Wall clock time and date at job start Wed Apr 1 2020 00:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47026 * 2 1 4 4 C 1.50695 * 109.46904 * 239.99835 * 2 1 3 5 5 N 1.34778 * 120.00183 * 60.00127 * 4 2 1 6 6 O 1.21280 * 119.99985 * 239.99838 * 4 2 1 7 7 N 1.46902 * 109.46781 * 120.00019 * 2 1 3 8 8 C 1.46809 * 111.00002 * 314.14099 * 7 2 1 9 9 C 1.53034 * 109.79927 * 172.35307 * 8 7 2 10 10 C 1.53319 * 109.16042 * 61.06675 * 9 8 7 11 11 C 1.52616 * 108.89536 * 304.76566 * 10 9 8 12 12 C 1.52916 * 114.10734 * 280.67649 * 11 10 9 13 13 N 1.47172 * 87.83874 * 220.51329 * 12 11 10 14 14 C 1.34775 * 135.99230 * 206.63016 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99746 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99690 * 22 20 18 24 24 H 1.48494 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48501 * 109.46989 * 330.00246 * 22 20 18 26 26 C 1.47168 * 88.00754 * 26.88981 * 13 12 11 27 27 C 1.47048 * 110.99319 * 189.99979 * 7 2 1 28 28 H 1.09006 * 109.47432 * 59.99985 * 1 2 3 29 29 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47100 * 300.00231 * 1 2 3 31 31 H 0.97005 * 119.99961 * 0.02562 * 5 4 2 32 32 H 0.96994 * 120.00648 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.42517 * 292.45520 * 8 7 2 34 34 H 1.09004 * 109.41658 * 52.32317 * 8 7 2 35 35 H 1.09003 * 109.52301 * 180.96824 * 9 8 7 36 36 H 1.08990 * 109.52138 * 301.09740 * 9 8 7 37 37 H 1.09007 * 109.56558 * 184.94689 * 10 9 8 38 38 H 1.08999 * 109.56883 * 64.59325 * 10 9 8 39 39 H 1.08995 * 113.49259 * 105.76756 * 12 11 10 40 40 H 1.08999 * 113.49408 * 335.25204 * 12 11 10 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.49014 * 87.85597 * 26 13 12 45 45 H 1.09002 * 113.48990 * 218.36473 * 26 13 12 46 46 H 1.08993 * 109.50343 * 63.21945 * 27 7 2 47 47 H 1.08998 * 109.52999 * 303.12815 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 7 2.0196 -0.6925 1.1995 8 6 1.2950 -0.2478 2.3963 9 6 1.6894 -1.1158 3.5934 10 6 3.1937 -0.9668 3.8492 11 6 3.9490 -1.3063 2.5673 12 6 4.0983 -2.8061 2.3090 13 7 5.4733 -2.5352 1.8593 14 6 6.3512 -3.1187 1.0196 15 8 6.0422 -4.1300 0.4258 16 6 7.7167 -2.5138 0.8176 17 16 8.6541 -3.5197 -0.3594 18 6 10.1627 -2.6104 -0.4056 19 1 10.2745 -1.7191 0.1939 20 6 11.2078 -3.0403 -1.2115 21 7 12.3345 -2.3608 -1.2464 22 14 11.0147 -4.5825 -2.2479 23 1 10.4662 -4.2187 -3.5791 24 1 12.3385 -5.2329 -2.4189 25 1 10.0855 -5.5215 -1.5696 26 6 5.4712 -1.3515 2.7338 27 6 3.4699 -0.5091 1.3586 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1493 0.5389 -2.5436 32 1 2.0302 -0.7070 -3.2465 33 1 1.5443 0.7925 2.6054 34 1 0.2223 -0.3357 2.2240 35 1 1.1362 -0.7930 4.4754 36 1 1.4569 -2.1589 3.3793 37 1 3.4981 -1.6482 4.6437 38 1 3.4143 0.0597 4.1420 39 1 3.4476 -3.1776 1.5175 40 1 4.0486 -3.4101 3.2149 41 1 8.2448 -2.4824 1.7707 42 1 7.6115 -1.5016 0.4271 43 1 13.0647 -2.6610 -1.8099 44 1 5.7906 -1.5643 3.7539 45 1 5.9828 -0.4913 2.3018 46 1 3.6886 0.5479 1.5099 47 1 3.9822 -0.8621 0.4636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717626420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:26 Heat of formation + Delta-G solvation = -56.551504 kcal Electronic energy + Delta-G solvation = -28421.048887 eV Core-core repulsion = 24537.128236 eV Total energy + Delta-G solvation = -3883.920650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.16796 -40.77486 -39.54999 -37.97946 -35.06336 -34.71884 -34.25973 -32.20768 -31.30806 -30.24676 -27.93865 -27.18282 -26.89653 -25.94302 -24.44570 -22.44016 -20.92516 -20.68539 -19.64887 -19.34823 -18.49389 -18.00259 -17.82337 -17.22422 -17.11690 -16.79380 -16.56479 -16.21213 -15.79200 -15.62067 -15.51099 -15.23221 -14.95033 -14.79283 -14.33104 -14.18835 -13.88930 -13.72464 -13.62823 -13.40092 -13.27137 -13.08275 -13.05234 -12.94441 -12.70825 -12.61872 -12.37371 -11.92564 -11.90542 -11.57329 -11.42194 -11.21364 -11.12186 -10.90068 -10.67234 -10.60283 -10.59439 -9.75346 -9.19724 -9.06567 -8.55852 -6.27595 0.89796 1.27435 1.40319 1.48790 1.52499 1.70130 1.96381 2.21950 2.41109 2.63401 2.82008 2.84135 3.31673 3.51900 3.69954 3.87604 3.97612 4.06012 4.07626 4.11682 4.16262 4.27843 4.32259 4.36414 4.46493 4.50754 4.60037 4.65337 4.72015 4.75701 4.82613 4.86476 4.88675 4.93917 5.03408 5.13448 5.20203 5.24906 5.43006 5.53682 5.66908 5.88812 6.01145 6.06186 6.21180 6.54884 6.63648 6.89162 7.05759 7.43106 8.56720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002936 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.352937 B = 9534.622388 C =10638.994703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.086 0.914 4 C 0.504 3.496 5 N -0.842 5.842 6 O -0.576 6.576 7 N -0.535 5.535 8 C 0.048 3.952 9 C -0.114 4.114 10 C -0.096 4.096 11 C -0.070 4.070 12 C 0.120 3.880 13 N -0.648 5.648 14 C 0.556 3.444 15 O -0.571 6.571 16 C -0.095 4.095 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.049 3.951 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.253 1.253 25 H -0.241 1.241 26 C 0.105 3.895 27 C 0.084 3.916 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.417 0.583 32 H 0.402 0.598 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.278 0.722 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.150 13.268 10.685 35.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 H 0.103 0.897 4 C 0.289 3.711 5 N -0.407 5.407 6 O -0.454 6.454 7 N -0.260 5.260 8 C -0.079 4.079 9 C -0.151 4.151 10 C -0.134 4.134 11 C -0.071 4.071 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.345 3.655 15 O -0.451 6.451 16 C -0.246 4.246 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.157 4.157 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.177 1.177 25 H -0.165 1.165 26 C -0.017 4.017 27 C -0.044 4.044 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.233 0.767 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -30.939 10.621 9.805 34.149 hybrid contribution 1.289 1.387 -0.679 2.012 sum -29.650 12.008 9.125 33.266 Atomic orbital electron populations 1.21964 0.89600 1.03293 1.04997 1.21609 0.98633 0.96050 0.88244 0.89672 1.21249 0.79166 0.84142 0.86564 1.43772 1.55667 1.34049 1.07255 1.90842 1.39012 1.28302 1.87290 1.61514 1.03370 1.58470 1.02691 1.22387 0.99380 0.97543 0.88581 1.21615 0.95476 1.00398 0.97655 1.21470 0.94850 1.03477 0.93593 1.21719 0.94294 0.93821 0.97248 1.23055 0.80541 0.97737 0.98861 1.49607 1.16178 1.30326 1.42224 1.19564 0.84719 0.82802 0.78452 1.90672 1.78317 1.26543 1.49519 1.23114 0.94869 1.02987 1.03657 1.84787 1.13055 1.38850 1.58448 1.22408 0.99306 1.13888 1.31959 0.91910 1.25511 0.93715 0.99786 0.96642 1.70003 1.04778 1.40620 1.39799 0.85900 0.79725 0.80653 0.80303 1.18734 1.17667 1.16511 1.23463 0.95678 0.87063 0.95495 1.21653 0.88458 0.97412 0.96858 0.89323 0.92600 0.88724 0.75173 0.76704 0.93238 0.88481 0.88559 0.92417 0.89673 0.89311 0.93034 0.88329 0.87022 0.87950 0.91201 0.86289 0.89852 0.93088 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.35 71.98 0.60 -0.44 16 2 C 0.07 0.95 2.54 44.17 0.11 1.06 16 3 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 4 C 0.50 11.30 7.13 87.66 0.63 11.93 16 5 N -0.84 -11.57 8.77 -173.54 -1.52 -13.09 16 6 O -0.58 -20.94 15.50 -3.03 -0.05 -20.99 16 7 N -0.53 -9.43 4.23 -876.15 -3.70 -13.13 16 8 C 0.05 0.46 4.85 86.33 0.42 0.88 16 9 C -0.11 -1.04 6.08 30.71 0.19 -0.85 16 10 C -0.10 -0.96 5.23 30.57 0.16 -0.80 16 11 C -0.07 -1.29 0.95 -52.43 -0.05 -1.34 16 12 C 0.12 3.22 7.70 83.33 0.64 3.86 16 13 N -0.65 -21.07 3.47 -857.53 -2.97 -24.04 16 14 C 0.56 24.30 8.10 87.66 0.71 25.01 16 15 O -0.57 -30.45 16.64 -3.04 -0.05 -30.50 16 16 C -0.10 -4.25 5.98 71.24 0.43 -3.83 16 17 S -0.18 -9.96 18.55 -56.49 -1.05 -11.00 16 18 C -0.53 -32.51 10.04 67.96 0.68 -31.83 16 19 H 0.06 4.04 8.03 -2.91 -0.02 4.02 16 20 C 0.05 3.01 5.50 84.86 0.47 3.47 16 21 N -0.91 -57.21 13.97 21.65 0.30 -56.91 16 22 Si 0.91 47.27 27.74 68.60 1.90 49.17 16 23 H -0.26 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.25 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.24 -12.68 6.74 99.48 0.67 -12.01 16 26 C 0.11 2.16 7.60 83.42 0.63 2.80 16 27 C 0.08 1.79 4.30 86.12 0.37 2.16 16 28 H 0.09 0.24 7.57 -2.38 -0.02 0.22 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.31 6.17 -2.38 -0.01 0.30 16 31 H 0.42 2.13 8.25 -92.70 -0.76 1.36 16 32 H 0.40 5.94 8.93 -92.71 -0.83 5.11 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 0.67 5.69 -2.39 -0.01 0.66 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.69 8.02 -2.38 -0.02 0.67 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 40 H 0.10 2.17 8.01 -2.39 -0.02 2.15 16 41 H 0.11 4.54 8.14 -2.39 -0.02 4.52 16 42 H 0.10 4.32 8.14 -2.40 -0.02 4.30 16 43 H 0.28 16.04 8.31 -92.70 -0.77 15.26 16 44 H 0.12 1.77 8.10 -2.39 -0.02 1.75 16 45 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 46 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.05 1.55 6.01 -2.39 -0.01 1.53 16 Total: -1.00 -92.88 386.66 -1.79 -94.67 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.63 Total: 13.73 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.99 Total: 12.09 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -7.89 Total: -107.18 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.10 Total: -51.48 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Atomic # 16 Polarization: -9.96 SS G_CDS: -1.05 Total: -11.00 kcal Total: -92.88 -1.79 -94.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717626420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.115 kcal (2) G-P(sol) polarization free energy of solvation -92.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds