Wall clock time and date at job start Wed Apr 1 2020 01:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47591 * 2 1 4 4 C 1.34776 * 119.99558 * 270.00074 * 3 2 1 5 5 O 1.21281 * 119.99988 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.00298 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.47172 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99976 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00242 * 0.02562 * 8 7 6 10 10 C 1.38798 * 120.00093 * 179.97438 * 8 7 6 11 11 N 1.31634 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00246 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.46854 * 90.00073 * 12 10 8 14 14 H 1.48500 * 109.47305 * 210.00123 * 12 10 8 15 15 H 1.48501 * 109.46804 * 330.00161 * 12 10 8 16 16 C 1.46491 * 120.00258 * 89.99155 * 3 2 1 17 17 H 1.09001 * 110.90733 * 356.14131 * 16 3 2 18 18 C 1.55138 * 110.99739 * 232.27003 * 16 3 2 19 19 C 1.54320 * 103.02210 * 206.25674 * 18 16 3 20 20 N 1.47437 * 107.23257 * 22.28526 * 19 18 16 21 21 C 1.46901 * 111.00223 * 123.25511 * 20 19 18 22 22 H 1.08998 * 110.43457 * 181.69272 * 21 20 19 23 23 C 1.54634 * 110.48287 * 59.15683 * 21 20 19 24 24 C 1.54484 * 101.76123 * 216.52337 * 23 21 20 25 25 N 1.46765 * 105.47369 * 25.41681 * 24 23 21 26 26 C 1.34422 * 111.30134 * 342.98236 * 25 24 23 27 27 O 1.21281 * 124.93959 * 180.40742 * 26 25 24 28 28 C 1.47846 * 108.56923 * 0.98995 * 20 19 18 29 29 H 1.08993 * 109.47234 * 300.00290 * 1 2 3 30 30 H 1.09000 * 109.46889 * 60.00436 * 1 2 3 31 31 H 1.08998 * 109.47559 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47069 * 239.99514 * 2 1 3 33 33 H 1.09008 * 109.46810 * 120.00204 * 2 1 3 34 34 H 1.09008 * 109.47172 * 300.00077 * 6 4 3 35 35 H 1.08999 * 109.47491 * 59.99900 * 6 4 3 36 36 H 0.96998 * 120.00071 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.70480 * 87.87312 * 18 16 3 38 38 H 1.09005 * 110.70206 * 324.64349 * 18 16 3 39 39 H 1.08998 * 109.88703 * 262.87492 * 19 18 16 40 40 H 1.08999 * 109.88555 * 141.69210 * 19 18 16 41 41 H 1.08995 * 110.96980 * 334.64292 * 23 21 20 42 42 H 1.08997 * 110.96698 * 98.41046 * 23 21 20 43 43 H 1.09000 * 110.23872 * 144.41591 * 24 23 21 44 44 H 1.09000 * 110.24691 * 266.32634 * 24 23 21 45 45 H 0.97003 * 124.34704 * 162.95845 * 25 24 23 46 46 H 1.08995 * 110.38030 * 94.73340 * 28 20 19 47 47 H 1.09000 * 110.37255 * 217.07995 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0164 -1.1672 5 8 2.6470 3.1599 -1.1673 6 6 1.9924 1.3058 -2.4723 7 16 2.3851 2.4145 -3.8481 8 6 2.0129 1.3580 -5.2082 9 1 1.6576 0.3537 -5.0305 10 6 2.1754 1.8167 -6.5081 11 7 2.6080 3.0409 -6.7247 12 14 1.7802 0.6969 -7.9501 13 1 0.3554 0.8667 -8.3325 14 1 2.6475 1.0493 -9.1028 15 1 2.0234 -0.7155 -7.5611 16 6 2.2625 2.0718 1.2686 17 1 1.9693 1.4486 2.1135 18 6 1.5311 3.4394 1.3067 19 6 2.3874 4.2644 2.2903 20 7 3.7283 3.6522 2.3217 21 6 4.7634 4.6333 1.9693 22 1 5.7472 4.1640 1.9662 23 6 4.7358 5.8260 2.9531 24 6 5.0664 7.0118 2.0197 25 7 4.6387 6.5877 0.6813 26 6 4.4664 5.2558 0.6229 27 8 4.1227 4.6426 -0.3654 28 6 3.7447 2.5063 1.3877 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6229 0.4184 -2.5298 35 1 0.9445 1.0112 -2.5303 36 1 2.7219 3.3614 -7.6331 37 1 0.5153 3.3228 1.6842 38 1 1.5257 3.9011 0.3192 39 1 1.9425 4.2341 3.2848 40 1 2.4586 5.2958 1.9449 41 1 3.7472 5.9428 3.3969 42 1 5.4973 5.7129 3.7246 43 1 4.5148 7.8998 2.3283 44 1 6.1379 7.2118 2.0289 45 1 4.4980 7.1911 -0.0651 46 1 4.1290 2.8145 0.4154 47 1 4.3467 1.6938 1.7944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715037255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:32 Heat of formation + Delta-G solvation = -66.892862 kcal Electronic energy + Delta-G solvation = -29266.224591 eV Core-core repulsion = 25381.855506 eV Total energy + Delta-G solvation = -3884.369085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03859 -40.82656 -38.35820 -37.21895 -36.60549 -34.60613 -33.28761 -31.14032 -30.90368 -30.29294 -28.65811 -27.68852 -27.04629 -24.23937 -23.20656 -22.95449 -22.14334 -20.60682 -20.20181 -19.18417 -18.21697 -18.18275 -17.55463 -17.13919 -16.90404 -16.59681 -16.29879 -15.88395 -15.61766 -15.02651 -14.78334 -14.68642 -14.59463 -14.51857 -14.33589 -14.32886 -14.21439 -14.00374 -13.24757 -13.18849 -13.07019 -12.91855 -12.89748 -12.83254 -12.60691 -12.44829 -12.34350 -12.19681 -12.08432 -11.77987 -11.73277 -11.64500 -11.16112 -11.00644 -10.28872 -10.21951 -9.89744 -9.50610 -9.16945 -8.66113 -8.36041 -6.13539 1.25678 1.39179 1.44797 1.55776 1.75321 1.82745 2.15263 2.27563 2.56459 2.94901 2.97116 3.29330 3.53344 3.63051 3.67174 3.76845 3.86936 4.07520 4.14960 4.20925 4.21944 4.22965 4.34834 4.42873 4.44309 4.48981 4.58861 4.61852 4.73366 4.77076 4.87684 4.90598 5.00114 5.03582 5.09629 5.17251 5.18742 5.29456 5.36340 5.38198 5.70584 5.86004 5.96859 6.06538 6.17256 6.20079 6.47858 7.04272 7.30094 7.62796 8.73226 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003512 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.474609 B = 7971.851076 C = 9627.501729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.508 3.492 5 O -0.492 6.492 6 C -0.120 4.120 7 S -0.148 6.148 8 C -0.547 4.547 9 H 0.078 0.922 10 C 0.013 3.987 11 N -0.913 5.913 12 Si 1.000 3.000 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.258 1.258 16 C 0.154 3.846 17 H 0.131 0.869 18 C -0.160 4.160 19 C 0.050 3.950 20 N -0.486 5.486 21 C 0.044 3.956 22 H 0.115 0.885 23 C -0.112 4.112 24 C 0.099 3.901 25 N -0.743 5.743 26 C 0.448 3.552 27 O -0.516 6.516 28 C 0.006 3.994 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.404 0.596 46 H 0.063 0.937 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 0.286 26.890 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.340 5.340 4 C 0.293 3.707 5 O -0.365 6.365 6 C -0.272 4.272 7 S 0.079 5.921 8 C -0.695 4.695 9 H 0.096 0.904 10 C -0.192 4.192 11 N -0.549 5.549 12 Si 0.821 3.179 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.182 1.182 16 C 0.050 3.950 17 H 0.148 0.852 18 C -0.199 4.199 19 C -0.078 4.078 20 N -0.209 5.209 21 C -0.069 4.069 22 H 0.133 0.867 23 C -0.150 4.150 24 C -0.025 4.025 25 N -0.400 5.400 26 C 0.231 3.769 27 O -0.390 6.390 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.241 0.759 46 H 0.082 0.918 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.805 1.514 26.871 26.974 hybrid contribution -0.822 -0.925 -2.738 3.005 sum 0.983 0.589 24.133 24.160 Atomic orbital electron populations 1.22170 0.95306 1.03211 1.01642 1.21814 0.94980 0.80851 1.04465 1.47827 1.66936 1.15042 1.04188 1.20143 0.78318 0.87183 0.85039 1.90937 1.41812 1.17192 1.86590 1.23398 1.04787 1.02797 0.96194 1.85653 1.87553 1.21815 0.97076 1.23210 1.51622 1.01704 0.92980 0.90358 1.26153 0.94149 0.97211 1.01676 1.70208 1.44358 1.17998 1.22360 0.84947 0.78481 0.78243 0.76253 1.19165 1.20107 1.18184 1.22127 0.93976 0.93408 0.85510 0.85176 1.23142 0.99715 0.96629 1.00413 1.22795 0.88596 0.96484 0.99886 1.64067 1.03401 1.06515 1.46892 1.22816 0.98257 0.94451 0.91336 0.86687 1.22762 1.05371 0.89993 0.96863 1.22307 1.01476 0.98519 0.80152 1.46523 1.70033 1.08245 1.15230 1.22769 0.77492 0.84152 0.92440 1.91131 1.44961 1.65818 1.37100 1.23622 0.97826 0.93755 0.97090 0.91663 0.94869 0.89381 0.90857 0.87158 0.88852 0.88756 0.92064 0.89879 0.92915 0.87411 0.93930 0.89061 0.85958 0.88363 0.89420 0.75874 0.91843 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 10.24 71.98 0.74 -2.48 16 2 C 0.10 2.15 5.91 86.38 0.51 2.66 16 3 N -0.60 -17.85 2.56 -790.18 -2.02 -19.88 16 4 C 0.51 21.04 6.97 87.66 0.61 21.65 16 5 O -0.49 -24.24 8.60 20.40 0.18 -24.07 16 6 C -0.12 -5.41 4.71 71.23 0.34 -5.07 16 7 S -0.15 -8.90 20.57 -56.49 -1.16 -10.06 16 8 C -0.55 -33.21 9.50 67.95 0.65 -32.57 16 9 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 10 C 0.01 0.75 5.49 84.86 0.47 1.22 16 11 N -0.91 -58.73 13.22 21.65 0.29 -58.44 16 12 Si 1.00 45.61 29.55 68.60 2.03 47.64 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 16 C 0.15 3.90 3.53 46.38 0.16 4.06 16 17 H 0.13 2.34 7.92 -2.39 -0.02 2.32 16 18 C -0.16 -4.44 6.26 31.78 0.20 -4.24 16 19 C 0.05 1.13 5.27 86.65 0.46 1.59 16 20 N -0.49 -11.08 5.24 -860.40 -4.51 -15.58 16 21 C 0.04 0.97 3.07 44.91 0.14 1.11 16 22 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 23 C -0.11 -1.36 6.42 31.66 0.20 -1.16 16 24 C 0.10 1.23 7.78 86.83 0.68 1.90 16 25 N -0.74 -17.37 6.24 -459.79 -2.87 -20.24 16 26 C 0.45 14.01 6.29 87.90 0.55 14.56 16 27 O -0.52 -23.10 11.97 20.40 0.24 -22.85 16 28 C 0.01 0.16 5.77 86.78 0.50 0.66 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.03 0.83 7.22 -2.39 -0.02 0.81 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.68 6.44 -2.39 -0.02 1.67 16 33 H 0.11 1.59 7.99 -2.38 -0.02 1.57 16 34 H 0.09 3.92 7.40 -2.39 -0.02 3.91 16 35 H 0.09 3.96 7.19 -2.40 -0.02 3.95 16 36 H 0.27 16.10 8.31 -92.71 -0.77 15.32 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 2.08 5.58 -2.38 -0.01 2.06 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.07 5.89 -2.39 -0.01 1.05 16 41 H 0.09 1.07 6.55 -2.39 -0.02 1.05 16 42 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.40 9.67 8.96 -92.71 -0.83 8.83 16 46 H 0.06 2.46 3.88 -2.39 -0.01 2.45 16 47 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -88.56 370.92 -1.47 -90.02 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.16 Total: 29.57 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.20 Total: 3.89 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -9.11 Total: -114.14 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: 0.42 Total: -46.92 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.16 Total: -10.06 kcal Total: -88.56 -1.47 -90.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal (2) G-P(sol) polarization free energy of solvation -88.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds