Wall clock time and date at job start Wed Apr 1 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46958 * 2 1 4 4 C 1.34782 * 120.00139 * 275.65681 * 3 2 1 5 5 O 1.21278 * 120.00413 * 174.88719 * 4 3 2 6 6 C 1.50697 * 119.99551 * 354.88807 * 4 3 2 7 7 S 1.81004 * 109.46948 * 179.97438 * 6 4 3 8 8 C 1.76198 * 100.00256 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99968 * 0.02562 * 8 7 6 10 10 C 1.38793 * 120.00632 * 179.97438 * 8 7 6 11 11 N 1.31640 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00538 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47093 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47028 * 120.00072 * 12 10 8 15 15 H 1.48499 * 109.47364 * 240.00092 * 12 10 8 16 16 C 1.46501 * 120.00166 * 95.66154 * 3 2 1 17 17 H 1.09002 * 110.27616 * 176.73808 * 16 3 2 18 18 C 1.54594 * 110.30474 * 298.82281 * 16 3 2 19 19 C 1.55203 * 102.79984 * 96.98254 * 18 16 3 20 20 N 1.48531 * 103.23677 * 37.43097 * 19 18 16 21 21 C 1.46903 * 110.99895 * 200.25575 * 20 19 18 22 22 H 1.08998 * 110.43330 * 68.10094 * 21 20 19 23 23 C 1.54624 * 110.48465 * 305.55719 * 21 20 19 24 24 C 1.54482 * 101.76360 * 216.52262 * 23 21 20 25 25 N 1.46766 * 105.47417 * 25.41806 * 24 23 21 26 26 C 1.34657 * 111.33492 * 342.87172 * 25 24 23 27 27 O 1.21282 * 125.07603 * 180.53635 * 26 25 24 28 28 C 1.47898 * 105.82227 * 320.77451 * 20 19 18 29 29 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47163 * 299.97761 * 1 2 3 31 31 H 1.09003 * 109.46880 * 59.97602 * 1 2 3 32 32 H 1.08994 * 109.47518 * 240.00022 * 2 1 3 33 33 H 1.08999 * 109.47266 * 120.00014 * 2 1 3 34 34 H 1.09004 * 109.47649 * 299.99729 * 6 4 3 35 35 H 1.09003 * 109.47266 * 60.00120 * 6 4 3 36 36 H 0.96991 * 120.00025 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.72148 * 215.31253 * 18 16 3 38 38 H 1.08999 * 110.72630 * 338.60596 * 18 16 3 39 39 H 1.08996 * 110.68116 * 278.98600 * 19 18 16 40 40 H 1.09000 * 110.78263 * 155.92879 * 19 18 16 41 41 H 1.08998 * 110.97122 * 334.64192 * 23 21 20 42 42 H 1.08995 * 110.96708 * 98.37240 * 23 21 20 43 43 H 1.09005 * 110.24820 * 144.41549 * 24 23 21 44 44 H 1.08994 * 110.25089 * 266.41654 * 24 23 21 45 45 H 0.96997 * 124.35356 * 162.97752 * 25 24 23 46 46 H 1.09003 * 109.91172 * 265.97916 * 28 20 19 47 47 H 1.09001 * 110.08461 * 144.77662 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1344 2.0550 -1.1615 5 8 2.4494 3.2261 -1.1545 6 6 1.8728 1.3530 -2.4691 7 16 2.1082 2.5160 -3.8359 8 6 1.7495 1.4610 -5.2007 9 1 1.4820 0.4286 -5.0296 10 6 1.8095 1.9566 -6.4958 11 7 2.1349 3.2150 -6.7044 12 14 1.4285 0.8383 -7.9426 13 1 1.0921 -0.5193 -7.4438 14 1 0.2755 1.3860 -8.7015 15 1 2.6144 0.7592 -8.8329 16 6 2.3804 2.0302 1.2625 17 1 2.7756 3.0285 1.0744 18 6 1.1520 2.1069 2.1980 19 6 1.3422 0.8710 3.1173 20 7 2.8121 0.8251 3.3256 21 6 3.2410 -0.5119 3.7574 22 1 3.1114 -1.2325 2.9499 23 6 2.4510 -0.9553 5.0105 24 6 3.5285 -1.7246 5.8064 25 7 4.8127 -1.1641 5.3695 26 6 4.6827 -0.4833 4.2150 27 8 5.5870 0.0722 3.6279 28 6 3.4153 1.1803 2.0228 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5654 0.5184 -2.5785 35 1 0.8488 0.9795 -2.4825 36 1 2.1765 3.5615 -7.6093 37 1 1.1679 3.0280 2.7806 38 1 0.2269 2.0260 1.6273 39 1 0.9955 -0.0352 2.6207 40 1 0.8234 1.0110 4.0657 41 1 2.0934 -0.0921 5.5718 42 1 1.6240 -1.6110 4.7383 43 1 3.3923 -1.5661 6.8762 44 1 3.4824 -2.7882 5.5731 45 1 5.6485 -1.2715 5.8498 46 1 3.6391 0.2751 1.4582 47 1 4.3276 1.7564 2.1773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715037253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:28 Heat of formation + Delta-G solvation = -79.722959 kcal Electronic energy + Delta-G solvation = -28256.992592 eV Core-core repulsion = 24372.067152 eV Total energy + Delta-G solvation = -3884.925440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90745 -41.03475 -39.19267 -37.42196 -36.46853 -34.59592 -33.35801 -31.57558 -30.91768 -30.40978 -28.73908 -27.69886 -27.31695 -24.51357 -23.28816 -22.69249 -21.80905 -20.98867 -20.23564 -19.55615 -18.54938 -18.33217 -17.87820 -17.26888 -16.89463 -16.59447 -16.44596 -16.23166 -15.68855 -15.38109 -15.09630 -14.81530 -14.75950 -14.60465 -14.50005 -14.14139 -14.02339 -13.84668 -13.54783 -13.40124 -13.18837 -13.05929 -13.00411 -12.92205 -12.62913 -12.54676 -12.34987 -12.32998 -12.10051 -11.85014 -11.78130 -11.68328 -11.16710 -10.89561 -10.85713 -10.27978 -10.05542 -9.80443 -9.47102 -8.69100 -8.35617 -6.14376 1.23052 1.40710 1.43243 1.48860 1.53042 1.56241 2.02058 2.26011 2.38160 2.98476 2.99927 3.23043 3.27134 3.46488 3.59308 3.72500 3.82805 3.92373 4.00367 4.10321 4.15958 4.20898 4.25601 4.35026 4.36919 4.42344 4.47209 4.47797 4.67200 4.72807 4.81054 4.90225 4.95947 4.99520 5.00964 5.08210 5.13746 5.18046 5.39986 5.40773 5.48142 5.77154 5.82148 5.98200 6.03015 6.18815 6.24264 7.05363 7.10911 7.25590 8.74020 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002346 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.658708 B =11931.878783 C =11995.290425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.533 3.467 5 O -0.565 6.565 6 C -0.121 4.121 7 S -0.155 6.155 8 C -0.542 4.542 9 H 0.083 0.917 10 C 0.012 3.988 11 N -0.912 5.912 12 Si 1.001 2.999 13 H -0.255 1.255 14 H -0.273 1.273 15 H -0.275 1.275 16 C 0.126 3.874 17 H 0.075 0.925 18 C -0.129 4.129 19 C 0.043 3.957 20 N -0.504 5.504 21 C 0.036 3.964 22 H 0.089 0.911 23 C -0.118 4.118 24 C 0.100 3.900 25 N -0.726 5.726 26 C 0.514 3.486 27 O -0.580 6.580 28 C 0.047 3.953 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.415 0.585 46 H 0.051 0.949 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -17.439 30.164 35.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.331 5.331 4 C 0.321 3.679 5 O -0.443 6.443 6 C -0.272 4.272 7 S 0.072 5.928 8 C -0.690 4.690 9 H 0.101 0.899 10 C -0.193 4.193 11 N -0.548 5.548 12 Si 0.822 3.178 13 H -0.179 1.179 14 H -0.198 1.198 15 H -0.200 1.200 16 C 0.022 3.978 17 H 0.093 0.907 18 C -0.167 4.167 19 C -0.084 4.084 20 N -0.230 5.230 21 C -0.076 4.076 22 H 0.106 0.894 23 C -0.155 4.155 24 C -0.023 4.023 25 N -0.381 5.381 26 C 0.299 3.701 27 O -0.458 6.458 28 C -0.082 4.082 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.254 0.746 46 H 0.069 0.931 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.672 -14.959 30.145 33.976 hybrid contribution 0.315 -1.772 -1.743 2.506 sum -4.357 -16.731 28.402 33.251 Atomic orbital electron populations 1.22347 0.94054 1.03979 1.02585 1.21832 0.95903 0.80716 1.03984 1.48013 1.65218 1.15109 1.04772 1.20172 0.75894 0.86277 0.85530 1.90674 1.48402 1.17883 1.87363 1.23386 1.06040 1.02818 0.94922 1.85629 1.91304 1.18110 0.97741 1.23197 1.54195 0.98931 0.92684 0.89916 1.26164 0.94173 0.97175 1.01787 1.70201 1.46239 1.15675 1.22731 0.84882 0.78046 0.78227 0.76642 1.17886 1.19800 1.20021 1.21905 0.96143 0.96716 0.83049 0.90652 1.22981 0.96880 1.00121 0.96755 1.23476 0.86741 0.97315 1.00852 1.64733 1.07416 1.24323 1.26525 1.22658 0.92976 0.91585 1.00359 0.89392 1.22847 0.97953 1.01915 0.92833 1.22363 0.80365 0.98521 1.01089 1.46297 1.13432 1.54001 1.24407 1.21244 0.91052 0.76669 0.81087 1.90743 1.47900 1.46764 1.60437 1.22967 0.97028 0.98902 0.89326 0.88768 0.90632 0.94082 0.90399 0.88478 0.87933 0.87227 0.92001 0.89649 0.89343 0.91149 0.86803 0.88468 0.85936 0.87645 0.88869 0.74602 0.93123 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.64 71.98 0.69 -2.01 16 2 C 0.10 1.87 4.70 86.38 0.41 2.28 16 3 N -0.60 -16.88 2.37 -792.97 -1.88 -18.76 16 4 C 0.53 21.23 7.64 87.66 0.67 21.90 16 5 O -0.56 -27.95 15.24 -3.02 -0.05 -27.99 16 6 C -0.12 -5.03 4.70 71.24 0.33 -4.69 16 7 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 8 C -0.54 -31.42 9.50 67.95 0.65 -30.78 16 9 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 10 C 0.01 0.67 5.49 84.85 0.47 1.13 16 11 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 12 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 C 0.13 3.32 3.42 45.87 0.16 3.48 16 17 H 0.08 2.56 6.99 -2.39 -0.02 2.54 16 18 C -0.13 -2.32 6.10 31.89 0.19 -2.12 16 19 C 0.04 0.48 5.06 86.74 0.44 0.92 16 20 N -0.50 -8.67 5.09 -857.36 -4.36 -13.04 16 21 C 0.04 0.47 2.44 44.91 0.11 0.58 16 22 H 0.09 1.03 7.83 -2.39 -0.02 1.01 16 23 C -0.12 -0.40 5.82 31.65 0.18 -0.22 16 24 C 0.10 0.23 7.78 86.83 0.68 0.91 16 25 N -0.73 -8.00 6.25 -459.47 -2.87 -10.87 16 26 C 0.51 10.30 8.05 87.86 0.71 11.01 16 27 O -0.58 -18.28 16.71 -3.03 -0.05 -18.33 16 28 C 0.05 1.15 4.92 86.45 0.43 1.58 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.00 5.26 -2.39 -0.01 0.99 16 31 H 0.04 0.87 6.88 -2.39 -0.02 0.85 16 32 H 0.08 1.58 6.66 -2.39 -0.02 1.56 16 33 H 0.10 1.38 5.22 -2.39 -0.01 1.37 16 34 H 0.10 3.95 7.57 -2.39 -0.02 3.94 16 35 H 0.11 4.10 6.74 -2.39 -0.02 4.08 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.56 5.89 -2.39 -0.01 1.55 16 39 H 0.07 0.55 5.88 -2.39 -0.01 0.54 16 40 H 0.11 0.75 7.67 -2.39 -0.02 0.73 16 41 H 0.10 0.36 7.66 -2.39 -0.02 0.35 16 42 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.41 3.80 8.96 -92.71 -0.83 2.97 16 46 H 0.05 1.27 6.16 -2.39 -0.01 1.25 16 47 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 Total: -1.00 -88.64 375.53 -1.78 -90.42 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.17 Total: 15.19 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 6.11 Total: 3.97 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -8.83 Total: -99.29 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.10 Total: -46.32 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -88.64 -1.78 -90.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.698 kcal (2) G-P(sol) polarization free energy of solvation -88.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds