0.95632 1.22289 0.89146 0.96136 0.93794 1.46174 1.15755 1.52672 1.22333 1.21042 0.89311 0.78260 0.81044 1.90751 1.70988 1.39972 1.44860 1.23298 0.97738 0.93960 0.95167 0.89279 0.91231 0.94462 0.90597 0.87094 0.88332 0.87681 0.91994 0.88001 0.93389 0.86266 0.91899 0.86176 0.88713 0.87156 0.88858 0.74355 0.94390 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 71.98 0.74 -2.06 16 2 C 0.10 1.91 5.92 86.38 0.51 2.42 16 3 N -0.60 -16.76 2.56 -790.20 -2.02 -18.78 16 4 C 0.53 21.07 6.97 87.66 0.61 21.68 16 5 O -0.55 -26.23 11.90 -3.01 -0.04 -26.27 16 6 C -0.12 -5.30 4.71 71.24 0.34 -4.96 16 7 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 8 C -0.55 -32.26 9.50 67.95 0.65 -31.61 16 9 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 10 C 0.01 0.75 5.49 84.86 0.47 1.22 16 11 N -0.91 -57.58 13.22 21.65 0.29 -57.29 16 12 Si 1.00 44.79 29.55 68.60 2.03 46.82 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 16 C 0.15 3.50 3.54 46.37 0.16 3.67 16 17 H 0.14 2.24 7.87 -2.39 -0.02 2.22 16 18 C -0.15 -3.49 6.31 31.78 0.20 -3.29 16 19 C 0.05 0.90 5.77 86.65 0.50 1.40 16 20 N -0.49 -11.57 5.04 -860.41 -4.34 -15.90 16 21 C 0.04 0.94 2.25 44.91 0.10 1.04 16 22 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 23 C -0.12 -1.56 6.39 31.65 0.20 -1.35 16 24 C 0.11 1.04 7.78 86.84 0.68 1.72 16 25 N -0.71 -12.91 6.24 -459.82 -2.87 -15.78 16 26 C 0.52 15.26 7.55 87.90 0.66 15.92 16 27 O -0.59 -24.21 17.53 -3.03 -0.05 -24.26 16 28 C 0.03 0.84 5.07 86.77 0.44 1.28 16 29 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.82 7.22 -2.39 -0.02 0.81 16 32 H 0.08 1.62 6.44 -2.39 -0.02 1.61 16 33 H 0.11 1.48 7.94 -2.39 -0.02 1.46 16 34 H 0.10 3.96 7.40 -2.40 -0.02 3.94 16 35 H 0.11 4.10 7.18 -2.40 -0.02 4.08 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.56 6.12 -2.38 -0.01 1.54 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.16 6.85 -2.39 -0.02 1.14 16 41 H 0.12 1.02 6.63 -2.39 -0.02 1.01 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 45 H 0.42 6.16 8.96 -92.70 -0.83 5.33 16 46 H 0.04 1.60 5.29 -2.39 -0.01 1.59 16 47 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -89.89 382.68 -1.75 -91.65 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.16 Total: 22.73 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.26 Total: 7.07 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -8.94 Total: -107.75 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.09 Total: -50.53 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -89.89 -1.75 -91.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.761 kcal (2) G-P(sol) polarization free energy of solvation -89.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds