Wall clock time and date at job start Wed Apr 1 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50700 * 120.00168 * 2 1 4 4 N 1.46501 * 109.47175 * 124.99780 * 3 2 1 5 5 C 1.46766 * 124.35014 * 270.00255 * 4 3 2 6 6 C 1.54479 * 105.47559 * 197.03807 * 5 4 3 7 7 C 1.54633 * 101.76455 * 334.58360 * 6 5 4 8 8 H 1.09002 * 110.59537 * 266.06918 * 7 6 5 9 9 N 1.46894 * 110.48798 * 143.47664 * 7 6 5 10 10 C 1.46902 * 110.99901 * 158.77108 * 9 7 6 11 11 C 1.53005 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47178 * 65.00154 * 11 10 9 13 13 C 1.52996 * 109.46971 * 185.00149 * 11 10 9 14 14 N 1.46500 * 109.46846 * 304.99954 * 11 10 9 15 15 C 1.34775 * 119.99894 * 155.00309 * 14 11 10 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00022 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.34419 * 124.35135 * 90.02600 * 4 3 2 28 28 O 1.21281 * 124.94124 * 359.53338 * 27 4 3 29 29 H 1.08004 * 119.99969 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00335 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99969 * 179.97438 * 2 1 3 32 32 H 1.08991 * 109.46979 * 4.99720 * 3 2 1 33 33 H 1.09003 * 109.47045 * 244.99582 * 3 2 1 34 34 H 1.09002 * 110.24461 * 316.03563 * 5 4 3 35 35 H 1.08994 * 110.24653 * 78.03247 * 5 4 3 36 36 H 1.08997 * 110.96781 * 216.46495 * 6 5 4 37 37 H 1.09000 * 110.96801 * 92.69882 * 6 5 4 38 38 H 1.00892 * 111.00234 * 34.81687 * 9 7 6 39 39 H 1.09001 * 109.47158 * 60.00143 * 10 9 7 40 40 H 1.09006 * 109.47118 * 299.99928 * 10 9 7 41 41 H 1.09003 * 109.47098 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47117 * 299.99623 * 13 11 10 43 43 H 1.08998 * 109.47868 * 59.99744 * 13 11 10 44 44 H 0.97002 * 120.00447 * 334.99944 * 14 11 10 45 45 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 46 46 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 47 47 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6599 1.8433 2.4660 6 6 4.0156 2.0774 3.1687 7 6 4.9331 1.0804 2.4236 8 1 4.9857 0.1330 2.9602 9 7 6.2771 1.6480 2.2521 10 6 7.2701 0.5900 2.0231 11 6 8.6544 1.2185 1.8501 12 1 8.9543 1.6988 2.7815 13 6 9.6670 0.1302 1.4884 14 7 8.6069 2.2169 0.7790 15 6 9.4955 3.2301 0.7624 16 8 10.3340 3.3156 1.6344 17 6 9.4470 4.2568 -0.3396 18 16 10.7579 5.4784 -0.0842 19 6 10.4765 6.5243 -1.4740 20 1 9.6759 6.3020 -2.1638 21 6 11.2799 7.6375 -1.6788 22 7 12.2523 7.9115 -0.8351 23 14 10.9821 8.7459 -3.1526 24 1 9.8381 8.2231 -3.9420 25 1 10.6722 10.1204 -2.6836 26 1 12.1988 8.7758 -4.0035 27 6 4.2627 0.8916 1.0806 28 8 4.7929 0.4122 0.1009 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3586 2.1315 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 2.1107 2.7813 2.3840 35 1 2.0721 1.1081 3.0156 36 1 3.9528 1.8323 4.2289 37 1 4.3568 3.1027 3.0263 38 1 6.5325 2.2183 3.0442 39 1 7.0079 0.0343 1.1228 40 1 7.2831 -0.0872 2.8772 41 1 10.6532 0.5779 1.3656 42 1 9.7023 -0.6126 2.2853 43 1 9.3672 -0.3502 0.5570 44 1 7.9360 2.1487 0.0818 45 1 8.4782 4.7563 -0.3287 46 1 9.5910 3.7645 -1.3014 47 1 12.8141 8.6893 -0.9784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716386835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:26 Heat of formation + Delta-G solvation = -73.408180 kcal Electronic energy + Delta-G solvation = -27001.947245 eV Core-core repulsion = 23117.295635 eV Total energy + Delta-G solvation = -3884.651611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51738 -40.66278 -37.88684 -37.49708 -36.13267 -34.62548 -34.56976 -32.68448 -31.25000 -29.91339 -28.06102 -27.65636 -27.18910 -25.23376 -23.02989 -22.37405 -21.42730 -21.21501 -20.12346 -19.82274 -17.98792 -17.84131 -17.65663 -17.36233 -16.88226 -16.68763 -16.38470 -16.09294 -15.88377 -15.57286 -15.41014 -14.77970 -14.68319 -14.60011 -14.39614 -14.26657 -14.03619 -13.86311 -13.50182 -13.28084 -13.16660 -13.13221 -13.09436 -12.97421 -12.90953 -12.58045 -12.45704 -12.25493 -11.93724 -11.79470 -11.68250 -11.15619 -10.98481 -10.84863 -10.43846 -10.27352 -10.01487 -9.72185 -9.42413 -8.65324 -8.34665 -6.12075 1.18354 1.27866 1.40819 1.47022 1.56538 1.59346 1.69123 2.21160 2.26744 2.37559 2.98973 3.08505 3.32209 3.34320 3.60355 3.84133 3.94809 4.03376 4.06085 4.12275 4.15237 4.16203 4.30631 4.42338 4.43381 4.48064 4.51793 4.55935 4.70137 4.72214 4.75627 4.77252 4.97542 4.99538 5.06367 5.11634 5.26234 5.41980 5.47926 5.59686 5.64618 5.79777 5.88428 6.13221 6.20208 6.36444 6.59313 7.06516 7.21240 7.32223 8.74817 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.002344 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.244080 B =11941.639254 C =13499.477028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.190 4.190 3 C 0.150 3.850 4 N -0.617 5.617 5 C 0.103 3.897 6 C -0.125 4.125 7 C 0.058 3.942 8 H 0.096 0.904 9 N -0.680 5.680 10 C 0.063 3.937 11 C 0.146 3.854 12 H 0.074 0.926 13 C -0.159 4.159 14 N -0.696 5.696 15 C 0.538 3.462 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.143 6.143 19 C -0.547 4.547 20 H 0.078 0.922 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.514 3.486 28 O -0.569 6.569 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.358 0.642 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.410 0.590 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.496 -17.997 9.082 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.210 4.210 3 C 0.028 3.972 4 N -0.351 5.351 5 C -0.019 4.019 6 C -0.163 4.163 7 C -0.055 4.055 8 H 0.113 0.887 9 N -0.314 5.314 10 C -0.067 4.067 11 C 0.042 3.958 12 H 0.092 0.908 13 C -0.217 4.217 14 N -0.348 5.348 15 C 0.323 3.677 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.084 5.916 19 C -0.695 4.695 20 H 0.096 0.904 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.198 1.198 27 C 0.301 3.699 28 O -0.447 6.447 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.246 0.754 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.855 -17.879 9.364 32.800 hybrid contribution -0.790 0.114 -1.451 1.656 sum -26.645 -17.766 7.912 32.987 Atomic orbital electron populations 1.24077 0.94932 1.03371 0.97233 1.23172 0.96724 0.98155 1.02904 1.20529 0.91685 0.96482 0.88455 1.48388 1.11833 1.61859 1.12984 1.22299 0.97653 1.00953 0.80966 1.22871 0.92551 0.99746 1.01140 1.22209 0.90000 1.00114 0.93153 0.88670 1.60039 1.00257 1.22982 1.48170 1.22271 0.88988 0.92935 1.02479 1.21022 0.95481 0.88637 0.90707 0.90771 1.22106 0.98235 0.98394 1.03013 1.45732 1.33676 1.25825 1.29611 1.19897 0.80721 0.81672 0.85366 1.90663 1.38171 1.76001 1.39725 1.23362 1.04502 0.99296 1.00948 1.85445 1.41013 1.27431 1.37693 1.23229 1.20719 1.13423 1.12141 0.90352 1.26122 0.93973 0.98513 1.00532 1.70183 1.18863 1.27910 1.37694 0.84905 0.78618 0.77411 0.76992 1.18348 1.19645 1.19809 1.21373 0.82243 0.75989 0.90300 1.90659 1.69052 1.46448 1.38536 0.86599 0.87392 0.89197 0.87387 0.91488 0.88482 0.89196 0.86072 0.89247 0.82079 0.90527 0.91129 0.94352 0.89276 0.91785 0.75440 0.87913 0.88171 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 14.32 67.79 0.97 -0.34 16 2 C -0.19 -2.45 9.85 25.66 0.25 -2.20 16 3 C 0.15 2.07 6.37 85.63 0.55 2.62 16 4 N -0.62 -9.09 2.92 -822.32 -2.40 -11.49 16 5 C 0.10 0.70 7.35 86.83 0.64 1.34 16 6 C -0.13 -0.85 6.62 31.65 0.21 -0.64 16 7 C 0.06 0.79 3.24 44.91 0.15 0.93 16 8 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 9 N -0.68 -11.60 6.02 -491.58 -2.96 -14.56 16 10 C 0.06 1.12 5.04 86.30 0.44 1.56 16 11 C 0.15 3.49 2.81 44.99 0.13 3.61 16 12 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 13 C -0.16 -3.62 9.48 71.98 0.68 -2.94 16 14 N -0.70 -20.39 4.80 -442.54 -2.12 -22.52 16 15 C 0.54 21.31 7.81 87.66 0.68 21.99 16 16 O -0.57 -26.99 15.52 -3.02 -0.05 -27.04 16 17 C -0.13 -5.61 6.16 71.24 0.44 -5.18 16 18 S -0.14 -8.23 20.57 -56.49 -1.16 -9.39 16 19 C -0.55 -32.41 9.50 67.95 0.65 -31.77 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.78 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.57 16 23 Si 1.00 44.82 29.55 68.60 2.03 46.85 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.51 10.63 7.64 87.90 0.67 11.30 16 28 O -0.57 -16.91 16.52 -3.03 -0.05 -16.96 16 29 H 0.12 0.57 7.84 -2.91 -0.02 0.55 16 30 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.09 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.11 0.90 7.79 -2.39 -0.02 0.89 16 33 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 34 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.36 5.41 8.46 -89.70 -0.76 4.65 16 39 H 0.08 1.66 7.12 -2.39 -0.02 1.64 16 40 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.41 11.13 8.60 -92.71 -0.80 10.34 16 45 H 0.10 4.13 8.14 -2.40 -0.02 4.11 16 46 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 47 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -84.25 408.87 -0.10 -84.35 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.58 Total: 25.81 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.91 Total: 1.53 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -7.20 Total: -105.14 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.10 Total: -44.00 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -84.25 -0.10 -84.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716386835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.940 kcal (2) G-P(sol) polarization free energy of solvation -84.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds