Wall clock time and date at job start Wed Apr 1 2020 00:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47026 * 2 1 4 4 C 1.50695 * 109.46904 * 239.99835 * 2 1 3 5 5 N 1.34778 * 120.00183 * 60.00127 * 4 2 1 6 6 O 1.21280 * 119.99985 * 239.99838 * 4 2 1 7 7 N 1.46902 * 109.46781 * 120.00019 * 2 1 3 8 8 C 1.46809 * 111.00002 * 314.14099 * 7 2 1 9 9 C 1.53034 * 109.79927 * 172.35307 * 8 7 2 10 10 C 1.53319 * 109.16042 * 61.06675 * 9 8 7 11 11 C 1.52616 * 108.89536 * 304.76566 * 10 9 8 12 12 C 1.52916 * 114.10734 * 280.67649 * 11 10 9 13 13 N 1.47172 * 87.83874 * 220.51329 * 12 11 10 14 14 C 1.34775 * 135.99230 * 206.63016 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99746 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99690 * 22 20 18 24 24 H 1.48494 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48501 * 109.46989 * 330.00246 * 22 20 18 26 26 C 1.47168 * 88.00754 * 26.88981 * 13 12 11 27 27 C 1.47048 * 110.99319 * 189.99979 * 7 2 1 28 28 H 1.09006 * 109.47432 * 59.99985 * 1 2 3 29 29 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47100 * 300.00231 * 1 2 3 31 31 H 0.97005 * 119.99961 * 0.02562 * 5 4 2 32 32 H 0.96994 * 120.00648 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.42517 * 292.45520 * 8 7 2 34 34 H 1.09004 * 109.41658 * 52.32317 * 8 7 2 35 35 H 1.09003 * 109.52301 * 180.96824 * 9 8 7 36 36 H 1.08990 * 109.52138 * 301.09740 * 9 8 7 37 37 H 1.09007 * 109.56558 * 184.94689 * 10 9 8 38 38 H 1.08999 * 109.56883 * 64.59325 * 10 9 8 39 39 H 1.08995 * 113.49259 * 105.76756 * 12 11 10 40 40 H 1.08999 * 113.49408 * 335.25204 * 12 11 10 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.49014 * 87.85597 * 26 13 12 45 45 H 1.09002 * 113.48990 * 218.36473 * 26 13 12 46 46 H 1.08993 * 109.50343 * 63.21945 * 27 7 2 47 47 H 1.08998 * 109.52999 * 303.12815 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 7 2.0196 -0.6925 1.1995 8 6 1.2950 -0.2478 2.3963 9 6 1.6894 -1.1158 3.5934 10 6 3.1937 -0.9668 3.8492 11 6 3.9490 -1.3063 2.5673 12 6 4.0983 -2.8061 2.3090 13 7 5.4733 -2.5352 1.8593 14 6 6.3512 -3.1187 1.0196 15 8 6.0422 -4.1300 0.4258 16 6 7.7167 -2.5138 0.8176 17 16 8.6541 -3.5197 -0.3594 18 6 10.1627 -2.6104 -0.4056 19 1 10.2745 -1.7191 0.1939 20 6 11.2078 -3.0403 -1.2115 21 7 12.3345 -2.3608 -1.2464 22 14 11.0147 -4.5825 -2.2479 23 1 10.4662 -4.2187 -3.5791 24 1 12.3385 -5.2329 -2.4189 25 1 10.0855 -5.5215 -1.5696 26 6 5.4712 -1.3515 2.7338 27 6 3.4699 -0.5091 1.3586 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1493 0.5389 -2.5436 32 1 2.0302 -0.7070 -3.2465 33 1 1.5443 0.7925 2.6054 34 1 0.2223 -0.3357 2.2240 35 1 1.1362 -0.7930 4.4754 36 1 1.4569 -2.1589 3.3793 37 1 3.4981 -1.6482 4.6437 38 1 3.4143 0.0597 4.1420 39 1 3.4476 -3.1776 1.5175 40 1 4.0486 -3.4101 3.2149 41 1 8.2448 -2.4824 1.7707 42 1 7.6115 -1.5016 0.4271 43 1 13.0647 -2.6610 -1.8099 44 1 5.7906 -1.5643 3.7539 45 1 5.9828 -0.4913 2.3018 46 1 3.6886 0.5479 1.5099 47 1 3.9822 -0.8621 0.4636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717626420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:27 Heat of formation + Delta-G solvation = -23.744881 kcal Electronic energy + Delta-G solvation = -28419.626285 eV Core-core repulsion = 24537.128236 eV Total energy + Delta-G solvation = -3882.498048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.20657 -39.83412 -38.22236 -36.95163 -34.24979 -33.55121 -32.38364 -31.05990 -30.45778 -29.04517 -26.30311 -25.88300 -25.49896 -25.18165 -23.76424 -21.70009 -20.14354 -19.35863 -18.49545 -17.79685 -17.58229 -17.09751 -16.48648 -16.16722 -15.69723 -15.45811 -15.21831 -14.86474 -14.82766 -14.53736 -14.33996 -13.89412 -13.82200 -13.54462 -13.37027 -13.01858 -12.76486 -12.69930 -12.65309 -12.43639 -12.14245 -12.01796 -11.92509 -11.57994 -11.31152 -11.20456 -10.95146 -10.79997 -10.75545 -10.51106 -10.29998 -9.89043 -9.81336 -9.78718 -9.26577 -8.94452 -8.57369 -8.43316 -8.40086 -6.83783 -6.23608 -3.93982 2.51026 2.76154 3.04228 3.15381 3.26609 3.38650 3.54396 3.57072 3.67357 4.17001 4.38614 4.39477 4.47390 4.57554 4.61116 4.70086 4.72079 4.80301 4.87532 4.99654 5.06346 5.15091 5.15664 5.19522 5.27908 5.36760 5.40824 5.43660 5.44667 5.58149 5.63059 5.65200 5.72997 5.73810 5.89303 5.98390 6.00797 6.10216 6.12007 6.26562 6.56793 6.68050 6.79251 7.15073 7.99482 8.02838 8.15240 8.46870 8.65660 9.23070 10.85700 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002936 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.352937 B = 9534.622388 C =10638.994703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.067 0.933 4 C 0.513 3.487 5 N -0.860 5.860 6 O -0.505 6.505 7 N -0.514 5.514 8 C 0.049 3.951 9 C -0.114 4.114 10 C -0.103 4.103 11 C -0.090 4.090 12 C 0.124 3.876 13 N -0.647 5.647 14 C 0.560 3.440 15 O -0.514 6.514 16 C -0.114 4.114 17 S -0.142 6.142 18 C -0.519 4.519 19 H 0.087 0.913 20 C 0.095 3.905 21 N -0.882 5.882 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.109 3.891 27 C 0.081 3.919 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.397 0.603 32 H 0.403 0.597 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.270 0.730 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.775 11.311 8.710 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.047 4.047 3 H 0.084 0.916 4 C 0.296 3.704 5 N -0.426 5.426 6 O -0.378 6.378 7 N -0.239 5.239 8 C -0.078 4.078 9 C -0.152 4.152 10 C -0.141 4.141 11 C -0.091 4.091 12 C 0.001 3.999 13 N -0.385 5.385 14 C 0.349 3.651 15 O -0.388 6.388 16 C -0.264 4.264 17 S 0.085 5.915 18 C -0.667 4.667 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.519 5.519 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.015 4.015 27 C -0.046 4.046 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.225 0.775 32 H 0.235 0.765 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.503 8.560 7.801 30.766 hybrid contribution 0.701 1.850 -0.113 1.982 sum -27.802 10.410 7.689 30.666 Atomic orbital electron populations 1.21955 0.92122 1.03746 1.02751 1.21507 0.96872 0.96088 0.90269 0.91587 1.20488 0.80250 0.84873 0.84784 1.43874 1.56570 1.33901 1.08211 1.90862 1.35682 1.25015 1.86207 1.61587 1.04184 1.57069 1.01030 1.22256 0.98923 0.96782 0.89859 1.21582 0.95665 1.01276 0.96677 1.21445 0.95033 1.01931 0.95719 1.21794 0.94737 0.96980 0.95637 1.22796 0.82972 0.94628 0.99491 1.49552 1.16062 1.29504 1.43432 1.19776 0.84465 0.83198 0.77626 1.90710 1.77267 1.24034 1.46825 1.23198 0.94721 1.03844 1.04644 1.84804 1.13467 1.37383 1.55870 1.22329 0.97841 1.14327 1.32170 0.89476 1.24703 0.93992 0.96981 0.95624 1.69943 1.04007 1.39089 1.38884 0.86733 0.79000 0.84156 0.81991 1.19208 1.19974 1.15857 1.23023 0.94474 0.88971 0.95041 1.21825 0.87293 0.96793 0.98673 0.91588 0.90868 0.90902 0.77534 0.76548 0.94845 0.89950 0.91243 0.90697 0.90974 0.91486 0.89374 0.90658 0.88787 0.88914 0.92008 0.89529 0.90480 0.94709 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.35 37.16 0.31 -0.43 16 2 C 0.06 0.51 2.54 -68.86 -0.17 0.34 16 3 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 4 C 0.51 5.61 7.13 -10.99 -0.08 5.53 16 5 N -0.86 -6.02 8.77 31.22 0.27 -5.75 16 6 O -0.51 -8.50 15.50 5.56 0.09 -8.41 16 7 N -0.51 -4.84 4.23 -228.28 -0.96 -5.81 16 8 C 0.05 0.32 4.85 -3.86 -0.02 0.31 16 9 C -0.11 -0.73 6.08 -26.55 -0.16 -0.89 16 10 C -0.10 -0.72 5.23 -26.76 -0.14 -0.86 16 11 C -0.09 -0.92 0.95 -154.90 -0.15 -1.06 16 12 C 0.12 1.66 7.70 -8.19 -0.06 1.60 16 13 N -0.65 -10.47 3.47 -184.98 -0.64 -11.11 16 14 C 0.56 11.87 8.10 -10.98 -0.09 11.78 16 15 O -0.51 -13.03 16.64 5.56 0.09 -12.94 16 16 C -0.11 -2.48 5.98 36.01 0.22 -2.27 16 17 S -0.14 -3.86 18.55 -107.50 -1.99 -5.86 16 18 C -0.52 -15.61 10.04 30.94 0.31 -15.30 16 19 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 20 C 0.10 2.89 5.50 -17.43 -0.10 2.79 16 21 N -0.88 -27.35 13.97 55.49 0.78 -26.57 16 22 Si 0.86 22.66 27.74 -169.99 -4.72 17.94 16 23 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.23 -6.24 6.74 56.52 0.38 -5.86 16 26 C 0.11 1.24 7.60 -8.05 -0.06 1.18 16 27 C 0.08 0.90 4.30 -3.99 -0.02 0.88 16 28 H 0.07 0.20 7.57 -51.93 -0.39 -0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.27 6.17 -51.93 -0.32 -0.05 16 31 H 0.40 1.34 8.25 -40.82 -0.34 1.00 16 32 H 0.40 2.89 8.93 -40.82 -0.36 2.52 16 33 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.44 5.69 -51.93 -0.30 0.14 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 41 H 0.09 1.92 8.14 -51.91 -0.42 1.49 16 42 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 43 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 1.47 6.01 -51.93 -0.31 1.16 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -39.68 386.66 -8.97 -48.65 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.50 Total: 0.43 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.21 Total: 3.60 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.56 Total: -49.24 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.18 Total: -21.35 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.72 Total: 17.94 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -1.99 Total: -5.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.68 -8.97 -48.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717626420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.904 kcal (2) G-P(sol) polarization free energy of solvation -39.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds