Wall clock time and date at job start Wed Apr 1 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46803 * 2 1 4 4 C 1.34770 * 119.99754 * 89.99880 * 3 2 1 5 5 O 1.21281 * 119.99490 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00673 * 359.97438 * 4 3 2 7 7 S 1.81001 * 109.47470 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99891 * 180.02562 * 7 6 4 9 9 H 1.07997 * 120.00233 * 359.97438 * 8 7 6 10 10 C 1.38803 * 119.99752 * 180.02562 * 8 7 6 11 11 N 1.31632 * 120.00142 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00064 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47266 * 89.99305 * 12 10 8 14 14 H 1.48494 * 109.46877 * 209.99781 * 12 10 8 15 15 H 1.48500 * 109.46786 * 329.99496 * 12 10 8 16 16 C 1.46498 * 119.99453 * 269.99490 * 3 2 1 17 17 H 1.09000 * 110.29209 * 359.32787 * 16 3 2 18 18 C 1.54262 * 110.32032 * 121.45865 * 16 3 2 19 19 C 1.54386 * 105.06112 * 118.89424 * 18 16 3 20 20 N 1.48562 * 104.59388 * 23.84847 * 19 18 16 21 21 C 1.46896 * 111.00171 * 200.95846 * 20 19 18 22 22 H 1.09002 * 110.43124 * 52.48419 * 21 20 19 23 23 C 1.54623 * 110.48701 * 175.16667 * 21 20 19 24 24 C 1.54488 * 101.76396 * 143.47952 * 23 21 20 25 25 N 1.46766 * 105.47044 * 334.58638 * 24 23 21 26 26 C 1.34417 * 111.30010 * 17.01377 * 25 24 23 27 27 O 1.21285 * 124.93998 * 179.55549 * 26 25 24 28 28 C 1.48561 * 104.22531 * 320.52099 * 20 19 18 29 29 H 1.09003 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47592 * 300.00448 * 1 2 3 31 31 H 1.09009 * 109.47181 * 60.00960 * 1 2 3 32 32 H 1.08994 * 109.47131 * 239.99285 * 2 1 3 33 33 H 1.08997 * 109.46908 * 119.99645 * 2 1 3 34 34 H 1.09003 * 109.47410 * 300.00547 * 6 4 3 35 35 H 1.09004 * 109.46616 * 60.00109 * 6 4 3 36 36 H 0.96999 * 120.00076 * 180.02562 * 11 10 8 37 37 H 1.08998 * 110.31894 * 237.78697 * 18 16 3 38 38 H 1.08992 * 110.32392 * 359.89605 * 18 16 3 39 39 H 1.08991 * 110.40918 * 142.62955 * 19 18 16 40 40 H 1.09003 * 110.40749 * 265.07365 * 19 18 16 41 41 H 1.09001 * 110.97116 * 261.59686 * 23 21 20 42 42 H 1.08996 * 110.96951 * 25.36435 * 23 21 20 43 43 H 1.09000 * 110.24491 * 215.58502 * 24 23 21 44 44 H 1.08998 * 110.31572 * 93.62256 * 24 23 21 45 45 H 0.96998 * 124.34946 * 197.03964 * 25 24 23 46 46 H 1.09003 * 110.41136 * 280.70430 * 28 20 19 47 47 H 1.08999 * 110.41537 * 158.26194 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2428 2.0166 1.1672 5 8 2.6475 3.1599 1.1671 6 6 1.9912 1.3065 2.4723 7 16 2.3840 2.4151 3.8480 8 6 2.0106 1.3591 5.2082 9 1 1.6547 0.3551 5.0305 10 6 2.1728 1.8181 6.5080 11 7 2.6062 3.0420 6.7246 12 14 1.7777 0.6984 7.9501 13 1 2.9930 -0.0646 8.3319 14 1 1.3247 1.5174 9.1030 15 1 0.7010 -0.2477 7.5615 16 6 2.2625 2.0718 -1.2688 17 1 2.0418 1.4112 -2.1072 18 6 1.4062 3.3520 -1.3554 19 6 2.4232 4.5077 -1.4716 20 7 3.6464 3.8753 -2.0291 21 6 4.8358 4.6899 -1.7466 22 1 4.8981 4.9158 -0.6820 23 6 6.1148 3.9642 -2.2245 24 6 6.9722 5.1424 -2.7377 25 7 6.0149 6.1923 -3.1055 26 6 4.8082 5.9663 -2.5579 27 8 3.8387 6.6822 -2.6940 28 6 3.7248 2.5616 -1.3398 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.9431 1.0126 2.5299 35 1 2.6211 0.4188 2.5302 36 1 2.7199 3.3626 7.6330 37 1 0.7665 3.3205 -2.2374 38 1 0.8030 3.4656 -0.4548 39 1 2.0499 5.2758 -2.1488 40 1 2.6291 4.9330 -0.4893 41 1 6.6072 3.4553 -1.3959 42 1 5.8890 3.2660 -3.0304 43 1 7.5501 4.8364 -3.6099 44 1 7.6374 5.4973 -1.9506 45 1 6.2257 6.9514 -3.6712 46 1 4.1344 2.6824 -0.3369 47 1 4.3316 1.8646 -1.9178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715037254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:30 Heat of formation + Delta-G solvation = -79.201067 kcal Electronic energy + Delta-G solvation = -28481.736466 eV Core-core repulsion = 24596.833657 eV Total energy + Delta-G solvation = -3884.902809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87494 -41.07525 -38.66591 -37.40816 -36.75831 -34.59290 -33.45048 -31.31325 -31.02975 -29.92885 -28.99643 -27.70349 -27.22049 -24.27568 -23.45147 -22.73229 -22.00602 -21.07057 -20.22243 -19.23566 -18.44007 -18.07496 -17.69617 -17.60924 -16.88915 -16.57433 -16.38592 -15.96061 -15.71248 -15.16463 -15.02602 -14.78832 -14.72691 -14.67093 -14.50726 -14.42555 -14.01627 -13.93516 -13.49363 -13.27248 -13.18701 -13.12294 -12.90657 -12.77957 -12.62098 -12.51683 -12.34999 -12.19721 -12.13275 -11.90853 -11.79444 -11.67104 -11.14810 -10.90720 -10.68066 -10.25627 -10.10913 -9.67098 -9.58805 -8.66611 -8.35493 -6.13050 1.25799 1.41072 1.42563 1.46715 1.55881 1.63798 2.08806 2.27061 2.34283 2.98659 3.05037 3.25386 3.27634 3.53645 3.57975 3.75861 3.89925 4.03620 4.07360 4.13860 4.19252 4.23290 4.37429 4.43374 4.45046 4.48232 4.51763 4.62802 4.71116 4.75240 4.86658 4.90227 4.92292 5.01354 5.02877 5.04617 5.08109 5.13220 5.39742 5.40699 5.51747 5.75819 5.81672 5.91541 5.98734 6.18638 6.35996 7.05892 7.21043 7.23696 8.73544 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.002973 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.403206 B = 9416.463784 C =10665.051941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.600 5.600 4 C 0.532 3.468 5 O -0.549 6.549 6 C -0.124 4.124 7 S -0.151 6.151 8 C -0.544 4.544 9 H 0.081 0.919 10 C 0.014 3.986 11 N -0.912 5.912 12 Si 0.997 3.003 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.258 1.258 16 C 0.151 3.849 17 H 0.140 0.860 18 C -0.123 4.123 19 C 0.048 3.952 20 N -0.480 5.480 21 C 0.031 3.969 22 H 0.057 0.943 23 C -0.117 4.117 24 C 0.103 3.897 25 N -0.719 5.719 26 C 0.522 3.478 27 O -0.574 6.574 28 C 0.026 3.974 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.270 0.730 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.017 0.983 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.086 0.914 45 H 0.419 0.581 46 H 0.037 0.963 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -7.701 -23.513 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.334 5.334 4 C 0.319 3.681 5 O -0.427 6.427 6 C -0.275 4.275 7 S 0.076 5.924 8 C -0.692 4.692 9 H 0.099 0.901 10 C -0.191 4.191 11 N -0.548 5.548 12 Si 0.819 3.181 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.182 1.182 16 C 0.047 3.953 17 H 0.157 0.843 18 C -0.162 4.162 19 C -0.080 4.080 20 N -0.205 5.205 21 C -0.082 4.082 22 H 0.074 0.926 23 C -0.155 4.155 24 C -0.021 4.021 25 N -0.374 5.374 26 C 0.308 3.692 27 O -0.453 6.453 28 C -0.102 4.102 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.259 0.741 46 H 0.055 0.945 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.306 -5.685 -23.998 25.455 hybrid contribution -0.708 -0.585 2.189 2.373 sum 5.598 -6.269 -21.809 23.373 Atomic orbital electron populations 1.22199 0.95509 1.03313 1.01703 1.21905 0.94836 0.80341 1.05124 1.48120 1.65845 1.15376 1.04079 1.20001 0.76805 0.86027 0.85221 1.90684 1.45638 1.18903 1.87426 1.23415 1.05454 1.03085 0.95515 1.85546 1.87476 1.22103 0.97248 1.23182 1.51613 1.01701 0.92726 0.90086 1.26116 0.94209 0.97114 1.01675 1.70187 1.44352 1.17878 1.22407 0.84974 0.79055 0.77734 0.76364 1.19133 1.20439 1.18200 1.21915 0.93589 0.94053 0.85723 0.84279 1.22581 0.97584 0.94180 1.01842 1.22874 0.91100 0.97172 0.96882 1.65485 1.00703 1.02742 1.51547 1.22578 0.94460 0.93475 0.97689 0.92558 1.22771 0.91585 0.97909 1.03227 1.22334 0.91104 0.85983 1.02634 1.46111 1.11166 1.28774 1.51394 1.20863 0.82858 0.86480 0.79023 1.90690 1.37469 1.53702 1.63445 1.23516 0.97603 0.91295 0.97836 0.89339 0.94796 0.91763 0.86511 0.90192 0.88312 0.87728 0.92064 0.88830 0.93324 0.91024 0.96403 0.88018 0.87497 0.86483 0.89602 0.74072 0.94451 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.10 1.65 5.91 86.38 0.51 2.16 16 3 N -0.60 -14.81 2.46 -792.87 -1.95 -16.76 16 4 C 0.53 19.24 6.58 87.66 0.58 19.82 16 5 O -0.55 -24.33 11.68 -3.03 -0.04 -24.36 16 6 C -0.12 -4.91 4.71 71.23 0.34 -4.57 16 7 S -0.15 -8.38 20.57 -56.49 -1.16 -9.55 16 8 C -0.54 -31.10 9.50 67.96 0.65 -30.46 16 9 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 10 C 0.01 0.77 5.49 84.86 0.47 1.24 16 11 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 12 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 C 0.15 3.28 3.53 45.89 0.16 3.45 16 17 H 0.14 1.93 7.84 -2.39 -0.02 1.91 16 18 C -0.12 -3.32 5.99 31.49 0.19 -3.13 16 19 C 0.05 1.55 5.27 86.45 0.46 2.01 16 20 N -0.48 -12.56 5.18 -856.39 -4.44 -17.00 16 21 C 0.03 0.78 2.43 44.91 0.11 0.88 16 22 H 0.06 1.77 7.98 -2.39 -0.02 1.76 16 23 C -0.12 -1.64 5.94 31.65 0.19 -1.45 16 24 C 0.10 1.04 7.78 86.83 0.68 1.72 16 25 N -0.72 -12.31 6.24 -459.80 -2.87 -15.18 16 26 C 0.52 14.32 8.03 87.90 0.71 15.03 16 27 O -0.57 -21.02 16.12 -3.05 -0.05 -21.07 16 28 C 0.03 0.60 5.03 86.45 0.43 1.04 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.12 1.09 7.94 -2.39 -0.02 1.08 16 33 H 0.08 1.41 6.44 -2.39 -0.02 1.39 16 34 H 0.10 3.69 7.19 -2.39 -0.02 3.68 16 35 H 0.10 3.75 7.40 -2.39 -0.02 3.74 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.60 7.11 -2.39 -0.02 1.59 16 39 H 0.07 2.48 6.99 -2.39 -0.02 2.47 16 40 H 0.02 0.72 6.92 -2.39 -0.02 0.70 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.23 8.00 -2.39 -0.02 1.21 16 43 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.42 5.63 8.96 -92.71 -0.83 4.80 16 46 H 0.04 1.15 5.93 -2.39 -0.01 1.14 16 47 H 0.11 1.85 7.95 -2.39 -0.02 1.83 16 Total: -1.00 -84.85 381.62 -1.85 -86.69 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.15 Total: 21.90 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.19 Total: 5.69 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -8.97 Total: -104.93 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.08 Total: -45.43 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.55 kcal Total: -84.85 -1.85 -86.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.490 kcal (2) G-P(sol) polarization free energy of solvation -84.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds