Wall clock time and date at job start Wed Apr 1 2020 00:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00099 * 2 1 4 4 N 1.46506 * 109.46851 * 124.99965 * 3 2 1 5 5 C 1.46761 * 124.34925 * 269.72715 * 4 3 2 6 6 C 1.54660 * 105.37950 * 162.85920 * 5 4 3 7 7 C 1.54628 * 101.68669 * 25.76502 * 6 5 4 8 8 H 1.08992 * 110.48524 * 93.66834 * 7 6 5 9 9 N 1.46901 * 110.48534 * 216.31226 * 7 6 5 10 10 C 1.46901 * 110.99977 * 201.22837 * 9 7 6 11 11 C 1.52998 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46790 * 65.00052 * 11 10 9 13 13 C 1.53003 * 109.47210 * 185.00133 * 11 10 9 14 14 N 1.46503 * 109.46885 * 304.99977 * 11 10 9 15 15 C 1.34784 * 119.99410 * 155.00124 * 14 11 10 16 16 O 1.21276 * 120.00151 * 0.02562 * 15 14 11 17 17 C 1.50701 * 119.99338 * 180.02562 * 15 14 11 18 18 S 1.81004 * 109.46537 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99743 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99923 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99907 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99838 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46787 * 60.00527 * 23 21 19 25 25 H 1.48501 * 109.46659 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47044 * 300.00284 * 23 21 19 27 27 C 1.34412 * 124.34671 * 90.03187 * 4 3 2 28 28 O 1.21287 * 124.94539 * 0.42073 * 27 4 3 29 29 H 1.07996 * 120.00322 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00421 * 179.97438 * 1 2 3 31 31 H 1.08009 * 120.00149 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.46872 * 5.00498 * 3 2 1 33 33 H 1.08997 * 109.47234 * 245.00050 * 3 2 1 34 34 H 1.08999 * 110.24579 * 281.98491 * 5 4 3 35 35 H 1.08994 * 110.24698 * 43.98230 * 5 4 3 36 36 H 1.09003 * 111.19203 * 267.58870 * 6 5 4 37 37 H 1.09002 * 110.85587 * 143.79210 * 6 5 4 38 38 H 1.00907 * 111.00107 * 325.17987 * 9 7 6 39 39 H 1.08993 * 109.47077 * 300.00574 * 10 9 7 40 40 H 1.09011 * 109.47083 * 59.99845 * 10 9 7 41 41 H 1.08994 * 109.47366 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.46640 * 300.00134 * 13 11 10 43 43 H 1.09007 * 109.46910 * 59.99879 * 13 11 10 44 44 H 0.96994 * 120.00698 * 334.99602 * 14 11 10 45 45 H 1.08995 * 109.47097 * 299.99453 * 17 15 14 46 46 H 1.08996 * 109.47313 * 60.00419 * 17 15 14 47 47 H 0.97002 * 120.00172 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.6617 1.8485 2.4644 6 6 3.7493 1.2815 3.4067 7 6 4.9269 1.0614 2.4291 8 1 5.5854 1.9298 2.4234 9 7 5.6749 -0.1503 2.7899 10 6 7.0341 -0.1151 2.2337 11 6 7.7807 -1.3903 2.6303 12 1 7.3011 -2.2516 2.1653 13 6 9.2332 -1.2987 2.1581 14 7 7.7495 -1.5414 4.0872 15 6 7.8709 -2.7644 4.6405 16 8 8.0066 -3.7396 3.9325 17 6 7.8382 -2.9198 6.1392 18 16 8.0248 -4.6682 6.5684 19 6 7.9524 -4.5612 8.3257 20 1 7.8259 -3.6009 8.8035 21 6 8.0579 -5.7110 9.0960 22 7 8.2126 -6.8813 8.5137 23 14 7.9818 -5.5974 10.9590 24 1 6.6797 -5.0110 11.3664 25 1 8.1181 -6.9557 11.5437 26 1 9.0876 -4.7353 11.4479 27 6 4.2627 0.8917 1.0805 28 8 4.7976 0.4264 0.0964 29 1 -0.5400 0.9352 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6212 1.4026 -0.9313 34 1 2.6896 2.9381 2.4643 35 1 1.6771 1.4957 2.7712 36 1 3.4315 0.3393 3.8532 37 1 4.0120 2.0068 4.1768 38 1 5.6970 -0.2771 3.7907 39 1 6.9804 -0.0480 1.1472 40 1 7.5647 0.7529 2.6254 41 1 9.7649 -2.2074 2.4402 42 1 9.2564 -1.1863 1.0741 43 1 9.7128 -0.4373 2.6231 44 1 7.6414 -0.7614 4.6535 45 1 8.6541 -2.3483 6.5816 46 1 6.8867 -2.5509 6.5220 47 1 8.2860 -7.6850 9.0520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716386836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:29 Heat of formation + Delta-G solvation = -44.348438 kcal Electronic energy + Delta-G solvation = -26874.793732 eV Core-core repulsion = 22991.402246 eV Total energy + Delta-G solvation = -3883.391486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86967 -39.36757 -36.96831 -36.75492 -35.33812 -33.76293 -32.41515 -31.59802 -30.55644 -28.50282 -27.43174 -26.58590 -25.46861 -24.48793 -22.40353 -21.34961 -20.68620 -20.24627 -19.43014 -17.86893 -17.31237 -17.16258 -16.46207 -16.11330 -15.81217 -15.48976 -15.19966 -14.94533 -14.79543 -14.62069 -14.17797 -14.04292 -13.76600 -13.54717 -13.25663 -13.03128 -12.97892 -12.78600 -12.60883 -12.50079 -12.40034 -12.21398 -11.90024 -11.71509 -11.55058 -11.44646 -11.03452 -11.03231 -10.92424 -10.75242 -10.20470 -9.89065 -9.80483 -9.31844 -9.11751 -9.05076 -8.86631 -8.71229 -8.21015 -6.47630 -6.19956 -3.90284 1.70323 2.32194 2.76320 3.06522 3.16552 3.23798 3.28190 3.32001 3.68317 3.80522 3.88129 4.07165 4.21857 4.43350 4.54419 4.57163 4.64826 4.77530 4.89795 5.00716 5.03188 5.04450 5.14851 5.18901 5.20303 5.29769 5.34446 5.43532 5.50440 5.54211 5.61258 5.64853 5.75197 5.91165 6.00844 6.14526 6.15213 6.20139 6.21713 6.35309 6.57699 6.72293 6.75423 7.01380 7.60223 7.75074 7.92579 8.36174 8.68804 9.24963 10.87358 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002128 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.552699 B =13154.744640 C =14127.838061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.154 3.846 4 N -0.619 5.619 5 C 0.107 3.893 6 C -0.136 4.136 7 C 0.055 3.945 8 H 0.082 0.918 9 N -0.666 5.666 10 C 0.052 3.948 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.162 4.162 14 N -0.735 5.735 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.530 3.470 28 O -0.517 6.517 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.351 0.649 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.391 0.609 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 24.256 -13.401 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.033 3.967 4 N -0.355 5.355 5 C -0.017 4.017 6 C -0.174 4.174 7 C -0.059 4.059 8 H 0.100 0.900 9 N -0.301 5.301 10 C -0.077 4.077 11 C 0.041 3.959 12 H 0.115 0.885 13 C -0.221 4.221 14 N -0.390 5.390 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.316 3.684 28 O -0.391 6.391 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.225 0.775 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.842 21.795 -15.682 29.345 hybrid contribution 0.039 2.216 2.941 3.682 sum -11.802 24.010 -12.741 29.633 Atomic orbital electron populations 1.23877 0.95633 1.02116 1.00119 1.23367 0.96198 0.99273 1.00125 1.20454 0.91596 0.95409 0.89276 1.48207 1.12434 1.62851 1.11963 1.22069 0.99588 0.98568 0.81442 1.22881 0.93852 1.03479 0.97215 1.22172 0.95805 0.93677 0.94233 0.90038 1.60123 1.15853 1.35904 1.18190 1.22436 0.87082 0.96133 1.02074 1.20916 0.95483 0.98511 0.80986 0.88532 1.22153 0.96103 1.02674 1.01201 1.46071 1.76992 1.09017 1.06883 1.20254 0.75152 0.82455 0.90123 1.90705 1.46807 1.37956 1.63268 1.23530 1.04771 1.08253 0.93834 1.85434 1.95334 0.96566 1.05919 1.22826 1.58121 0.96195 0.91287 0.91042 1.24991 0.94591 0.94520 0.99499 1.70007 1.46118 0.98061 1.36066 0.86234 0.78744 0.77445 0.83122 1.19962 1.20826 1.19977 1.20747 0.81591 0.76187 0.89879 1.90699 1.67897 1.43658 1.36799 0.88489 0.88105 0.86942 0.89954 0.89165 0.90931 0.90091 0.88561 0.88902 0.82771 0.88451 0.94691 0.91360 0.91720 0.92742 0.77543 0.89412 0.89343 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.32 29.02 0.42 -0.69 16 2 C -0.17 -1.34 9.85 -36.02 -0.35 -1.69 16 3 C 0.15 1.09 6.37 -5.19 -0.03 1.06 16 4 N -0.62 -4.97 2.91 -173.67 -0.51 -5.47 16 5 C 0.11 0.52 7.36 -3.03 -0.02 0.50 16 6 C -0.14 -0.71 6.63 -25.00 -0.17 -0.87 16 7 C 0.05 0.44 3.24 -67.72 -0.22 0.22 16 8 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 9 N -0.67 -6.54 6.29 -106.74 -0.67 -7.22 16 10 C 0.05 0.52 5.10 -3.82 -0.02 0.50 16 11 C 0.15 1.82 2.88 -67.93 -0.20 1.63 16 12 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 13 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 14 N -0.74 -9.56 4.36 -53.80 -0.23 -9.80 16 15 C 0.53 9.88 7.81 -10.98 -0.09 9.80 16 16 O -0.51 -11.79 15.52 5.56 0.09 -11.70 16 17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.53 5.75 7.64 -10.86 -0.08 5.66 16 28 O -0.52 -7.66 16.51 5.55 0.09 -7.57 16 29 H 0.10 0.44 7.84 -52.49 -0.41 0.02 16 30 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.08 0.37 7.79 -51.93 -0.40 -0.03 16 33 H 0.09 0.72 7.92 -51.93 -0.41 0.31 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.35 3.07 7.31 -39.29 -0.29 2.79 16 39 H 0.10 1.13 7.12 -51.93 -0.37 0.76 16 40 H 0.03 0.28 8.08 -51.92 -0.42 -0.14 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.39 3.81 8.15 -40.82 -0.33 3.47 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -37.20 407.22 -9.22 -46.42 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.63 Total: 3.39 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.01 Total: -1.19 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.68 Total: -47.99 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.20 -9.22 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716386836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.072 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds