Wall clock time and date at job start Wed Apr 1 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46803 * 2 1 4 4 C 1.34770 * 119.99754 * 89.99880 * 3 2 1 5 5 O 1.21281 * 119.99490 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00673 * 359.97438 * 4 3 2 7 7 S 1.81001 * 109.47470 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99891 * 180.02562 * 7 6 4 9 9 H 1.07997 * 120.00233 * 359.97438 * 8 7 6 10 10 C 1.38803 * 119.99752 * 180.02562 * 8 7 6 11 11 N 1.31632 * 120.00142 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00064 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47266 * 89.99305 * 12 10 8 14 14 H 1.48494 * 109.46877 * 209.99781 * 12 10 8 15 15 H 1.48500 * 109.46786 * 329.99496 * 12 10 8 16 16 C 1.46498 * 119.99453 * 269.99490 * 3 2 1 17 17 H 1.09000 * 110.29209 * 359.32787 * 16 3 2 18 18 C 1.54262 * 110.32032 * 121.45865 * 16 3 2 19 19 C 1.54386 * 105.06112 * 118.89424 * 18 16 3 20 20 N 1.48562 * 104.59388 * 23.84847 * 19 18 16 21 21 C 1.46896 * 111.00171 * 200.95846 * 20 19 18 22 22 H 1.09002 * 110.43124 * 52.48419 * 21 20 19 23 23 C 1.54623 * 110.48701 * 175.16667 * 21 20 19 24 24 C 1.54488 * 101.76396 * 143.47952 * 23 21 20 25 25 N 1.46766 * 105.47044 * 334.58638 * 24 23 21 26 26 C 1.34417 * 111.30010 * 17.01377 * 25 24 23 27 27 O 1.21285 * 124.93998 * 179.55549 * 26 25 24 28 28 C 1.48561 * 104.22531 * 320.52099 * 20 19 18 29 29 H 1.09003 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47592 * 300.00448 * 1 2 3 31 31 H 1.09009 * 109.47181 * 60.00960 * 1 2 3 32 32 H 1.08994 * 109.47131 * 239.99285 * 2 1 3 33 33 H 1.08997 * 109.46908 * 119.99645 * 2 1 3 34 34 H 1.09003 * 109.47410 * 300.00547 * 6 4 3 35 35 H 1.09004 * 109.46616 * 60.00109 * 6 4 3 36 36 H 0.96999 * 120.00076 * 180.02562 * 11 10 8 37 37 H 1.08998 * 110.31894 * 237.78697 * 18 16 3 38 38 H 1.08992 * 110.32392 * 359.89605 * 18 16 3 39 39 H 1.08991 * 110.40918 * 142.62955 * 19 18 16 40 40 H 1.09003 * 110.40749 * 265.07365 * 19 18 16 41 41 H 1.09001 * 110.97116 * 261.59686 * 23 21 20 42 42 H 1.08996 * 110.96951 * 25.36435 * 23 21 20 43 43 H 1.09000 * 110.24491 * 215.58502 * 24 23 21 44 44 H 1.08998 * 110.31572 * 93.62256 * 24 23 21 45 45 H 0.96998 * 124.34946 * 197.03964 * 25 24 23 46 46 H 1.09003 * 110.41136 * 280.70430 * 28 20 19 47 47 H 1.08999 * 110.41537 * 158.26194 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2428 2.0166 1.1672 5 8 2.6475 3.1599 1.1671 6 6 1.9912 1.3065 2.4723 7 16 2.3840 2.4151 3.8480 8 6 2.0106 1.3591 5.2082 9 1 1.6547 0.3551 5.0305 10 6 2.1728 1.8181 6.5080 11 7 2.6062 3.0420 6.7246 12 14 1.7777 0.6984 7.9501 13 1 2.9930 -0.0646 8.3319 14 1 1.3247 1.5174 9.1030 15 1 0.7010 -0.2477 7.5615 16 6 2.2625 2.0718 -1.2688 17 1 2.0418 1.4112 -2.1072 18 6 1.4062 3.3520 -1.3554 19 6 2.4232 4.5077 -1.4716 20 7 3.6464 3.8753 -2.0291 21 6 4.8358 4.6899 -1.7466 22 1 4.8981 4.9158 -0.6820 23 6 6.1148 3.9642 -2.2245 24 6 6.9722 5.1424 -2.7377 25 7 6.0149 6.1923 -3.1055 26 6 4.8082 5.9663 -2.5579 27 8 3.8387 6.6822 -2.6940 28 6 3.7248 2.5616 -1.3398 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.9431 1.0126 2.5299 35 1 2.6211 0.4188 2.5302 36 1 2.7199 3.3626 7.6330 37 1 0.7665 3.3205 -2.2374 38 1 0.8030 3.4656 -0.4548 39 1 2.0499 5.2758 -2.1488 40 1 2.6291 4.9330 -0.4893 41 1 6.6072 3.4553 -1.3959 42 1 5.8890 3.2660 -3.0304 43 1 7.5501 4.8364 -3.6099 44 1 7.6374 5.4973 -1.9506 45 1 6.2257 6.9514 -3.6712 46 1 4.1344 2.6824 -0.3369 47 1 4.3316 1.8646 -1.9178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715037254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:31 Heat of formation + Delta-G solvation = -51.566183 kcal Electronic energy + Delta-G solvation = -28480.538127 eV Core-core repulsion = 24596.833657 eV Total energy + Delta-G solvation = -3883.704471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83424 -39.94789 -37.47905 -36.41795 -35.61678 -32.49012 -32.44091 -30.38697 -29.66966 -28.94807 -27.88273 -26.32564 -25.47469 -23.31125 -22.58996 -21.68736 -20.98526 -20.06108 -18.67664 -17.58026 -17.52696 -17.06381 -16.50829 -16.46485 -15.33342 -15.20574 -14.85619 -14.81908 -14.26758 -14.03374 -13.93241 -13.83675 -13.73141 -13.53647 -13.34073 -12.97609 -12.90039 -12.59709 -12.51501 -12.35600 -12.02998 -11.80941 -11.56414 -11.46500 -11.25696 -11.17455 -11.06693 -11.04030 -10.92015 -10.80254 -10.67408 -9.84627 -9.82046 -9.31557 -9.29133 -9.08151 -8.52672 -8.44384 -8.23972 -6.51435 -6.23371 -3.93746 2.46617 2.89181 3.03286 3.13452 3.20573 3.24514 3.28728 3.57096 4.04310 4.12698 4.18903 4.29089 4.58245 4.74765 4.83068 4.84343 4.90245 5.01919 5.11741 5.14012 5.18126 5.22800 5.30298 5.34848 5.51707 5.52806 5.54281 5.57858 5.68537 5.70987 5.76422 5.81489 5.90805 5.94045 6.05567 6.13721 6.21917 6.23737 6.25583 6.51862 6.65016 6.81018 6.91374 6.94922 7.55671 7.58258 8.13801 8.33438 8.57311 9.22110 10.83963 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.002973 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.403206 B = 9416.463784 C =10665.051941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.616 5.616 4 C 0.534 3.466 5 O -0.510 6.510 6 C -0.151 4.151 7 S -0.061 6.061 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.150 3.850 17 H 0.094 0.906 18 C -0.127 4.127 19 C 0.042 3.958 20 N -0.490 5.490 21 C 0.038 3.962 22 H 0.089 0.911 23 C -0.127 4.127 24 C 0.104 3.896 25 N -0.734 5.734 26 C 0.534 3.466 27 O -0.523 6.523 28 C 0.022 3.978 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.409 0.591 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -4.036 -21.353 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.352 5.352 4 C 0.322 3.678 5 O -0.384 6.384 6 C -0.302 4.302 7 S 0.165 5.835 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.046 3.954 17 H 0.113 0.887 18 C -0.166 4.166 19 C -0.086 4.086 20 N -0.215 5.215 21 C -0.074 4.074 22 H 0.106 0.894 23 C -0.165 4.165 24 C -0.021 4.021 25 N -0.391 5.391 26 C 0.319 3.681 27 O -0.397 6.397 28 C -0.106 4.106 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.248 0.752 46 H 0.088 0.912 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.476 -1.971 -21.788 22.552 hybrid contribution -0.489 -1.735 1.639 2.436 sum 4.987 -3.706 -20.149 21.085 Atomic orbital electron populations 1.22229 0.95970 1.02117 1.02767 1.21557 0.94516 0.82405 1.03144 1.48164 1.67528 1.14284 1.05244 1.20266 0.76550 0.86521 0.84433 1.90667 1.43598 1.17257 1.86890 1.23603 1.04681 1.04467 0.97425 1.85360 1.86761 1.17999 0.93350 1.22852 1.51735 1.01466 0.92231 0.91011 1.24985 0.94686 0.95511 0.98366 1.70016 1.42993 1.15616 1.21648 0.86183 0.78717 0.79930 0.80776 1.20278 1.20757 1.19695 1.21644 0.94259 0.94091 0.85442 0.88747 1.22620 0.97872 0.93901 1.02211 1.23097 0.89179 0.96651 0.99649 1.65449 1.01244 1.02476 1.52322 1.22499 0.92646 0.92894 0.99411 0.89378 1.22720 0.93940 0.97351 1.02514 1.22051 0.91848 0.87579 1.00645 1.46105 1.12107 1.28113 1.52805 1.20593 0.82268 0.86476 0.78792 1.90726 1.35385 1.52203 1.61401 1.23468 0.96958 0.91177 0.99040 0.91682 0.91973 0.92428 0.90629 0.89989 0.89370 0.89497 0.92201 0.91280 0.90408 0.89566 0.91964 0.89087 0.88958 0.90162 0.90920 0.75219 0.91157 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.08 5.91 -4.04 -0.02 1.06 16 3 N -0.62 -8.13 2.46 -164.54 -0.41 -8.54 16 4 C 0.53 9.50 6.58 -10.99 -0.07 9.43 16 5 O -0.51 -10.61 11.68 5.56 0.06 -10.54 16 6 C -0.15 -2.97 4.71 36.00 0.17 -2.80 16 7 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 8 C -0.53 -15.02 9.50 30.94 0.29 -14.73 16 9 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 10 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 12 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 C 0.15 1.81 3.53 -66.55 -0.23 1.57 16 17 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 18 C -0.13 -1.71 5.99 -25.34 -0.15 -1.86 16 19 C 0.04 0.63 5.27 -2.18 -0.01 0.62 16 20 N -0.49 -6.40 5.18 -222.04 -1.15 -7.55 16 21 C 0.04 0.47 2.43 -67.73 -0.16 0.30 16 22 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 23 C -0.13 -1.03 5.94 -25.10 -0.15 -1.18 16 24 C 0.10 0.67 7.78 -3.12 -0.02 0.64 16 25 N -0.73 -6.68 6.24 -59.20 -0.37 -7.05 16 26 C 0.53 7.08 8.03 -10.86 -0.09 6.99 16 27 O -0.52 -8.95 16.12 5.55 0.09 -8.86 16 28 C 0.02 0.28 5.03 -2.18 -0.01 0.26 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 33 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 34 H 0.09 1.65 7.19 -51.92 -0.37 1.27 16 35 H 0.09 1.59 7.40 -51.91 -0.38 1.21 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.22 7.11 -51.93 -0.37 0.85 16 39 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 40 H 0.06 1.12 6.92 -51.93 -0.36 0.76 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.41 3.00 8.96 -40.82 -0.37 2.63 16 46 H 0.07 1.07 5.93 -51.93 -0.31 0.76 16 47 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -35.29 381.62 -10.08 -45.37 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.38 Total: 3.28 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.18 Total: 1.01 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -1.19 Total: -48.37 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.15 Total: -19.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.29 -10.08 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.200 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds