Wall clock time and date at job start Wed Apr 1 2020 00:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99996 * 2 1 4 4 N 1.46503 * 109.46758 * 125.00351 * 3 2 1 5 5 C 1.34772 * 119.99571 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00123 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99913 * 179.97438 * 5 4 3 8 8 N 1.46896 * 109.47130 * 179.97438 * 7 5 4 9 9 C 1.47960 * 111.00180 * 189.99773 * 8 7 5 10 10 C 1.53936 * 86.18334 * 222.42179 * 9 8 7 11 11 C 1.53000 * 113.73114 * 138.08090 * 10 9 8 12 12 H 1.09000 * 109.47064 * 305.00061 * 11 10 9 13 13 C 1.52997 * 109.46551 * 185.00210 * 11 10 9 14 14 N 1.46497 * 109.47122 * 65.00285 * 11 10 9 15 15 C 1.34779 * 119.99814 * 204.99899 * 14 11 10 16 16 O 1.21277 * 119.99947 * 359.97438 * 15 14 11 17 17 C 1.50704 * 119.99947 * 180.02562 * 15 14 11 18 18 S 1.80998 * 109.46906 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99829 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99635 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00528 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99511 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46813 * 90.00294 * 23 21 19 25 25 H 1.48496 * 109.47069 * 210.00054 * 23 21 19 26 26 H 1.48496 * 109.47292 * 330.00009 * 23 21 19 27 27 C 1.47964 * 110.99673 * 90.64197 * 8 7 5 28 28 H 1.07999 * 120.00392 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00211 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99851 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46850 * 5.00383 * 3 2 1 32 32 H 1.09002 * 109.46766 * 245.00000 * 3 2 1 33 33 H 0.97000 * 120.00181 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46742 * 59.99684 * 7 5 4 35 35 H 1.08998 * 109.46831 * 300.00194 * 7 5 4 36 36 H 1.09005 * 113.75898 * 108.09901 * 9 8 7 37 37 H 1.09003 * 113.86036 * 336.75531 * 9 8 7 38 38 H 1.09003 * 113.72733 * 269.25645 * 10 9 8 39 39 H 1.09007 * 109.47194 * 300.04475 * 13 11 10 40 40 H 1.08992 * 109.47477 * 60.05156 * 13 11 10 41 41 H 1.09001 * 109.46779 * 180.02562 * 13 11 10 42 42 H 0.97004 * 120.00174 * 24.99849 * 14 11 10 43 43 H 1.09002 * 109.46965 * 299.99524 * 17 15 14 44 44 H 1.08999 * 109.47385 * 59.99500 * 17 15 14 45 45 H 0.96998 * 120.00409 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.75920 * 23.26357 * 27 8 7 47 47 H 1.09003 * 113.75945 * 251.89731 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3334 6 8 3.7144 3.3559 0.5783 7 6 4.7349 2.4367 2.4976 8 7 5.4694 3.7088 2.4976 9 6 6.5801 3.6798 3.4747 10 6 6.1491 5.1087 3.8518 11 6 6.1619 5.3784 5.3578 12 1 5.5470 4.6351 5.8653 13 6 5.6017 6.7758 5.6303 14 7 7.5369 5.2976 5.8567 15 6 7.7680 4.9970 7.1501 16 8 6.8376 4.7938 7.9009 17 6 9.1825 4.9145 7.6634 18 16 9.1618 4.4966 9.4244 19 6 10.8928 4.4661 9.7520 20 1 11.5961 4.6735 8.9591 21 6 11.3523 4.1764 11.0292 22 7 10.4951 3.9241 11.9957 23 14 13.1875 4.1448 11.3767 24 1 13.6362 5.4983 11.7911 25 1 13.4685 3.1752 12.4657 26 1 13.9167 3.7357 10.1494 27 6 4.7621 4.7295 3.3021 28 1 -0.5401 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.0446 0.5746 1.7355 34 1 5.4400 1.6103 2.4082 35 1 4.1768 2.3389 3.4288 36 1 7.5674 3.6256 3.0158 37 1 6.4434 2.9538 4.2762 38 1 6.6535 5.8852 3.2768 39 1 6.2162 7.5190 5.1221 40 1 4.5784 6.8356 5.2600 41 1 5.6113 6.9681 6.7032 42 1 8.2811 5.4605 5.2562 43 1 9.7243 4.1450 7.1134 44 1 9.6762 5.8762 7.5243 45 1 10.8162 3.7221 12.8884 46 1 4.0919 4.3102 4.0524 47 1 4.2968 5.5140 2.7053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717541970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:53 Heat of formation + Delta-G solvation = -47.295075 kcal Electronic energy + Delta-G solvation = -26148.469432 eV Core-core repulsion = 22264.950171 eV Total energy + Delta-G solvation = -3883.519261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65581 -40.63490 -39.88427 -36.78500 -36.25686 -34.56993 -33.82100 -32.91647 -31.17040 -29.83594 -27.66434 -27.61256 -27.02331 -25.61105 -23.09524 -21.71158 -21.53673 -20.78090 -20.73536 -19.74673 -18.20317 -17.84505 -17.62405 -17.27306 -16.87278 -16.85431 -16.46026 -16.32654 -16.02867 -15.71605 -15.59852 -14.91172 -14.76217 -14.57336 -14.42555 -14.23082 -14.03240 -13.80074 -13.69772 -13.37624 -13.24557 -13.14788 -12.98003 -12.88182 -12.59066 -12.47795 -12.08093 -11.97686 -11.86325 -11.68532 -11.61459 -11.13004 -11.05606 -10.86555 -10.53233 -10.25087 -10.13626 -10.04642 -9.73999 -8.64208 -8.33346 -6.10806 1.15186 1.29007 1.43249 1.48674 1.58963 1.63484 1.67002 2.23888 2.26194 2.31250 2.97606 3.00938 3.32294 3.46349 3.59896 3.80534 3.90308 3.99731 4.07578 4.15046 4.16840 4.27612 4.30391 4.33694 4.40281 4.47356 4.49262 4.54809 4.55198 4.72754 4.75869 4.79047 4.84387 4.98261 5.00665 5.20081 5.26305 5.35492 5.36372 5.43468 5.56591 5.62670 5.75700 5.91322 6.21258 6.56091 6.57679 7.08309 7.26877 7.31077 8.75742 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001655 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.169583 B =16918.120595 C =17474.335747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C 0.147 3.853 4 N -0.721 5.721 5 C 0.512 3.488 6 O -0.568 6.568 7 C 0.000 4.000 8 N -0.478 5.478 9 C 0.012 3.988 10 C -0.107 4.107 11 C 0.156 3.844 12 H 0.068 0.932 13 C -0.160 4.160 14 N -0.706 5.706 15 C 0.537 3.463 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.258 1.258 27 C 0.018 3.982 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.416 0.584 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 -5.414 -25.768 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.024 3.976 4 N -0.375 5.375 5 C 0.299 3.701 6 O -0.446 6.446 7 C -0.132 4.132 8 N -0.200 5.200 9 C -0.116 4.116 10 C -0.127 4.127 11 C 0.051 3.949 12 H 0.086 0.914 13 C -0.218 4.218 14 N -0.360 5.360 15 C 0.323 3.677 16 O -0.444 6.444 17 C -0.282 4.282 18 S 0.076 5.924 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.182 1.182 27 C -0.111 4.111 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.252 0.748 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.208 -5.019 -25.633 30.740 hybrid contribution 1.897 -0.324 0.543 2.000 sum -14.311 -5.343 -25.090 29.374 Atomic orbital electron populations 1.24174 0.95749 1.03194 0.96838 1.22956 0.96338 0.97464 1.03178 1.20367 0.91509 0.96428 0.89329 1.45953 1.40445 1.20033 1.31047 1.20931 0.80776 0.81994 0.86400 1.90691 1.68685 1.36929 1.48305 1.22682 0.97586 0.96417 0.96509 1.68377 1.06676 1.05195 1.39782 1.24026 0.97274 0.96275 0.94023 1.23177 0.97847 0.98512 0.93135 1.20972 0.82592 0.98070 0.93294 0.91361 1.22122 1.02249 0.96369 1.01043 1.45784 1.09561 1.71502 1.09111 1.19998 0.89841 0.75327 0.82549 1.90687 1.46097 1.50337 1.57246 1.23385 0.97250 1.06440 1.01084 1.85552 1.10909 1.91815 1.04097 1.23215 0.91789 1.55371 0.99062 0.89952 1.26096 1.04388 0.93790 0.94753 1.70178 1.36784 1.45437 1.02372 0.84977 0.76365 0.78402 0.78390 1.19411 1.20339 1.18182 1.24013 0.95474 0.96373 0.95255 0.88351 0.86287 0.85221 0.92336 0.91819 0.74782 0.85956 0.89045 0.87941 0.90719 0.86356 0.90966 0.90132 0.94722 0.74752 0.87159 0.87455 0.92033 0.90393 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 14.32 67.79 0.97 -0.08 16 2 C -0.18 -1.35 9.63 25.65 0.25 -1.10 16 3 C 0.15 1.82 6.11 85.63 0.52 2.35 16 4 N -0.72 -8.63 5.55 -466.77 -2.59 -11.22 16 5 C 0.51 9.31 7.87 87.66 0.69 10.00 16 6 O -0.57 -15.71 16.43 -3.04 -0.05 -15.76 16 7 C 0.00 -0.01 5.28 85.56 0.45 0.45 16 8 N -0.48 -8.29 5.65 -912.31 -5.15 -13.45 16 9 C 0.01 0.18 7.38 86.41 0.64 0.82 16 10 C -0.11 -1.60 3.35 -10.15 -0.03 -1.63 16 11 C 0.16 3.14 2.29 44.99 0.10 3.25 16 12 H 0.07 1.69 7.48 -2.39 -0.02 1.67 16 13 C -0.16 -3.21 9.44 71.98 0.68 -2.53 16 14 N -0.71 -16.18 4.94 -442.54 -2.19 -18.37 16 15 C 0.54 18.73 7.81 87.66 0.68 19.41 16 16 O -0.57 -25.11 15.52 -3.02 -0.05 -25.16 16 17 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 18 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 19 C -0.55 -30.85 9.50 67.95 0.65 -30.21 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.54 13.22 21.65 0.29 -55.26 16 23 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 C 0.02 0.29 7.41 86.41 0.64 0.93 16 28 H 0.10 0.67 7.84 -2.91 -0.02 0.65 16 29 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 30 H 0.13 0.61 8.06 -2.91 -0.02 0.58 16 31 H 0.06 0.87 7.79 -2.39 -0.02 0.85 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.42 2.48 8.46 -92.71 -0.78 1.70 16 34 H 0.12 1.21 8.08 -2.39 -0.02 1.19 16 35 H 0.09 0.97 7.38 -2.39 -0.02 0.95 16 36 H 0.10 1.35 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.14 7.88 -2.39 -0.02 1.12 16 38 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.42 6.82 8.60 -92.71 -0.80 6.02 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.08 1.17 7.36 -2.39 -0.02 1.15 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -82.67 411.16 -2.34 -85.01 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.61 Total: 20.01 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 7.14 Total: -1.60 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -9.65 Total: -98.29 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -82.67 -2.34 -85.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.720 kcal (2) G-P(sol) polarization free energy of solvation -82.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds