Wall clock time and date at job start Wed Apr 1 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47591 * 2 1 4 4 C 1.34776 * 119.99558 * 270.00074 * 3 2 1 5 5 O 1.21281 * 119.99988 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.00298 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.47172 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99976 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00242 * 0.02562 * 8 7 6 10 10 C 1.38798 * 120.00093 * 179.97438 * 8 7 6 11 11 N 1.31634 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00246 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.46854 * 90.00073 * 12 10 8 14 14 H 1.48500 * 109.47305 * 210.00123 * 12 10 8 15 15 H 1.48501 * 109.46804 * 330.00161 * 12 10 8 16 16 C 1.46491 * 120.00258 * 89.99155 * 3 2 1 17 17 H 1.09001 * 110.90733 * 356.14131 * 16 3 2 18 18 C 1.55138 * 110.99739 * 232.27003 * 16 3 2 19 19 C 1.54320 * 103.02210 * 206.25674 * 18 16 3 20 20 N 1.47437 * 107.23257 * 22.28526 * 19 18 16 21 21 C 1.46901 * 111.00223 * 123.25511 * 20 19 18 22 22 H 1.08998 * 110.43457 * 181.69272 * 21 20 19 23 23 C 1.54634 * 110.48287 * 59.15683 * 21 20 19 24 24 C 1.54484 * 101.76123 * 216.52337 * 23 21 20 25 25 N 1.46765 * 105.47369 * 25.41681 * 24 23 21 26 26 C 1.34422 * 111.30134 * 342.98236 * 25 24 23 27 27 O 1.21281 * 124.93959 * 180.40742 * 26 25 24 28 28 C 1.47846 * 108.56923 * 0.98995 * 20 19 18 29 29 H 1.08993 * 109.47234 * 300.00290 * 1 2 3 30 30 H 1.09000 * 109.46889 * 60.00436 * 1 2 3 31 31 H 1.08998 * 109.47559 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47069 * 239.99514 * 2 1 3 33 33 H 1.09008 * 109.46810 * 120.00204 * 2 1 3 34 34 H 1.09008 * 109.47172 * 300.00077 * 6 4 3 35 35 H 1.08999 * 109.47491 * 59.99900 * 6 4 3 36 36 H 0.96998 * 120.00071 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.70480 * 87.87312 * 18 16 3 38 38 H 1.09005 * 110.70206 * 324.64349 * 18 16 3 39 39 H 1.08998 * 109.88703 * 262.87492 * 19 18 16 40 40 H 1.08999 * 109.88555 * 141.69210 * 19 18 16 41 41 H 1.08995 * 110.96980 * 334.64292 * 23 21 20 42 42 H 1.08997 * 110.96698 * 98.41046 * 23 21 20 43 43 H 1.09000 * 110.23872 * 144.41591 * 24 23 21 44 44 H 1.09000 * 110.24691 * 266.32634 * 24 23 21 45 45 H 0.97003 * 124.34704 * 162.95845 * 25 24 23 46 46 H 1.08995 * 110.38030 * 94.73340 * 28 20 19 47 47 H 1.09000 * 110.37255 * 217.07995 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0164 -1.1672 5 8 2.6470 3.1599 -1.1673 6 6 1.9924 1.3058 -2.4723 7 16 2.3851 2.4145 -3.8481 8 6 2.0129 1.3580 -5.2082 9 1 1.6576 0.3537 -5.0305 10 6 2.1754 1.8167 -6.5081 11 7 2.6080 3.0409 -6.7247 12 14 1.7802 0.6969 -7.9501 13 1 0.3554 0.8667 -8.3325 14 1 2.6475 1.0493 -9.1028 15 1 2.0234 -0.7155 -7.5611 16 6 2.2625 2.0718 1.2686 17 1 1.9693 1.4486 2.1135 18 6 1.5311 3.4394 1.3067 19 6 2.3874 4.2644 2.2903 20 7 3.7283 3.6522 2.3217 21 6 4.7634 4.6333 1.9693 22 1 5.7472 4.1640 1.9662 23 6 4.7358 5.8260 2.9531 24 6 5.0664 7.0118 2.0197 25 7 4.6387 6.5877 0.6813 26 6 4.4664 5.2558 0.6229 27 8 4.1227 4.6426 -0.3654 28 6 3.7447 2.5063 1.3877 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6229 0.4184 -2.5298 35 1 0.9445 1.0112 -2.5303 36 1 2.7219 3.3614 -7.6331 37 1 0.5153 3.3228 1.6842 38 1 1.5257 3.9011 0.3192 39 1 1.9425 4.2341 3.2848 40 1 2.4586 5.2958 1.9449 41 1 3.7472 5.9428 3.3969 42 1 5.4973 5.7129 3.7246 43 1 4.5148 7.8998 2.3283 44 1 6.1379 7.2118 2.0289 45 1 4.4980 7.1911 -0.0651 46 1 4.1290 2.8145 0.4154 47 1 4.3467 1.6938 1.7944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715037255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:33 Heat of formation + Delta-G solvation = -38.630516 kcal Electronic energy + Delta-G solvation = -29264.999044 eV Core-core repulsion = 25381.855506 eV Total energy + Delta-G solvation = -3883.143538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00806 -39.56666 -37.19313 -36.14127 -35.36276 -32.35695 -32.28569 -30.14493 -29.49629 -29.25027 -27.53647 -26.11846 -25.37096 -23.16281 -22.36982 -21.83372 -21.19353 -19.55999 -18.56555 -17.46721 -17.18899 -17.11397 -16.34454 -15.99160 -15.46004 -14.83423 -14.74397 -14.66470 -14.19745 -13.84610 -13.72572 -13.62221 -13.49914 -13.38499 -13.20111 -13.06003 -12.71782 -12.48758 -12.37503 -12.06187 -11.96066 -11.81167 -11.38358 -11.33866 -11.17531 -11.08442 -11.00539 -10.94067 -10.92440 -10.71223 -10.61851 -9.89045 -9.71498 -8.99401 -8.97531 -8.77055 -8.26686 -8.10600 -8.07053 -6.37850 -6.14050 -3.82425 2.83822 3.05798 3.25959 3.29979 3.32642 3.34222 3.45224 3.68442 3.94977 4.28330 4.35252 4.44020 4.63255 4.73243 4.84483 4.95178 4.98108 5.07198 5.20140 5.21312 5.28999 5.33000 5.35307 5.37595 5.45173 5.51331 5.62224 5.67595 5.69656 5.79476 5.81097 5.87982 5.99282 6.05744 6.13349 6.17022 6.27903 6.34376 6.43746 6.72634 6.83357 6.97540 7.08994 7.20741 7.66314 7.80118 8.42419 8.45767 8.96675 9.31036 10.93168 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003512 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.474609 B = 7971.851076 C = 9627.501729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.617 5.617 4 C 0.514 3.486 5 O -0.461 6.461 6 C -0.149 4.149 7 S -0.056 6.056 8 C -0.534 4.534 9 H 0.070 0.930 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.916 3.084 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.153 3.847 17 H 0.091 0.909 18 C -0.160 4.160 19 C 0.045 3.955 20 N -0.500 5.500 21 C 0.046 3.954 22 H 0.112 0.888 23 C -0.126 4.126 24 C 0.103 3.897 25 N -0.743 5.743 26 C 0.463 3.537 27 O -0.448 6.448 28 C 0.006 3.994 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.267 0.733 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.407 0.593 46 H 0.106 0.894 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 1.947 23.855 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.353 5.353 4 C 0.301 3.699 5 O -0.332 6.332 6 C -0.299 4.299 7 S 0.171 5.829 8 C -0.683 4.683 9 H 0.088 0.912 10 C -0.136 4.136 11 N -0.504 5.504 12 Si 0.743 3.257 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.048 3.952 17 H 0.109 0.891 18 C -0.199 4.199 19 C -0.084 4.084 20 N -0.224 5.224 21 C -0.067 4.067 22 H 0.130 0.870 23 C -0.164 4.164 24 C -0.023 4.023 25 N -0.403 5.403 26 C 0.244 3.756 27 O -0.317 6.317 28 C -0.122 4.122 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.246 0.754 46 H 0.124 0.876 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.263 3.162 23.755 24.071 hybrid contribution -0.984 -1.495 -1.914 2.620 sum 1.280 1.667 21.841 21.942 Atomic orbital electron populations 1.22225 0.96253 1.01900 1.02583 1.21499 0.94255 0.82787 1.02936 1.47887 1.68343 1.13971 1.05131 1.20384 0.77794 0.87470 0.84240 1.90887 1.40356 1.15850 1.86094 1.23588 1.04187 1.04369 0.97804 1.85459 1.86763 1.17653 0.93073 1.22900 1.51344 1.01525 0.92505 0.91160 1.24972 0.94811 0.95496 0.98299 1.70032 1.43223 1.15679 1.21446 0.86209 0.78344 0.80306 0.80883 1.20350 1.20816 1.19730 1.21874 0.94484 0.93212 0.85665 0.89091 1.23243 0.98098 0.96122 1.02440 1.22750 0.88889 0.97631 0.99082 1.63931 1.03162 1.06853 1.48410 1.22657 0.98427 0.93360 0.92260 0.86997 1.22705 1.03950 0.92447 0.97278 1.21978 0.99938 0.97751 0.82617 1.46327 1.71393 1.09104 1.13491 1.22031 0.78477 0.83194 0.91861 1.91145 1.41788 1.64180 1.34573 1.23721 0.97293 0.92593 0.98579 0.92666 0.92021 0.91842 0.90115 0.90916 0.89910 0.89841 0.92341 0.91663 0.87820 0.90655 0.92670 0.89547 0.89060 0.90739 0.91405 0.75427 0.87568 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.24 37.16 0.38 -1.48 16 2 C 0.11 1.28 5.91 -4.04 -0.02 1.25 16 3 N -0.62 -9.26 2.56 -163.69 -0.42 -9.67 16 4 C 0.51 10.19 6.97 -10.99 -0.08 10.11 16 5 O -0.46 -10.53 8.60 -18.95 -0.16 -10.70 16 6 C -0.15 -3.21 4.71 36.00 0.17 -3.04 16 7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 8 C -0.53 -15.74 9.50 30.94 0.29 -15.44 16 9 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 10 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 11 N -0.87 -26.95 13.22 55.49 0.73 -26.21 16 12 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.15 2.05 3.53 -65.79 -0.23 1.82 16 17 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 18 C -0.16 -2.25 6.26 -24.91 -0.16 -2.40 16 19 C 0.04 0.53 5.27 -2.84 -0.01 0.52 16 20 N -0.50 -6.07 5.24 -223.31 -1.17 -7.24 16 21 C 0.05 0.52 3.07 -67.72 -0.21 0.31 16 22 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 23 C -0.13 -0.95 6.42 -25.09 -0.16 -1.11 16 24 C 0.10 0.74 7.78 -3.12 -0.02 0.72 16 25 N -0.74 -8.47 6.24 -59.20 -0.37 -8.84 16 26 C 0.46 6.88 6.29 -10.86 -0.07 6.81 16 27 O -0.45 -9.18 11.97 -18.95 -0.23 -9.41 16 28 C 0.01 0.09 5.77 -2.29 -0.01 0.07 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.80 7.22 -51.93 -0.38 0.42 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16 33 H 0.07 0.68 7.99 -51.92 -0.41 0.26 16 34 H 0.08 1.69 7.40 -51.91 -0.38 1.31 16 35 H 0.08 1.70 7.19 -51.92 -0.37 1.32 16 36 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.92 5.58 -51.93 -0.29 1.63 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.70 5.89 -51.93 -0.31 0.40 16 41 H 0.09 0.65 6.55 -51.93 -0.34 0.31 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.41 4.55 8.96 -40.82 -0.37 4.18 16 46 H 0.11 1.95 3.88 -51.93 -0.20 1.75 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -36.70 370.92 -10.64 -47.33 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.15 Total: 5.78 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.23 Total: 0.20 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -1.22 Total: -51.97 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.39 Total: -20.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.70 -10.64 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.701 kcal (2) G-P(sol) polarization free energy of solvation -36.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds