Wall clock time and date at job start Wed Apr 1 2020 00:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99996 * 2 1 4 4 N 1.46503 * 109.46758 * 125.00351 * 3 2 1 5 5 C 1.34772 * 119.99571 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00123 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99913 * 179.97438 * 5 4 3 8 8 N 1.46896 * 109.47130 * 179.97438 * 7 5 4 9 9 C 1.47960 * 111.00180 * 189.99773 * 8 7 5 10 10 C 1.53936 * 86.18334 * 222.42179 * 9 8 7 11 11 C 1.53000 * 113.73114 * 138.08090 * 10 9 8 12 12 H 1.09000 * 109.47064 * 305.00061 * 11 10 9 13 13 C 1.52997 * 109.46551 * 185.00210 * 11 10 9 14 14 N 1.46497 * 109.47122 * 65.00285 * 11 10 9 15 15 C 1.34779 * 119.99814 * 204.99899 * 14 11 10 16 16 O 1.21277 * 119.99947 * 359.97438 * 15 14 11 17 17 C 1.50704 * 119.99947 * 180.02562 * 15 14 11 18 18 S 1.80998 * 109.46906 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99829 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99635 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00528 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99511 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46813 * 90.00294 * 23 21 19 25 25 H 1.48496 * 109.47069 * 210.00054 * 23 21 19 26 26 H 1.48496 * 109.47292 * 330.00009 * 23 21 19 27 27 C 1.47964 * 110.99673 * 90.64197 * 8 7 5 28 28 H 1.07999 * 120.00392 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00211 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99851 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46850 * 5.00383 * 3 2 1 32 32 H 1.09002 * 109.46766 * 245.00000 * 3 2 1 33 33 H 0.97000 * 120.00181 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46742 * 59.99684 * 7 5 4 35 35 H 1.08998 * 109.46831 * 300.00194 * 7 5 4 36 36 H 1.09005 * 113.75898 * 108.09901 * 9 8 7 37 37 H 1.09003 * 113.86036 * 336.75531 * 9 8 7 38 38 H 1.09003 * 113.72733 * 269.25645 * 10 9 8 39 39 H 1.09007 * 109.47194 * 300.04475 * 13 11 10 40 40 H 1.08992 * 109.47477 * 60.05156 * 13 11 10 41 41 H 1.09001 * 109.46779 * 180.02562 * 13 11 10 42 42 H 0.97004 * 120.00174 * 24.99849 * 14 11 10 43 43 H 1.09002 * 109.46965 * 299.99524 * 17 15 14 44 44 H 1.08999 * 109.47385 * 59.99500 * 17 15 14 45 45 H 0.96998 * 120.00409 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.75920 * 23.26357 * 27 8 7 47 47 H 1.09003 * 113.75945 * 251.89731 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3334 6 8 3.7144 3.3559 0.5783 7 6 4.7349 2.4367 2.4976 8 7 5.4694 3.7088 2.4976 9 6 6.5801 3.6798 3.4747 10 6 6.1491 5.1087 3.8518 11 6 6.1619 5.3784 5.3578 12 1 5.5470 4.6351 5.8653 13 6 5.6017 6.7758 5.6303 14 7 7.5369 5.2976 5.8567 15 6 7.7680 4.9970 7.1501 16 8 6.8376 4.7938 7.9009 17 6 9.1825 4.9145 7.6634 18 16 9.1618 4.4966 9.4244 19 6 10.8928 4.4661 9.7520 20 1 11.5961 4.6735 8.9591 21 6 11.3523 4.1764 11.0292 22 7 10.4951 3.9241 11.9957 23 14 13.1875 4.1448 11.3767 24 1 13.6362 5.4983 11.7911 25 1 13.4685 3.1752 12.4657 26 1 13.9167 3.7357 10.1494 27 6 4.7621 4.7295 3.3021 28 1 -0.5401 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.0446 0.5746 1.7355 34 1 5.4400 1.6103 2.4082 35 1 4.1768 2.3389 3.4288 36 1 7.5674 3.6256 3.0158 37 1 6.4434 2.9538 4.2762 38 1 6.6535 5.8852 3.2768 39 1 6.2162 7.5190 5.1221 40 1 4.5784 6.8356 5.2600 41 1 5.6113 6.9681 6.7032 42 1 8.2811 5.4605 5.2562 43 1 9.7243 4.1450 7.1134 44 1 9.6762 5.8762 7.5243 45 1 10.8162 3.7221 12.8884 46 1 4.0919 4.3102 4.0524 47 1 4.2968 5.5140 2.7053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717541970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:54 Heat of formation + Delta-G solvation = -18.234836 kcal Electronic energy + Delta-G solvation = -26147.209286 eV Core-core repulsion = 22264.950171 eV Total energy + Delta-G solvation = -3882.259115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88501 -39.65778 -38.81847 -36.19687 -35.15115 -33.27363 -32.43832 -31.83761 -30.28719 -28.51752 -27.02963 -26.33542 -25.49355 -24.91202 -22.16285 -21.07638 -20.45845 -20.21370 -19.85658 -17.88858 -17.49086 -16.91681 -16.47846 -16.39725 -16.12531 -15.74972 -15.17611 -14.94955 -14.84608 -14.81095 -14.22520 -14.14331 -13.88613 -13.48599 -13.36127 -13.16254 -13.08222 -12.80181 -12.72141 -12.61960 -12.14381 -11.93728 -11.72400 -11.65222 -11.23361 -11.07167 -11.04488 -11.00501 -10.85440 -10.75653 -10.44959 -9.98414 -9.82124 -9.44579 -9.39959 -9.16968 -9.07495 -8.84275 -8.24563 -6.50882 -6.22634 -3.93147 1.50692 2.34444 2.80777 3.00733 3.09304 3.21711 3.27107 3.30904 3.63273 3.66095 4.19659 4.20142 4.21177 4.31758 4.50238 4.52807 4.68530 4.85252 4.90810 4.98878 5.01977 5.10222 5.12659 5.16443 5.21181 5.24494 5.29813 5.34984 5.44428 5.52085 5.58186 5.70322 5.84736 5.88742 5.89317 5.91818 5.95124 6.05331 6.13246 6.13961 6.23276 6.55656 6.67667 7.11051 7.58790 7.72885 7.91543 8.34369 8.62066 9.22867 10.84766 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001655 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.169583 B =16918.120595 C =17474.335747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.148 3.852 4 N -0.735 5.735 5 C 0.515 3.485 6 O -0.518 6.518 7 C -0.001 4.001 8 N -0.459 5.459 9 C 0.008 3.992 10 C -0.122 4.122 11 C 0.153 3.847 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.017 3.983 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -4.885 -24.067 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.025 3.975 4 N -0.389 5.389 5 C 0.301 3.699 6 O -0.392 6.392 7 C -0.133 4.133 8 N -0.181 5.181 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.221 4.221 14 N -0.387 5.387 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.112 4.112 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.306 -4.465 -23.884 29.831 hybrid contribution 2.368 -0.489 0.150 2.423 sum -14.938 -4.955 -23.734 28.478 Atomic orbital electron populations 1.24005 0.95799 1.02518 0.97929 1.23010 0.96263 0.98109 1.02270 1.20378 0.91768 0.95510 0.89876 1.46023 1.41488 1.20312 1.31083 1.20563 0.80636 0.82207 0.86510 1.90715 1.66992 1.35042 1.46462 1.22616 0.97460 0.96534 0.96704 1.68408 1.06042 1.04254 1.39368 1.24029 0.97067 0.96671 0.94238 1.23288 0.97630 0.97919 0.95297 1.20892 0.84171 0.98293 0.91932 0.89622 1.22156 1.00717 0.96321 1.02929 1.46043 1.07926 1.73813 1.10896 1.20301 0.91245 0.75257 0.81241 1.90693 1.45224 1.47791 1.55620 1.23537 0.95301 1.05062 1.06536 1.85381 1.09985 1.91112 0.96958 1.22872 0.91626 1.55493 0.98396 0.90933 1.24985 0.98939 0.94532 0.95078 1.70014 1.34198 1.44278 1.01824 0.86175 0.83104 0.78124 0.78144 1.20262 1.20760 1.19697 1.24025 0.95442 0.96431 0.95337 0.88135 0.87796 0.86635 0.91145 0.90679 0.76509 0.87810 0.90632 0.88796 0.90579 0.87540 0.92421 0.91906 0.91634 0.76830 0.89272 0.89250 0.92192 0.90898 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 14.32 29.02 0.42 -0.23 16 2 C -0.18 -0.78 9.63 -36.02 -0.35 -1.13 16 3 C 0.15 0.94 6.11 -5.19 -0.03 0.91 16 4 N -0.73 -4.75 5.55 -61.47 -0.34 -5.10 16 5 C 0.52 4.87 7.87 -10.99 -0.09 4.78 16 6 O -0.52 -7.12 16.43 5.56 0.09 -7.02 16 7 C 0.00 -0.01 5.28 -4.98 -0.03 -0.04 16 8 N -0.46 -4.36 5.65 -239.71 -1.35 -5.72 16 9 C 0.01 0.07 7.38 -2.77 -0.02 0.05 16 10 C -0.12 -1.04 3.35 -89.69 -0.30 -1.34 16 11 C 0.15 1.66 2.29 -67.93 -0.16 1.50 16 12 H 0.09 1.09 7.48 -51.93 -0.39 0.70 16 13 C -0.16 -1.74 9.44 37.16 0.35 -1.39 16 14 N -0.73 -9.11 4.94 -53.81 -0.27 -9.38 16 15 C 0.53 9.50 7.81 -10.98 -0.09 9.41 16 16 O -0.52 -11.33 15.52 5.56 0.09 -11.24 16 17 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.02 0.15 7.41 -2.76 -0.02 0.13 16 28 H 0.10 0.38 7.84 -52.49 -0.41 -0.03 16 29 H 0.10 0.29 8.06 -52.48 -0.42 -0.13 16 30 H 0.12 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.54 8.46 -40.82 -0.35 1.20 16 34 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.08 0.48 7.38 -51.93 -0.38 0.09 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.40 3.89 8.60 -40.82 -0.35 3.54 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.60 7.36 -51.93 -0.38 0.21 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -36.79 411.16 -9.67 -46.45 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.69 Total: 1.65 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 0.11 Total: -2.98 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.23 Total: -45.44 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.79 -9.67 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds