Wall clock time and date at job start Wed Apr 1 2020 00:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99809 * 2 1 4 4 N 1.46503 * 109.47263 * 124.99549 * 3 2 1 5 5 C 1.34771 * 120.00134 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99726 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00194 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.47401 * 180.02562 * 7 5 4 9 9 C 1.47954 * 110.99809 * 190.00359 * 8 7 5 10 10 C 1.53937 * 86.17651 * 222.41311 * 9 8 7 11 11 C 1.53010 * 113.73529 * 138.07900 * 10 9 8 12 12 H 1.08997 * 109.46815 * 300.00658 * 11 10 9 13 13 C 1.53003 * 109.46752 * 59.99680 * 11 10 9 14 14 N 1.46496 * 109.47076 * 179.97438 * 11 10 9 15 15 C 1.34774 * 119.99544 * 155.00017 * 14 11 10 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 11 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47409 * 89.99815 * 23 21 19 25 25 H 1.48504 * 109.46732 * 209.99538 * 23 21 19 26 26 H 1.48503 * 109.47095 * 329.99265 * 23 21 19 27 27 C 1.47956 * 111.00087 * 90.63869 * 8 7 5 28 28 H 1.08001 * 119.99742 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00329 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47073 * 4.99702 * 3 2 1 32 32 H 1.08996 * 109.46856 * 244.99478 * 3 2 1 33 33 H 0.97007 * 119.99813 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.46827 * 60.00166 * 7 5 4 35 35 H 1.09008 * 109.47045 * 300.00758 * 7 5 4 36 36 H 1.08999 * 113.76592 * 108.09930 * 9 8 7 37 37 H 1.08997 * 113.76130 * 336.72704 * 9 8 7 38 38 H 1.09001 * 113.73537 * 269.24901 * 10 9 8 39 39 H 1.08992 * 109.47534 * 300.00312 * 13 11 10 40 40 H 1.09005 * 109.46941 * 60.00853 * 13 11 10 41 41 H 1.08997 * 109.46755 * 180.02562 * 13 11 10 42 42 H 0.96994 * 120.00700 * 335.00136 * 14 11 10 43 43 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 44 44 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 45 45 H 0.97001 * 119.99701 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.76293 * 23.26968 * 27 8 7 47 47 H 1.09003 * 113.75654 * 251.89906 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 3.7789 2.4088 1.3329 6 8 3.7150 3.3556 0.5777 7 6 4.7361 2.4362 2.4965 8 7 5.4705 3.7085 2.4966 9 6 6.5818 3.6791 3.4729 10 6 6.1508 5.1078 3.8509 11 6 6.1645 5.3770 5.3570 12 1 5.4808 4.6897 5.8552 13 6 7.5802 5.1703 5.8992 14 7 5.7416 6.7566 5.6103 15 6 5.1960 7.0868 6.7976 16 8 5.0555 6.2422 7.6565 17 6 4.7604 8.5059 7.0580 18 16 4.0724 8.6290 8.7277 19 6 3.6580 10.3412 8.7623 20 1 3.8536 10.9618 7.9002 21 6 3.0812 10.8929 9.8978 22 7 2.8432 10.1367 10.9487 23 14 2.6413 12.7079 9.9342 24 1 1.2521 12.8906 9.4423 25 1 2.7439 13.2142 11.3265 26 1 3.5781 13.4619 9.0630 27 6 4.7636 4.7287 3.3019 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4026 -0.9313 33 1 3.0450 0.5746 1.7353 34 1 5.4409 1.6095 2.4067 35 1 4.1785 2.3388 3.4281 36 1 7.5688 3.6252 3.0136 37 1 6.4438 2.9525 4.2736 38 1 6.6549 5.8846 3.2760 39 1 7.8953 4.1441 5.7107 40 1 8.2640 5.8577 5.4010 41 1 7.5898 5.3617 6.9722 42 1 5.8542 7.4323 4.9236 43 1 5.6188 9.1717 6.9684 44 1 4.0010 8.7922 6.3304 45 1 2.4398 10.5222 11.7421 46 1 4.0939 4.3091 4.0525 47 1 4.2978 5.5134 2.7056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717541969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:51 Heat of formation + Delta-G solvation = -17.580750 kcal Electronic energy + Delta-G solvation = -26180.246617 eV Core-core repulsion = 22298.015866 eV Total energy + Delta-G solvation = -3882.230752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88945 -39.64012 -38.82569 -36.17687 -35.14760 -33.25613 -32.42205 -31.85420 -30.24613 -28.50039 -27.09854 -26.29874 -25.47536 -24.87561 -22.24772 -21.06002 -20.48354 -20.20720 -19.75781 -17.87285 -17.44143 -16.93681 -16.65081 -16.35422 -15.99639 -15.63219 -15.33924 -14.91975 -14.80346 -14.76696 -14.22578 -14.13059 -13.86879 -13.54472 -13.32595 -13.18531 -13.07546 -12.76016 -12.73155 -12.58272 -12.09714 -11.95877 -11.80225 -11.69262 -11.16120 -11.06042 -11.01675 -10.96610 -10.89251 -10.74014 -10.43033 -9.96942 -9.80542 -9.42657 -9.38582 -9.18597 -9.05957 -8.81665 -8.22908 -6.49097 -6.21123 -3.91395 1.53052 2.36156 2.81375 3.03260 3.11002 3.23078 3.28463 3.32584 3.61568 3.69917 4.13826 4.21367 4.24153 4.36475 4.47345 4.53463 4.68229 4.83025 4.90380 4.96448 5.04908 5.07376 5.14149 5.18847 5.24234 5.26967 5.28669 5.32190 5.39692 5.54784 5.61297 5.69636 5.81290 5.90347 5.91020 5.92232 5.97462 6.05615 6.15553 6.16231 6.21241 6.55465 6.69381 7.12473 7.60487 7.74274 7.93447 8.36057 8.63621 9.24407 10.86313 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.001824 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.257746 B =15348.535879 C =16701.472156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.148 3.852 4 N -0.735 5.735 5 C 0.514 3.486 6 O -0.517 6.517 7 C -0.001 4.001 8 N -0.459 5.459 9 C 0.013 3.987 10 C -0.121 4.121 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.733 5.733 15 C 0.534 3.466 16 O -0.520 6.520 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.012 3.988 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.400 0.600 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -20.975 -21.375 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.389 5.389 5 C 0.300 3.700 6 O -0.390 6.390 7 C -0.133 4.133 8 N -0.181 5.181 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.221 4.221 14 N -0.387 5.387 15 C 0.320 3.680 16 O -0.394 6.394 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.117 4.117 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.825 -21.583 -21.018 30.368 hybrid contribution -0.353 1.692 -0.227 1.744 sum 3.472 -19.891 -21.246 29.310 Atomic orbital electron populations 1.24022 0.95814 1.02572 0.97732 1.22995 0.96253 0.98042 1.02457 1.20380 0.91798 0.95571 0.89808 1.46012 1.41487 1.20280 1.31120 1.20548 0.80723 0.82236 0.86515 1.90726 1.66969 1.34936 1.46392 1.22610 0.97423 0.96413 0.96820 1.68405 1.06089 1.04304 1.39344 1.23994 0.97196 0.96164 0.94258 1.23268 0.97293 0.98123 0.95344 1.20900 0.96523 0.84590 0.93300 0.89604 1.22163 0.96019 1.01550 1.02397 1.46058 1.65018 1.10637 1.16970 1.20298 0.76106 0.90351 0.81246 1.90688 1.53680 1.50957 1.44078 1.23541 1.04312 0.95085 1.07528 1.85364 1.78159 1.12849 1.07063 1.22877 1.47504 0.94432 1.03534 0.90925 1.24990 0.94978 0.99008 0.94610 1.70020 1.40623 1.35821 1.03867 0.86170 0.78875 0.82912 0.77561 1.20276 1.20756 1.19689 1.24112 0.95827 0.96322 0.95390 0.87798 0.88067 0.86692 0.91080 0.90695 0.76585 0.87907 0.90645 0.88679 0.90659 0.87556 0.91945 0.92395 0.91618 0.76779 0.89238 0.89241 0.92210 0.90866 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 14.32 29.01 0.42 -0.30 16 2 C -0.18 -0.83 9.63 -36.02 -0.35 -1.18 16 3 C 0.15 0.99 6.11 -5.19 -0.03 0.96 16 4 N -0.73 -4.88 5.55 -61.47 -0.34 -5.22 16 5 C 0.51 4.98 7.87 -10.99 -0.09 4.89 16 6 O -0.52 -7.36 16.43 5.55 0.09 -7.27 16 7 C 0.00 -0.01 5.28 -4.98 -0.03 -0.03 16 8 N -0.46 -4.30 5.65 -239.78 -1.35 -5.66 16 9 C 0.01 0.09 6.57 -2.77 -0.02 0.08 16 10 C -0.12 -1.04 3.49 -89.68 -0.31 -1.35 16 11 C 0.15 1.66 2.42 -67.93 -0.16 1.50 16 12 H 0.09 1.10 7.37 -51.93 -0.38 0.71 16 13 C -0.16 -1.66 9.29 37.16 0.35 -1.32 16 14 N -0.73 -9.44 5.08 -53.80 -0.27 -9.71 16 15 C 0.53 9.73 7.81 -10.98 -0.09 9.65 16 16 O -0.52 -11.50 15.53 5.56 0.09 -11.41 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.01 0.12 7.51 -2.77 -0.02 0.10 16 28 H 0.10 0.33 8.06 -52.49 -0.42 -0.09 16 29 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 30 H 0.12 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 1.52 8.46 -40.82 -0.35 1.17 16 34 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.08 0.47 7.38 -51.92 -0.38 0.08 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.50 7.43 -51.93 -0.39 0.12 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -37.39 409.81 -9.67 -47.07 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.64 Total: 1.78 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 0.09 Total: -2.88 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -1.24 Total: -46.06 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.39 -9.67 -47.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds