Wall clock time and date at job start Wed Apr 1 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50700 * 120.00168 * 2 1 4 4 N 1.46501 * 109.47175 * 124.99780 * 3 2 1 5 5 C 1.46766 * 124.35014 * 270.00255 * 4 3 2 6 6 C 1.54479 * 105.47559 * 197.03807 * 5 4 3 7 7 C 1.54633 * 101.76455 * 334.58360 * 6 5 4 8 8 H 1.09002 * 110.59537 * 266.06918 * 7 6 5 9 9 N 1.46894 * 110.48798 * 143.47664 * 7 6 5 10 10 C 1.46902 * 110.99901 * 158.77108 * 9 7 6 11 11 C 1.53005 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47178 * 65.00154 * 11 10 9 13 13 C 1.52996 * 109.46971 * 185.00149 * 11 10 9 14 14 N 1.46500 * 109.46846 * 304.99954 * 11 10 9 15 15 C 1.34775 * 119.99894 * 155.00309 * 14 11 10 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00022 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.34419 * 124.35135 * 90.02600 * 4 3 2 28 28 O 1.21281 * 124.94124 * 359.53338 * 27 4 3 29 29 H 1.08004 * 119.99969 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00335 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99969 * 179.97438 * 2 1 3 32 32 H 1.08991 * 109.46979 * 4.99720 * 3 2 1 33 33 H 1.09003 * 109.47045 * 244.99582 * 3 2 1 34 34 H 1.09002 * 110.24461 * 316.03563 * 5 4 3 35 35 H 1.08994 * 110.24653 * 78.03247 * 5 4 3 36 36 H 1.08997 * 110.96781 * 216.46495 * 6 5 4 37 37 H 1.09000 * 110.96801 * 92.69882 * 6 5 4 38 38 H 1.00892 * 111.00234 * 34.81687 * 9 7 6 39 39 H 1.09001 * 109.47158 * 60.00143 * 10 9 7 40 40 H 1.09006 * 109.47118 * 299.99928 * 10 9 7 41 41 H 1.09003 * 109.47098 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47117 * 299.99623 * 13 11 10 43 43 H 1.08998 * 109.47868 * 59.99744 * 13 11 10 44 44 H 0.97002 * 120.00447 * 334.99944 * 14 11 10 45 45 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 46 46 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 47 47 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6599 1.8433 2.4660 6 6 4.0156 2.0774 3.1687 7 6 4.9331 1.0804 2.4236 8 1 4.9857 0.1330 2.9602 9 7 6.2771 1.6480 2.2521 10 6 7.2701 0.5900 2.0231 11 6 8.6544 1.2185 1.8501 12 1 8.9543 1.6988 2.7815 13 6 9.6670 0.1302 1.4884 14 7 8.6069 2.2169 0.7790 15 6 9.4955 3.2301 0.7624 16 8 10.3340 3.3156 1.6344 17 6 9.4470 4.2568 -0.3396 18 16 10.7579 5.4784 -0.0842 19 6 10.4765 6.5243 -1.4740 20 1 9.6759 6.3020 -2.1638 21 6 11.2799 7.6375 -1.6788 22 7 12.2523 7.9115 -0.8351 23 14 10.9821 8.7459 -3.1526 24 1 9.8381 8.2231 -3.9420 25 1 10.6722 10.1204 -2.6836 26 1 12.1988 8.7758 -4.0035 27 6 4.2627 0.8916 1.0806 28 8 4.7929 0.4122 0.1009 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3586 2.1315 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 2.1107 2.7813 2.3840 35 1 2.0721 1.1081 3.0156 36 1 3.9528 1.8323 4.2289 37 1 4.3568 3.1027 3.0263 38 1 6.5325 2.2183 3.0442 39 1 7.0079 0.0343 1.1228 40 1 7.2831 -0.0872 2.8772 41 1 10.6532 0.5779 1.3656 42 1 9.7023 -0.6126 2.2853 43 1 9.3672 -0.3502 0.5570 44 1 7.9360 2.1487 0.0818 45 1 8.4782 4.7563 -0.3287 46 1 9.5910 3.7645 -1.3014 47 1 12.8141 8.6893 -0.9784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716386835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:26 Heat of formation + Delta-G solvation = -45.763967 kcal Electronic energy + Delta-G solvation = -27000.748502 eV Core-core repulsion = 23117.295635 eV Total energy + Delta-G solvation = -3883.452868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86470 -39.21761 -36.92232 -36.75581 -35.34089 -33.79046 -32.36588 -31.50947 -30.51277 -28.37443 -27.43779 -26.59942 -25.41757 -24.47492 -22.41866 -21.30787 -20.70497 -20.05736 -19.49394 -17.77078 -17.27158 -17.11202 -16.35424 -16.18031 -16.02964 -15.38070 -14.85047 -14.84511 -14.74651 -14.58000 -14.22067 -14.00009 -13.78420 -13.63265 -13.24342 -13.09126 -12.94099 -12.74890 -12.56594 -12.49059 -12.38682 -12.16229 -11.86758 -11.79561 -11.57138 -11.36166 -11.02376 -10.94739 -10.85232 -10.69123 -10.22554 -9.94587 -9.72773 -9.22491 -9.12069 -9.01495 -8.73363 -8.66540 -8.14081 -6.41454 -6.15619 -3.84710 1.65093 2.30136 2.76010 3.16087 3.25453 3.28184 3.33054 3.40116 3.70929 3.87074 3.92558 4.07173 4.27031 4.41681 4.48622 4.60033 4.63837 4.76538 4.87541 4.98257 5.04096 5.10296 5.19447 5.24635 5.27882 5.29492 5.33156 5.40590 5.43309 5.49394 5.63789 5.66944 5.82035 5.97897 6.03770 6.10113 6.10959 6.23766 6.29478 6.30780 6.55885 6.74347 6.87566 7.03450 7.66599 7.92614 7.98358 8.42277 8.82090 9.29980 10.91864 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.002344 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.244080 B =11941.639254 C =13499.477028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.152 3.848 4 N -0.618 5.618 5 C 0.107 3.893 6 C -0.136 4.136 7 C 0.055 3.945 8 H 0.081 0.919 9 N -0.665 5.665 10 C 0.048 3.952 11 C 0.148 3.852 12 H 0.084 0.916 13 C -0.163 4.163 14 N -0.719 5.719 15 C 0.534 3.466 16 O -0.527 6.527 17 C -0.152 4.152 18 S -0.062 6.062 19 C -0.532 4.532 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.530 3.470 28 O -0.516 6.516 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.352 0.648 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.403 0.597 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.535 -17.720 8.749 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.031 3.969 4 N -0.353 5.353 5 C -0.016 4.016 6 C -0.174 4.174 7 C -0.058 4.058 8 H 0.099 0.901 9 N -0.299 5.299 10 C -0.081 4.081 11 C 0.042 3.958 12 H 0.102 0.898 13 C -0.222 4.222 14 N -0.373 5.373 15 C 0.320 3.680 16 O -0.402 6.402 17 C -0.302 4.302 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.316 3.684 28 O -0.390 6.390 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.173 0.827 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.237 0.763 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.824 -17.578 9.003 30.182 hybrid contribution -1.570 0.140 -1.384 2.097 sum -24.393 -17.437 7.619 30.938 Atomic orbital electron populations 1.23884 0.95651 1.02143 1.00061 1.23354 0.96174 0.99186 1.00253 1.20477 0.91677 0.95267 0.89472 1.48191 1.12442 1.63060 1.11652 1.22034 0.97284 0.99734 0.82581 1.22842 0.93644 1.01028 0.99851 1.22166 0.90719 0.98593 0.94326 0.90139 1.60138 0.99539 1.22686 1.47493 1.22462 0.90777 0.92862 1.01999 1.20806 0.93367 0.89304 0.92302 0.89788 1.22152 1.00261 0.98219 1.01556 1.45887 1.35331 1.26944 1.29118 1.20233 0.80325 0.81093 0.86343 1.90674 1.36263 1.74871 1.38381 1.23513 1.06765 1.00463 0.99484 1.85326 1.37000 1.24584 1.36650 1.22926 1.20258 1.12867 1.12005 0.90941 1.24988 0.94570 0.96938 0.97179 1.70032 1.17795 1.27080 1.35507 0.86129 0.78265 0.79814 0.81361 1.19625 1.20629 1.20608 1.20742 0.81334 0.76504 0.89827 1.90700 1.67748 1.43974 1.36598 0.88326 0.88238 0.87260 0.89810 0.88929 0.90079 0.91117 0.88995 0.88518 0.82728 0.89149 0.93841 0.91351 0.92096 0.92363 0.76286 0.89336 0.89458 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 14.32 29.02 0.42 -0.52 16 2 C -0.17 -1.15 9.85 -36.02 -0.35 -1.51 16 3 C 0.15 1.10 6.37 -5.19 -0.03 1.07 16 4 N -0.62 -4.92 2.92 -173.79 -0.51 -5.42 16 5 C 0.11 0.52 7.35 -3.12 -0.02 0.49 16 6 C -0.14 -0.66 6.62 -25.10 -0.17 -0.82 16 7 C 0.06 0.42 3.24 -67.72 -0.22 0.21 16 8 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 9 N -0.67 -6.16 6.02 -106.73 -0.64 -6.80 16 10 C 0.05 0.47 5.04 -3.82 -0.02 0.45 16 11 C 0.15 1.82 2.81 -67.93 -0.19 1.63 16 12 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 13 C -0.16 -1.92 9.48 37.16 0.35 -1.56 16 14 N -0.72 -10.64 4.80 -53.81 -0.26 -10.90 16 15 C 0.53 10.46 7.81 -10.99 -0.09 10.37 16 16 O -0.53 -12.19 15.52 5.56 0.09 -12.10 16 17 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 18 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 19 C -0.53 -15.59 9.50 30.94 0.29 -15.29 16 20 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.53 5.60 7.64 -10.86 -0.08 5.51 16 28 O -0.52 -7.45 16.52 5.56 0.09 -7.35 16 29 H 0.10 0.40 7.84 -52.48 -0.41 -0.01 16 30 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.08 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.09 0.82 7.93 -51.93 -0.41 0.40 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.35 2.97 8.46 -39.30 -0.33 2.63 16 39 H 0.09 1.02 7.12 -51.93 -0.37 0.65 16 40 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.40 5.59 8.60 -40.82 -0.35 5.24 16 45 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 46 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -36.99 408.87 -9.25 -46.25 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.70 Total: 4.16 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.01 Total: -1.00 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.67 Total: -49.04 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.18 Total: -19.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.99 -9.25 -46.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716386835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.482 kcal (2) G-P(sol) polarization free energy of solvation -36.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds