Wall clock time and date at job start Wed Apr 1 2020 00:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00099 * 2 1 4 4 N 1.46506 * 109.46851 * 124.99965 * 3 2 1 5 5 C 1.46761 * 124.34925 * 269.72715 * 4 3 2 6 6 C 1.54660 * 105.37950 * 162.85920 * 5 4 3 7 7 C 1.54628 * 101.68669 * 25.76502 * 6 5 4 8 8 H 1.08992 * 110.48524 * 93.66834 * 7 6 5 9 9 N 1.46901 * 110.48534 * 216.31226 * 7 6 5 10 10 C 1.46901 * 110.99977 * 201.22837 * 9 7 6 11 11 C 1.52998 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46790 * 65.00052 * 11 10 9 13 13 C 1.53003 * 109.47210 * 185.00133 * 11 10 9 14 14 N 1.46503 * 109.46885 * 304.99977 * 11 10 9 15 15 C 1.34784 * 119.99410 * 155.00124 * 14 11 10 16 16 O 1.21276 * 120.00151 * 0.02562 * 15 14 11 17 17 C 1.50701 * 119.99338 * 180.02562 * 15 14 11 18 18 S 1.81004 * 109.46537 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99743 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99923 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99907 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99838 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46787 * 60.00527 * 23 21 19 25 25 H 1.48501 * 109.46659 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47044 * 300.00284 * 23 21 19 27 27 C 1.34412 * 124.34671 * 90.03187 * 4 3 2 28 28 O 1.21287 * 124.94539 * 0.42073 * 27 4 3 29 29 H 1.07996 * 120.00322 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00421 * 179.97438 * 1 2 3 31 31 H 1.08009 * 120.00149 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.46872 * 5.00498 * 3 2 1 33 33 H 1.08997 * 109.47234 * 245.00050 * 3 2 1 34 34 H 1.08999 * 110.24579 * 281.98491 * 5 4 3 35 35 H 1.08994 * 110.24698 * 43.98230 * 5 4 3 36 36 H 1.09003 * 111.19203 * 267.58870 * 6 5 4 37 37 H 1.09002 * 110.85587 * 143.79210 * 6 5 4 38 38 H 1.00907 * 111.00107 * 325.17987 * 9 7 6 39 39 H 1.08993 * 109.47077 * 300.00574 * 10 9 7 40 40 H 1.09011 * 109.47083 * 59.99845 * 10 9 7 41 41 H 1.08994 * 109.47366 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.46640 * 300.00134 * 13 11 10 43 43 H 1.09007 * 109.46910 * 59.99879 * 13 11 10 44 44 H 0.96994 * 120.00698 * 334.99602 * 14 11 10 45 45 H 1.08995 * 109.47097 * 299.99453 * 17 15 14 46 46 H 1.08996 * 109.47313 * 60.00419 * 17 15 14 47 47 H 0.97002 * 120.00172 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.6617 1.8485 2.4644 6 6 3.7493 1.2815 3.4067 7 6 4.9269 1.0614 2.4291 8 1 5.5854 1.9298 2.4234 9 7 5.6749 -0.1503 2.7899 10 6 7.0341 -0.1151 2.2337 11 6 7.7807 -1.3903 2.6303 12 1 7.3011 -2.2516 2.1653 13 6 9.2332 -1.2987 2.1581 14 7 7.7495 -1.5414 4.0872 15 6 7.8709 -2.7644 4.6405 16 8 8.0066 -3.7396 3.9325 17 6 7.8382 -2.9198 6.1392 18 16 8.0248 -4.6682 6.5684 19 6 7.9524 -4.5612 8.3257 20 1 7.8259 -3.6009 8.8035 21 6 8.0579 -5.7110 9.0960 22 7 8.2126 -6.8813 8.5137 23 14 7.9818 -5.5974 10.9590 24 1 6.6797 -5.0110 11.3664 25 1 8.1181 -6.9557 11.5437 26 1 9.0876 -4.7353 11.4479 27 6 4.2627 0.8917 1.0805 28 8 4.7976 0.4264 0.0964 29 1 -0.5400 0.9352 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6212 1.4026 -0.9313 34 1 2.6896 2.9381 2.4643 35 1 1.6771 1.4957 2.7712 36 1 3.4315 0.3393 3.8532 37 1 4.0120 2.0068 4.1768 38 1 5.6970 -0.2771 3.7907 39 1 6.9804 -0.0480 1.1472 40 1 7.5647 0.7529 2.6254 41 1 9.7649 -2.2074 2.4402 42 1 9.2564 -1.1863 1.0741 43 1 9.7128 -0.4373 2.6231 44 1 7.6414 -0.7614 4.6535 45 1 8.6541 -2.3483 6.5816 46 1 6.8867 -2.5509 6.5220 47 1 8.2860 -7.6850 9.0520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716386836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:28 Heat of formation + Delta-G solvation = -72.628432 kcal Electronic energy + Delta-G solvation = -26876.020045 eV Core-core repulsion = 22991.402246 eV Total energy + Delta-G solvation = -3884.617798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54245 -40.73748 -37.97537 -37.52101 -36.13978 -34.60989 -34.55158 -32.76155 -31.27234 -29.94991 -28.06572 -27.63600 -27.19613 -25.26608 -23.06166 -22.38533 -21.54782 -21.27034 -20.08568 -19.84082 -18.05865 -17.89293 -17.74357 -17.26146 -16.85970 -16.57277 -16.37705 -16.24023 -15.94423 -15.85957 -15.36213 -14.81367 -14.67897 -14.56827 -14.46981 -14.17663 -13.96366 -13.87055 -13.57003 -13.24540 -13.14648 -13.10837 -13.06675 -13.03727 -12.84630 -12.59446 -12.45028 -12.28016 -12.05777 -11.81412 -11.70680 -11.10875 -10.97813 -10.88626 -10.46386 -10.23944 -10.12460 -9.73036 -9.42889 -8.64471 -8.32280 -6.10420 1.14151 1.28842 1.45409 1.48854 1.57134 1.58677 1.67673 2.19927 2.27530 2.32043 3.01663 3.05537 3.31823 3.35396 3.59330 3.83529 3.95071 4.01563 4.04316 4.10291 4.11107 4.19953 4.30469 4.38471 4.43449 4.47261 4.53667 4.61093 4.66168 4.72810 4.74090 4.78755 4.96379 4.98667 5.05459 5.12064 5.24337 5.43437 5.46175 5.53529 5.64220 5.78917 5.86984 6.11737 6.21620 6.35450 6.54830 7.08639 7.19554 7.31268 8.76658 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002128 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.552699 B =13154.744640 C =14127.838061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.195 4.195 3 C 0.153 3.847 4 N -0.618 5.618 5 C 0.103 3.897 6 C -0.127 4.127 7 C 0.057 3.943 8 H 0.103 0.897 9 N -0.687 5.687 10 C 0.067 3.933 11 C 0.149 3.851 12 H 0.056 0.944 13 C -0.157 4.157 14 N -0.704 5.704 15 C 0.536 3.464 16 O -0.567 6.567 17 C -0.126 4.126 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 0.999 3.001 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.512 3.488 28 O -0.573 6.573 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.358 0.642 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.414 0.586 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 28.404 -11.194 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.214 4.214 3 C 0.032 3.968 4 N -0.351 5.351 5 C -0.019 4.019 6 C -0.165 4.165 7 C -0.056 4.056 8 H 0.120 0.880 9 N -0.323 5.323 10 C -0.063 4.063 11 C 0.044 3.956 12 H 0.075 0.925 13 C -0.216 4.216 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.445 6.445 17 C -0.278 4.278 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.186 1.186 27 C 0.299 3.701 28 O -0.451 6.451 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.180 0.820 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.251 0.749 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.246 26.032 -13.450 32.156 hybrid contribution 0.361 1.010 2.121 2.377 sum -12.885 27.043 -11.328 32.026 Atomic orbital electron populations 1.24071 0.94846 1.03398 0.97209 1.23216 0.96877 0.98410 1.02928 1.20537 0.91725 0.96047 0.88534 1.48413 1.11683 1.61584 1.13417 1.22362 0.99951 1.00150 0.79449 1.22925 0.92411 1.03895 0.97249 1.22245 0.96729 0.93353 0.93263 0.87995 1.59994 1.15872 1.37794 1.18622 1.22223 0.87430 0.95418 1.01198 1.20910 0.96289 0.98536 0.79861 0.92522 1.22095 0.95026 1.02149 1.02324 1.45718 1.74638 1.07973 1.07544 1.20080 0.74974 0.83340 0.89402 1.90699 1.49625 1.40101 1.64051 1.23356 1.06871 1.02568 0.94962 1.85683 1.95786 1.04301 1.07235 1.23174 1.57866 0.96969 0.91178 0.89699 1.26161 0.93834 0.93938 1.05435 1.70190 1.47439 0.99026 1.38283 0.84993 0.79545 0.77674 0.75711 1.18478 1.20636 1.18595 1.21440 0.82624 0.75641 0.90396 1.90660 1.69338 1.46307 1.38833 0.85836 0.88055 0.90369 0.86551 0.91013 0.88061 0.89023 0.89772 0.85565 0.82001 0.90123 0.91416 0.94432 0.90460 0.90193 0.74912 0.87146 0.86886 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 14.32 67.79 0.97 -0.73 16 2 C -0.19 -3.10 9.85 25.66 0.25 -2.84 16 3 C 0.15 2.06 6.37 85.63 0.55 2.61 16 4 N -0.62 -9.19 2.91 -821.97 -2.40 -11.59 16 5 C 0.10 0.67 7.36 86.90 0.64 1.31 16 6 C -0.13 -0.90 6.63 31.71 0.21 -0.69 16 7 C 0.06 0.79 3.24 44.91 0.15 0.94 16 8 H 0.10 1.01 7.88 -2.39 -0.02 1.00 16 9 N -0.69 -12.58 6.29 -491.61 -3.09 -15.67 16 10 C 0.07 1.24 5.10 86.30 0.44 1.68 16 11 C 0.15 3.68 2.88 44.99 0.13 3.81 16 12 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 13 C -0.16 -3.58 9.48 71.98 0.68 -2.90 16 14 N -0.70 -17.32 4.36 -442.52 -1.93 -19.25 16 15 C 0.54 19.80 7.81 87.66 0.68 20.48 16 16 O -0.57 -27.17 15.52 -3.02 -0.05 -27.22 16 17 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 18 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 19 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.62 5.49 84.86 0.47 1.08 16 22 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 27 C 0.51 11.04 7.64 87.90 0.67 11.71 16 28 O -0.57 -17.98 16.51 -3.05 -0.05 -18.03 16 29 H 0.12 0.70 7.84 -2.91 -0.02 0.68 16 30 H 0.10 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.08 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.12 0.74 7.79 -2.39 -0.02 0.72 16 33 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 34 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 37 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.36 5.42 7.31 -89.69 -0.66 4.77 16 39 H 0.08 1.87 7.12 -2.39 -0.02 1.85 16 40 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.41 6.67 8.15 -92.71 -0.76 5.91 16 45 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 46 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -88.19 407.22 0.12 -88.06 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.44 Total: 22.72 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 6.92 Total: 1.78 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -7.13 Total: -102.72 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.10 Total: -45.24 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -88.19 0.12 -88.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716386836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.436 kcal (2) G-P(sol) polarization free energy of solvation -88.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds