Wall clock time and date at job start Wed Apr 1 2020 01:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47550 * 2 1 4 4 C 1.46497 * 119.99976 * 89.99638 * 3 2 1 5 5 C 1.52997 * 109.47043 * 270.00348 * 4 3 2 6 6 N 1.46904 * 109.46950 * 180.02562 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.41378 * 128.00562 * 89.99875 * 8 7 6 10 10 C 1.50693 * 126.80520 * 359.94365 * 9 8 7 11 11 N 1.30180 * 106.39223 * 179.97438 * 9 8 7 12 12 O 1.20921 * 111.60526 * 359.97438 * 11 9 8 13 13 C 1.34038 * 111.56906 * 359.76782 * 12 11 9 14 14 C 1.50698 * 126.77910 * 180.28070 * 13 12 11 15 15 C 1.34777 * 119.99807 * 270.00347 * 3 2 1 16 16 O 1.21277 * 119.99826 * 180.02562 * 15 3 2 17 17 C 1.50698 * 120.00137 * 359.97438 * 15 3 2 18 18 S 1.80998 * 109.47242 * 180.02562 * 17 15 3 19 19 C 1.76204 * 100.00038 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99880 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99894 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00159 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47061 * 89.99782 * 23 21 19 25 25 H 1.48497 * 109.47166 * 210.00145 * 23 21 19 26 26 H 1.48505 * 109.46950 * 330.00064 * 23 21 19 27 27 H 1.08997 * 109.47118 * 300.00651 * 1 2 3 28 28 H 1.09000 * 109.47102 * 60.00166 * 1 2 3 29 29 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47442 * 240.00054 * 2 1 3 31 31 H 1.09000 * 109.47102 * 119.99834 * 2 1 3 32 32 H 1.09005 * 109.46893 * 150.00166 * 4 3 2 33 33 H 1.09004 * 109.47411 * 30.00652 * 4 3 2 34 34 H 1.08995 * 109.47319 * 60.00302 * 5 4 3 35 35 H 1.09003 * 109.47435 * 299.99626 * 5 4 3 36 36 H 1.00902 * 111.00190 * 56.03777 * 6 5 4 37 37 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 38 38 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 39 39 H 1.08998 * 109.47175 * 89.99856 * 10 9 8 40 40 H 1.09001 * 109.47365 * 209.99855 * 10 9 8 41 41 H 1.09004 * 109.47013 * 329.99970 * 10 9 8 42 42 H 1.09003 * 109.47192 * 270.11205 * 14 13 12 43 43 H 1.08998 * 109.47171 * 30.11340 * 14 13 12 44 44 H 1.09004 * 109.47291 * 150.11341 * 14 13 12 45 45 H 1.09000 * 109.47207 * 300.00319 * 17 15 3 46 46 H 1.09001 * 109.47099 * 60.00514 * 17 15 3 47 47 H 0.97000 * 120.00259 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9875 2.7931 1.7103 6 7 1.2325 3.4861 2.9822 7 6 0.0271 4.1909 3.4384 8 6 0.3161 4.8877 4.7431 9 6 0.8043 6.1999 4.9397 10 6 1.1490 7.2046 3.8707 11 7 0.8976 6.3681 6.2272 12 8 0.5481 5.3808 6.8317 13 6 0.1622 4.4040 5.9989 14 6 -0.3408 3.0366 6.3837 15 6 2.2430 2.0165 -1.1672 16 8 2.6478 3.1598 -1.1672 17 6 1.9922 1.3060 -2.4723 18 16 2.3849 2.4146 -3.8481 19 6 2.0112 1.3587 -5.2082 20 1 1.6552 0.3546 -5.0305 21 6 2.1732 1.8177 -6.5081 22 7 1.8936 1.0290 -7.5242 23 14 2.7881 3.5545 -6.8155 24 1 4.2708 3.5474 -6.8974 25 1 2.2242 4.0605 -8.0927 26 1 2.3582 4.4364 -5.7007 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7985 1.1383 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0665 1.8407 35 1 0.6995 3.5198 0.9507 36 1 2.0144 4.1191 2.9044 37 1 -0.2682 4.9270 2.6906 38 1 -0.7811 3.4737 3.5813 39 1 0.2680 7.8019 3.6359 40 1 1.9455 7.8570 4.2285 41 1 1.4827 6.6814 2.9745 42 1 0.5003 2.3469 6.4554 43 1 -0.8470 3.0936 7.3473 44 1 -1.0395 2.6801 5.6268 45 1 2.6227 0.4186 -2.5299 46 1 0.9443 1.0116 -2.5302 47 1 2.0072 1.3496 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716206801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:52 Heat of formation + Delta-G solvation = -5.241937 kcal Electronic energy + Delta-G solvation = -26878.612198 eV Core-core repulsion = 22996.916497 eV Total energy + Delta-G solvation = -3881.695701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93218 -41.02175 -38.14475 -37.02759 -35.45119 -34.67539 -34.40408 -32.23229 -31.18461 -29.86134 -29.55458 -28.27334 -27.83150 -26.08375 -24.32108 -23.21984 -22.50860 -21.13333 -20.60018 -19.52771 -18.70408 -18.25430 -17.94099 -17.29737 -17.11974 -17.02338 -16.39481 -15.90172 -15.65594 -15.24160 -15.07291 -14.90180 -14.80022 -14.60379 -14.38106 -14.33783 -14.15403 -13.84095 -13.80031 -13.58799 -13.47709 -13.35367 -13.21850 -13.04328 -12.92877 -12.84195 -12.64104 -12.56535 -12.24714 -11.90352 -11.87460 -11.66913 -11.17562 -10.95984 -10.88692 -10.52635 -10.18469 -9.79818 -9.50054 -9.00543 -8.51869 -6.22681 0.49546 0.97521 1.13638 1.30523 1.45317 1.52015 1.54598 2.06043 2.21460 2.24281 2.68089 2.86310 3.16505 3.32252 3.51759 3.58085 3.85228 3.93226 4.06660 4.13511 4.14880 4.18503 4.37193 4.40634 4.45822 4.47881 4.52614 4.54664 4.62092 4.64056 4.73310 4.76337 4.80786 4.81814 4.86796 4.97275 5.01625 5.09171 5.12276 5.29640 5.41063 5.56283 5.70551 5.88781 6.11140 6.22304 6.27059 6.93392 7.09955 7.30000 8.60364 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.002104 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.801917 B =13305.180691 C =14480.783743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.121 3.879 5 C 0.054 3.946 6 N -0.675 5.675 7 C 0.144 3.856 8 C -0.214 4.214 9 C 0.015 3.985 10 C -0.078 4.078 11 N -0.402 5.402 12 O 0.080 5.920 13 C -0.005 4.005 14 C -0.070 4.070 15 C 0.533 3.467 16 O -0.561 6.561 17 C -0.106 4.106 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.238 1.238 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.010 0.990 36 H 0.340 0.660 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 -0.002 29.323 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.335 5.335 4 C -0.001 4.001 5 C -0.076 4.076 6 N -0.306 5.306 7 C 0.015 3.985 8 C -0.218 4.218 9 C -0.144 4.144 10 C -0.135 4.135 11 N -0.111 5.111 12 O 0.019 5.981 13 C -0.069 4.069 14 C -0.127 4.127 15 C 0.320 3.680 16 O -0.440 6.440 17 C -0.257 4.257 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.161 1.161 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.028 0.972 36 H 0.158 0.842 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.221 2.057 30.316 30.831 hybrid contribution -0.400 -0.302 -2.098 2.157 sum -5.621 1.755 28.218 28.826 Atomic orbital electron populations 1.22261 0.95064 1.03549 1.02019 1.21928 0.95231 0.80263 1.05047 1.47922 1.65723 1.15306 1.04508 1.21421 0.96914 0.97681 0.84126 1.22287 0.98771 0.97558 0.89006 1.60505 1.06795 1.33922 1.29382 1.20059 0.93231 0.95720 0.89451 1.20925 1.09838 0.94340 0.96723 1.23912 1.00988 0.96930 0.92558 1.20243 1.03070 0.96058 0.94153 1.73843 1.20720 1.08033 1.08495 1.84761 1.61173 1.17407 1.34780 1.24987 0.98715 0.94482 0.88721 1.20550 1.02610 0.85015 1.04568 1.20013 0.76592 0.85910 0.85442 1.90672 1.46607 1.19236 1.87474 1.23310 1.06340 1.02270 0.93738 1.84711 1.88419 1.23087 0.99076 1.22431 1.51120 1.01419 0.92410 0.91893 1.25549 0.94046 1.01571 0.94819 1.70009 1.47747 1.38087 0.99508 0.85881 0.79904 0.80630 0.80039 1.18753 1.18372 1.16147 0.91149 0.94407 0.89446 0.90322 0.86769 0.92052 0.86785 0.88840 0.97179 0.84216 0.94165 0.87946 0.89240 0.90338 0.89622 0.87986 0.88624 0.87580 0.87203 0.87271 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.10 1.50 5.98 86.38 0.52 2.01 16 3 N -0.60 -13.58 2.47 -821.83 -2.03 -15.61 16 4 C 0.12 2.25 5.71 86.38 0.49 2.75 16 5 C 0.05 0.91 6.01 86.30 0.52 1.43 16 6 N -0.67 -9.95 6.49 -517.92 -3.36 -13.31 16 7 C 0.14 1.98 6.01 85.56 0.51 2.49 16 8 C -0.21 -3.50 5.83 -19.73 -0.12 -3.62 16 9 C 0.02 0.30 7.33 43.57 0.32 0.62 16 10 C -0.08 -1.22 10.39 71.23 0.74 -0.48 16 11 N -0.40 -9.37 12.07 -49.55 -0.60 -9.97 16 12 O 0.08 1.63 11.20 71.66 0.80 2.43 16 13 C 0.00 -0.07 7.49 25.04 0.19 0.12 16 14 C -0.07 -0.42 10.30 71.24 0.73 0.31 16 15 C 0.53 17.96 7.69 87.66 0.67 18.64 16 16 O -0.56 -23.41 15.44 -3.02 -0.05 -23.45 16 17 C -0.11 -3.95 4.71 71.24 0.34 -3.61 16 18 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 19 C -0.53 -30.35 10.04 67.96 0.68 -29.66 16 20 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 21 C 0.05 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -55.29 13.97 21.65 0.30 -54.99 16 23 Si 0.91 44.79 27.74 68.60 1.90 46.70 16 24 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 27 H 0.07 0.83 6.26 -2.39 -0.01 0.82 16 28 H 0.04 0.73 7.22 -2.39 -0.02 0.71 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.34 6.44 -2.39 -0.02 1.33 16 31 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 32 H 0.06 1.44 7.42 -2.38 -0.02 1.42 16 33 H 0.11 1.47 7.89 -2.39 -0.02 1.45 16 34 H 0.09 1.28 6.26 -2.39 -0.01 1.27 16 35 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.34 5.61 8.72 -89.69 -0.78 4.83 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 1.05 7.44 -2.39 -0.02 1.04 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.11 0.35 7.43 -2.39 -0.02 0.33 16 45 H 0.11 3.79 7.40 -2.40 -0.02 3.77 16 46 H 0.11 3.80 7.19 -2.39 -0.02 3.79 16 47 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.48 401.16 2.89 -73.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.16 Total: 12.24 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 6.80 Total: -7.56 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -5.69 Total: -93.88 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.76 Total: -21.03 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -76.48 2.89 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716206801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.349 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds