Wall clock time and date at job start Wed Apr 1 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46958 * 2 1 4 4 C 1.34782 * 120.00139 * 275.65681 * 3 2 1 5 5 O 1.21278 * 120.00413 * 174.88719 * 4 3 2 6 6 C 1.50697 * 119.99551 * 354.88807 * 4 3 2 7 7 S 1.81004 * 109.46948 * 179.97438 * 6 4 3 8 8 C 1.76198 * 100.00256 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99968 * 0.02562 * 8 7 6 10 10 C 1.38793 * 120.00632 * 179.97438 * 8 7 6 11 11 N 1.31640 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00538 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47093 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47028 * 120.00072 * 12 10 8 15 15 H 1.48499 * 109.47364 * 240.00092 * 12 10 8 16 16 C 1.46501 * 120.00166 * 95.66154 * 3 2 1 17 17 H 1.09002 * 110.27616 * 176.73808 * 16 3 2 18 18 C 1.54594 * 110.30474 * 298.82281 * 16 3 2 19 19 C 1.55203 * 102.79984 * 96.98254 * 18 16 3 20 20 N 1.48531 * 103.23677 * 37.43097 * 19 18 16 21 21 C 1.46903 * 110.99895 * 200.25575 * 20 19 18 22 22 H 1.08998 * 110.43330 * 68.10094 * 21 20 19 23 23 C 1.54624 * 110.48465 * 305.55719 * 21 20 19 24 24 C 1.54482 * 101.76360 * 216.52262 * 23 21 20 25 25 N 1.46766 * 105.47417 * 25.41806 * 24 23 21 26 26 C 1.34657 * 111.33492 * 342.87172 * 25 24 23 27 27 O 1.21282 * 125.07603 * 180.53635 * 26 25 24 28 28 C 1.47898 * 105.82227 * 320.77451 * 20 19 18 29 29 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47163 * 299.97761 * 1 2 3 31 31 H 1.09003 * 109.46880 * 59.97602 * 1 2 3 32 32 H 1.08994 * 109.47518 * 240.00022 * 2 1 3 33 33 H 1.08999 * 109.47266 * 120.00014 * 2 1 3 34 34 H 1.09004 * 109.47649 * 299.99729 * 6 4 3 35 35 H 1.09003 * 109.47266 * 60.00120 * 6 4 3 36 36 H 0.96991 * 120.00025 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.72148 * 215.31253 * 18 16 3 38 38 H 1.08999 * 110.72630 * 338.60596 * 18 16 3 39 39 H 1.08996 * 110.68116 * 278.98600 * 19 18 16 40 40 H 1.09000 * 110.78263 * 155.92879 * 19 18 16 41 41 H 1.08998 * 110.97122 * 334.64192 * 23 21 20 42 42 H 1.08995 * 110.96708 * 98.37240 * 23 21 20 43 43 H 1.09005 * 110.24820 * 144.41549 * 24 23 21 44 44 H 1.08994 * 110.25089 * 266.41654 * 24 23 21 45 45 H 0.96997 * 124.35356 * 162.97752 * 25 24 23 46 46 H 1.09003 * 109.91172 * 265.97916 * 28 20 19 47 47 H 1.09001 * 110.08461 * 144.77662 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1344 2.0550 -1.1615 5 8 2.4494 3.2261 -1.1545 6 6 1.8728 1.3530 -2.4691 7 16 2.1082 2.5160 -3.8359 8 6 1.7495 1.4610 -5.2007 9 1 1.4820 0.4286 -5.0296 10 6 1.8095 1.9566 -6.4958 11 7 2.1349 3.2150 -6.7044 12 14 1.4285 0.8383 -7.9426 13 1 1.0921 -0.5193 -7.4438 14 1 0.2755 1.3860 -8.7015 15 1 2.6144 0.7592 -8.8329 16 6 2.3804 2.0302 1.2625 17 1 2.7756 3.0285 1.0744 18 6 1.1520 2.1069 2.1980 19 6 1.3422 0.8710 3.1173 20 7 2.8121 0.8251 3.3256 21 6 3.2410 -0.5119 3.7574 22 1 3.1114 -1.2325 2.9499 23 6 2.4510 -0.9553 5.0105 24 6 3.5285 -1.7246 5.8064 25 7 4.8127 -1.1641 5.3695 26 6 4.6827 -0.4833 4.2150 27 8 5.5870 0.0722 3.6279 28 6 3.4153 1.1803 2.0228 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5654 0.5184 -2.5785 35 1 0.8488 0.9795 -2.4825 36 1 2.1765 3.5615 -7.6093 37 1 1.1679 3.0280 2.7806 38 1 0.2269 2.0260 1.6273 39 1 0.9955 -0.0352 2.6207 40 1 0.8234 1.0110 4.0657 41 1 2.0934 -0.0921 5.5718 42 1 1.6240 -1.6110 4.7383 43 1 3.3923 -1.5661 6.8762 44 1 3.4824 -2.7882 5.5731 45 1 5.6485 -1.2715 5.8498 46 1 3.6391 0.2751 1.4582 47 1 4.3276 1.7564 2.1773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715037253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:28 Heat of formation + Delta-G solvation = -49.984912 kcal Electronic energy + Delta-G solvation = -28255.703054 eV Core-core repulsion = 24372.067152 eV Total energy + Delta-G solvation = -3883.635902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10319 -39.96884 -38.05798 -36.67855 -35.35843 -32.54741 -32.41679 -30.66465 -29.92556 -29.35127 -27.79328 -26.65835 -25.45972 -23.56896 -22.78370 -21.67762 -21.04182 -20.28796 -18.91616 -17.79475 -17.71837 -17.32963 -17.02018 -16.18284 -15.51885 -15.31135 -15.16242 -14.79777 -14.52864 -14.38756 -14.16312 -14.04829 -13.71110 -13.51666 -13.42488 -13.07143 -12.85350 -12.82058 -12.57806 -12.49635 -12.27652 -11.95687 -11.88247 -11.58239 -11.53611 -11.48023 -11.07304 -11.00483 -10.98524 -10.82207 -10.73647 -10.12184 -9.78510 -9.53029 -9.31959 -9.06282 -8.82162 -8.51784 -8.20096 -6.48397 -6.20556 -3.90857 2.21919 2.86893 2.92464 3.05126 3.21931 3.25730 3.31211 3.56239 3.69876 3.82682 3.99805 4.21107 4.33626 4.48905 4.53347 4.65184 4.76967 4.82848 4.90358 4.97462 4.99641 5.09157 5.14187 5.16799 5.20642 5.24646 5.29373 5.39241 5.44178 5.54253 5.59584 5.72316 5.75644 5.81251 5.93367 5.95798 6.07227 6.11449 6.24266 6.30509 6.41361 6.59266 6.61157 6.79367 7.55329 7.60911 7.91272 8.36405 8.57804 9.24756 10.86940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002346 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.658708 B =11931.878783 C =11995.290425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.614 5.614 4 C 0.536 3.464 5 O -0.513 6.513 6 C -0.150 4.150 7 S -0.062 6.062 8 C -0.533 4.533 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.131 3.869 17 H 0.112 0.888 18 C -0.135 4.135 19 C 0.033 3.967 20 N -0.497 5.497 21 C 0.039 3.961 22 H 0.081 0.919 23 C -0.128 4.128 24 C 0.104 3.896 25 N -0.735 5.735 26 C 0.531 3.469 27 O -0.516 6.516 28 C 0.032 3.968 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.411 0.589 46 H 0.055 0.945 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -13.407 27.973 31.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.350 5.350 4 C 0.324 3.676 5 O -0.387 6.387 6 C -0.300 4.300 7 S 0.165 5.835 8 C -0.681 4.681 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.027 3.973 17 H 0.130 0.870 18 C -0.174 4.174 19 C -0.094 4.094 20 N -0.222 5.222 21 C -0.073 4.073 22 H 0.098 0.902 23 C -0.166 4.166 24 C -0.021 4.021 25 N -0.392 5.392 26 C 0.315 3.685 27 O -0.389 6.389 28 C -0.096 4.096 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.250 0.750 46 H 0.074 0.926 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.097 -10.849 27.857 29.969 hybrid contribution -0.510 -2.970 -1.269 3.270 sum -2.608 -13.819 26.588 30.078 Atomic orbital electron populations 1.22384 0.95781 1.02231 1.03146 1.21482 0.94561 0.83018 1.02657 1.48052 1.67012 1.13993 1.05942 1.20339 0.75868 0.86801 0.84553 1.90692 1.45617 1.15741 1.86645 1.23587 1.04528 1.04726 0.97186 1.85419 1.90733 1.13624 0.93758 1.22886 1.54197 0.98690 0.92376 0.90958 1.24996 0.94737 0.95510 0.98394 1.70032 1.45017 1.13358 1.21835 0.86122 0.78136 0.80076 0.81187 1.19653 1.20577 1.20567 1.21843 0.94023 0.98347 0.83125 0.86967 1.23020 0.98775 0.98429 0.97164 1.23406 0.88102 0.98056 0.99878 1.64794 1.06225 1.22589 1.28592 1.22529 0.93933 0.92529 0.98347 0.90185 1.22754 0.97465 1.01266 0.95144 1.22038 0.82559 0.97690 0.99835 1.46167 1.11743 1.55557 1.25782 1.20616 0.90383 0.77016 0.80453 1.90777 1.45933 1.43861 1.58373 1.23298 0.98458 0.99937 0.87906 0.91719 0.91941 0.91617 0.90182 0.91237 0.89369 0.89259 0.92250 0.89729 0.89668 0.93108 0.89684 0.88655 0.89098 0.89995 0.90993 0.75032 0.92642 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.64 37.16 0.36 -1.34 16 2 C 0.11 1.15 4.70 -4.04 -0.02 1.13 16 3 N -0.61 -8.70 2.37 -164.57 -0.39 -9.09 16 4 C 0.54 10.31 7.64 -10.98 -0.08 10.23 16 5 O -0.51 -11.88 15.24 5.56 0.08 -11.80 16 6 C -0.15 -3.08 4.70 36.00 0.17 -2.91 16 7 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 8 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 9 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 10 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 12 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 C 0.13 1.69 3.42 -66.58 -0.23 1.46 16 17 H 0.11 1.73 6.99 -51.93 -0.36 1.37 16 18 C -0.14 -1.32 6.10 -24.73 -0.15 -1.47 16 19 C 0.03 0.25 5.06 -1.75 -0.01 0.24 16 20 N -0.50 -4.71 5.09 -222.34 -1.13 -5.84 16 21 C 0.04 0.31 2.44 -67.72 -0.16 0.14 16 22 H 0.08 0.60 7.83 -51.93 -0.41 0.20 16 23 C -0.13 -0.53 5.82 -25.10 -0.15 -0.67 16 24 C 0.10 0.34 7.78 -3.12 -0.02 0.32 16 25 N -0.74 -4.77 6.25 -59.14 -0.37 -5.14 16 26 C 0.53 5.49 8.05 -10.75 -0.09 5.41 16 27 O -0.52 -7.73 16.71 5.56 0.09 -7.63 16 28 C 0.03 0.39 4.92 -2.76 -0.01 0.38 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 5.26 -51.93 -0.27 0.27 16 31 H 0.06 0.77 6.88 -51.93 -0.36 0.41 16 32 H 0.08 0.91 6.66 -51.93 -0.35 0.56 16 33 H 0.07 0.62 5.22 -51.93 -0.27 0.35 16 34 H 0.09 1.71 7.57 -51.91 -0.39 1.31 16 35 H 0.09 1.69 6.74 -51.91 -0.35 1.34 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.85 5.89 -51.93 -0.31 0.55 16 39 H 0.05 0.34 5.88 -51.93 -0.31 0.04 16 40 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 41 H 0.09 0.42 7.66 -51.93 -0.40 0.02 16 42 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 44 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.41 2.15 8.96 -40.82 -0.37 1.78 16 46 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 47 H 0.10 1.37 7.74 -51.93 -0.40 0.97 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -37.05 375.53 -9.67 -46.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.91 Total: 0.21 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.20 Total: -0.06 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.16 Total: -45.67 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.05 -9.67 -46.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.266 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds