Wall clock time and date at job start Wed Apr 1 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47550 * 2 1 4 4 C 1.46497 * 119.99976 * 89.99638 * 3 2 1 5 5 C 1.52997 * 109.47043 * 270.00348 * 4 3 2 6 6 N 1.46904 * 109.46950 * 180.02562 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.41378 * 128.00562 * 89.99875 * 8 7 6 10 10 C 1.50693 * 126.80520 * 359.94365 * 9 8 7 11 11 N 1.30180 * 106.39223 * 179.97438 * 9 8 7 12 12 O 1.20921 * 111.60526 * 359.97438 * 11 9 8 13 13 C 1.34038 * 111.56906 * 359.76782 * 12 11 9 14 14 C 1.50698 * 126.77910 * 180.28070 * 13 12 11 15 15 C 1.34777 * 119.99807 * 270.00347 * 3 2 1 16 16 O 1.21277 * 119.99826 * 180.02562 * 15 3 2 17 17 C 1.50698 * 120.00137 * 359.97438 * 15 3 2 18 18 S 1.80998 * 109.47242 * 180.02562 * 17 15 3 19 19 C 1.76204 * 100.00038 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99880 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99894 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00159 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47061 * 89.99782 * 23 21 19 25 25 H 1.48497 * 109.47166 * 210.00145 * 23 21 19 26 26 H 1.48505 * 109.46950 * 330.00064 * 23 21 19 27 27 H 1.08997 * 109.47118 * 300.00651 * 1 2 3 28 28 H 1.09000 * 109.47102 * 60.00166 * 1 2 3 29 29 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47442 * 240.00054 * 2 1 3 31 31 H 1.09000 * 109.47102 * 119.99834 * 2 1 3 32 32 H 1.09005 * 109.46893 * 150.00166 * 4 3 2 33 33 H 1.09004 * 109.47411 * 30.00652 * 4 3 2 34 34 H 1.08995 * 109.47319 * 60.00302 * 5 4 3 35 35 H 1.09003 * 109.47435 * 299.99626 * 5 4 3 36 36 H 1.00902 * 111.00190 * 56.03777 * 6 5 4 37 37 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 38 38 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 39 39 H 1.08998 * 109.47175 * 89.99856 * 10 9 8 40 40 H 1.09001 * 109.47365 * 209.99855 * 10 9 8 41 41 H 1.09004 * 109.47013 * 329.99970 * 10 9 8 42 42 H 1.09003 * 109.47192 * 270.11205 * 14 13 12 43 43 H 1.08998 * 109.47171 * 30.11340 * 14 13 12 44 44 H 1.09004 * 109.47291 * 150.11341 * 14 13 12 45 45 H 1.09000 * 109.47207 * 300.00319 * 17 15 3 46 46 H 1.09001 * 109.47099 * 60.00514 * 17 15 3 47 47 H 0.97000 * 120.00259 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9875 2.7931 1.7103 6 7 1.2325 3.4861 2.9822 7 6 0.0271 4.1909 3.4384 8 6 0.3161 4.8877 4.7431 9 6 0.8043 6.1999 4.9397 10 6 1.1490 7.2046 3.8707 11 7 0.8976 6.3681 6.2272 12 8 0.5481 5.3808 6.8317 13 6 0.1622 4.4040 5.9989 14 6 -0.3408 3.0366 6.3837 15 6 2.2430 2.0165 -1.1672 16 8 2.6478 3.1598 -1.1672 17 6 1.9922 1.3060 -2.4723 18 16 2.3849 2.4146 -3.8481 19 6 2.0112 1.3587 -5.2082 20 1 1.6552 0.3546 -5.0305 21 6 2.1732 1.8177 -6.5081 22 7 1.8936 1.0290 -7.5242 23 14 2.7881 3.5545 -6.8155 24 1 4.2708 3.5474 -6.8974 25 1 2.2242 4.0605 -8.0927 26 1 2.3582 4.4364 -5.7007 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7985 1.1383 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0665 1.8407 35 1 0.6995 3.5198 0.9507 36 1 2.0144 4.1191 2.9044 37 1 -0.2682 4.9270 2.6906 38 1 -0.7811 3.4737 3.5813 39 1 0.2680 7.8019 3.6359 40 1 1.9455 7.8570 4.2285 41 1 1.4827 6.6814 2.9745 42 1 0.5003 2.3469 6.4554 43 1 -0.8470 3.0936 7.3473 44 1 -1.0395 2.6801 5.6268 45 1 2.6227 0.4186 -2.5299 46 1 0.9443 1.0116 -2.5302 47 1 2.0072 1.3496 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716206801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:53 Heat of formation + Delta-G solvation = 17.776384 kcal Electronic energy + Delta-G solvation = -26877.614049 eV Core-core repulsion = 22996.916497 eV Total energy + Delta-G solvation = -3880.697551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.21203 -39.80734 -37.34404 -35.98666 -34.70599 -33.78574 -32.46418 -31.36795 -30.01057 -29.09777 -28.78408 -27.55220 -25.67882 -25.29192 -23.40844 -22.40686 -21.80362 -20.48539 -19.26650 -17.96764 -17.73251 -17.25785 -16.94593 -16.32063 -16.07644 -15.31018 -15.01194 -14.91812 -14.67512 -14.25173 -13.89213 -13.83039 -13.79284 -13.78075 -13.48348 -13.40613 -13.20056 -13.18796 -12.92597 -12.82574 -12.57886 -12.38692 -12.27116 -11.91917 -11.82529 -11.46344 -11.28562 -11.23161 -11.04323 -10.90438 -10.60709 -10.20141 -9.88302 -9.57235 -9.49051 -9.02911 -8.85522 -8.68011 -8.51802 -6.94911 -6.31363 -4.03288 1.14951 1.84433 2.65622 2.79407 2.88133 3.13606 3.30918 3.47853 3.55050 3.84052 4.05506 4.12775 4.30471 4.46805 4.53585 4.60308 4.76656 4.86741 4.91345 4.94599 5.00381 5.06190 5.07242 5.08851 5.14608 5.16203 5.20975 5.27663 5.31195 5.36116 5.40584 5.48017 5.59493 5.61857 5.66445 5.69794 5.80119 5.82846 5.85828 5.93964 6.13491 6.45129 6.64888 6.97255 7.40049 7.91650 7.98997 8.38702 8.39348 9.14836 10.77798 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.002104 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.801917 B =13305.180691 C =14480.783743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.617 5.617 4 C 0.122 3.878 5 C 0.041 3.959 6 N -0.682 5.682 7 C 0.140 3.860 8 C -0.202 4.202 9 C 0.026 3.974 10 C -0.078 4.078 11 N -0.369 5.369 12 O 0.094 5.906 13 C -0.011 4.011 14 C -0.071 4.071 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.121 4.121 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.344 0.656 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 1.062 27.380 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.353 5.353 4 C -0.002 4.002 5 C -0.089 4.089 6 N -0.314 5.314 7 C 0.010 3.990 8 C -0.206 4.206 9 C -0.133 4.133 10 C -0.136 4.136 11 N -0.075 5.075 12 O 0.030 5.970 13 C -0.076 4.076 14 C -0.128 4.128 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.272 4.272 18 S 0.081 5.919 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.160 1.160 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.162 0.838 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.648 3.172 28.329 28.882 hybrid contribution -0.520 -0.483 -1.656 1.802 sum -5.169 2.688 26.673 27.302 Atomic orbital electron populations 1.22297 0.95930 1.02413 1.02655 1.21600 0.94554 0.82162 1.03467 1.47932 1.67607 1.14340 1.05407 1.21259 0.96950 0.97266 0.84736 1.22446 0.99027 0.97983 0.89396 1.60468 1.06611 1.33916 1.30431 1.20049 0.93200 0.95558 0.90161 1.20800 1.09129 0.94651 0.96030 1.23495 1.01383 0.95896 0.92561 1.20188 1.02676 0.96209 0.94501 1.73854 1.18991 1.06966 1.07703 1.84803 1.60844 1.17072 1.34284 1.24286 1.00330 0.93836 0.89112 1.20334 1.01961 0.87253 1.03282 1.20332 0.76402 0.86486 0.84736 1.90685 1.44144 1.17553 1.86890 1.23339 1.05372 1.03300 0.95158 1.84787 1.88119 1.21342 0.97615 1.22297 1.51725 1.01912 0.90852 0.89389 1.24713 0.93789 0.97930 0.94892 1.69933 1.46561 1.36253 0.98881 0.86736 0.80278 0.85042 0.79796 1.19206 1.19953 1.15968 0.92365 0.91952 0.91429 0.89806 0.90346 0.90045 0.89922 0.90510 0.94253 0.83813 0.93572 0.89695 0.90088 0.90329 0.90098 0.88997 0.90094 0.89088 0.88560 0.88488 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.15 0.38 -1.14 16 2 C 0.11 0.99 5.98 -4.04 -0.02 0.97 16 3 N -0.62 -7.66 2.47 -173.69 -0.43 -8.09 16 4 C 0.12 1.28 5.71 -4.05 -0.02 1.26 16 5 C 0.04 0.40 6.01 -3.82 -0.02 0.37 16 6 N -0.68 -5.75 6.49 -115.05 -0.75 -6.50 16 7 C 0.14 1.09 6.01 -4.98 -0.03 1.06 16 8 C -0.20 -1.78 5.83 -104.42 -0.61 -2.39 16 9 C 0.03 0.26 7.33 -82.10 -0.60 -0.34 16 10 C -0.08 -0.62 10.39 36.00 0.37 -0.24 16 11 N -0.37 -4.29 12.07 33.42 0.40 -3.88 16 12 O 0.09 0.97 11.20 17.18 0.19 1.17 16 13 C -0.01 -0.09 7.49 -35.30 -0.26 -0.36 16 14 C -0.07 -0.32 10.30 36.00 0.37 0.05 16 15 C 0.53 9.20 7.69 -10.99 -0.08 9.12 16 16 O -0.52 -10.78 15.44 5.56 0.09 -10.69 16 17 C -0.12 -2.30 4.71 36.00 0.17 -2.13 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.27 13.97 55.49 0.78 -25.49 16 23 Si 0.86 21.60 27.74 -169.99 -4.72 16.88 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 H 0.06 0.46 6.26 -51.93 -0.33 0.14 16 28 H 0.06 0.67 7.22 -51.93 -0.38 0.29 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.08 1.00 7.42 -51.93 -0.39 0.62 16 33 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 34 H 0.08 0.67 6.26 -51.93 -0.33 0.34 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.34 3.04 8.72 -39.29 -0.34 2.70 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.57 7.44 -51.93 -0.39 0.19 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.32 7.43 -51.93 -0.39 -0.06 16 45 H 0.10 1.71 7.40 -51.92 -0.38 1.32 16 46 H 0.10 1.72 7.19 -51.92 -0.37 1.35 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -34.39 401.16 -7.93 -42.32 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.40 Total: -0.57 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.15 Total: -5.56 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.00 Total: -43.97 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.28 Total: -9.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.39 -7.93 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716206801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.094 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds