Wall clock time and date at job start Wed Apr 1 2020 00:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50699 * 109.47177 * 239.99908 * 2 1 3 5 5 N 1.34769 * 120.00200 * 81.09734 * 4 2 1 6 6 O 1.21283 * 119.99457 * 261.09314 * 4 2 1 7 7 N 1.46906 * 109.46830 * 119.99826 * 2 1 3 8 8 C 1.48482 * 110.99880 * 47.26666 * 7 2 1 9 9 C 1.54932 * 103.21956 * 200.16918 * 8 7 2 10 10 C 1.54444 * 102.93801 * 37.70666 * 9 8 7 11 11 N 1.46500 * 112.39854 * 99.37118 * 10 9 8 12 12 C 1.34771 * 120.00196 * 62.10576 * 11 10 9 13 13 O 1.21285 * 120.00019 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00275 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47404 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00054 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00534 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31630 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47387 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47132 * 120.00405 * 20 18 16 23 23 H 1.48508 * 109.47050 * 239.99864 * 20 18 16 24 24 C 1.54111 * 109.02676 * 223.77348 * 10 9 8 25 25 C 1.54885 * 104.15893 * 137.48354 * 24 10 9 26 26 C 1.54825 * 102.74019 * 321.55044 * 25 24 10 27 27 C 1.47917 * 111.00157 * 289.65835 * 7 2 1 28 28 H 1.09005 * 111.35133 * 23.09492 * 27 7 2 29 29 H 1.09001 * 109.47262 * 172.07571 * 1 2 3 30 30 H 1.09002 * 109.47497 * 292.07450 * 1 2 3 31 31 H 1.09002 * 109.46742 * 52.07456 * 1 2 3 32 32 H 0.97004 * 119.99763 * 359.97438 * 5 4 2 33 33 H 0.96994 * 120.00609 * 179.72896 * 5 4 2 34 34 H 1.08998 * 110.66935 * 318.59907 * 8 7 2 35 35 H 1.08998 * 110.66916 * 81.73622 * 8 7 2 36 36 H 1.08996 * 110.71306 * 279.34327 * 9 8 7 37 37 H 1.08993 * 110.87049 * 156.14312 * 9 8 7 38 38 H 0.97002 * 120.00056 * 242.10600 * 11 10 9 39 39 H 1.09004 * 109.47060 * 299.99397 * 14 12 11 40 40 H 1.09003 * 109.47200 * 59.99723 * 14 12 11 41 41 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.49431 * 18.81440 * 24 10 9 43 43 H 1.09006 * 110.60954 * 256.20887 * 24 10 9 44 44 H 1.09000 * 110.76144 * 203.23181 * 25 24 10 45 45 H 1.09004 * 110.91298 * 79.93134 * 25 24 10 46 46 H 1.09002 * 110.43805 * 279.05569 * 26 25 24 47 47 H 1.08994 * 110.55109 * 156.58250 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0867 -0.0596 -2.4093 6 8 2.3878 -1.8678 -1.1597 7 7 2.0196 -0.6925 1.1995 8 6 1.3101 -1.9819 1.3964 9 6 1.5457 -2.2905 2.8963 10 6 1.4555 -0.8963 3.5546 11 7 0.1455 -0.6497 4.1623 12 6 -0.2861 -1.4297 5.1731 13 8 0.4099 -2.3361 5.5793 14 6 -1.6338 -1.1764 5.7979 15 16 -1.9229 -2.3806 7.1179 16 6 -3.5195 -1.8661 7.6571 17 1 -4.0065 -1.0281 7.1805 18 6 -4.1515 -2.5377 8.6945 19 7 -3.5579 -3.5586 9.2758 20 14 -5.8439 -1.9918 9.2666 21 1 -6.2884 -0.8283 8.4580 22 1 -6.8074 -3.1091 9.0986 23 1 -5.7809 -1.6036 10.6987 24 6 2.5960 -0.7504 4.5807 25 6 3.1274 0.6868 4.3547 26 6 3.0559 0.8392 2.8157 27 6 1.7583 0.1064 2.4167 28 1 0.9379 0.8074 2.2627 29 1 -0.3634 -1.0179 -0.1417 30 1 -0.3634 0.3862 0.9523 31 1 -0.3633 0.6317 -0.8107 32 1 1.8021 0.8660 -2.4659 33 1 2.4137 -0.5156 -3.2005 34 1 0.2458 -1.8709 1.1891 35 1 1.7459 -2.7604 0.7703 36 1 2.5329 -2.7263 3.0497 37 1 0.7698 -2.9508 3.2834 38 1 -0.4114 0.0750 3.8372 39 1 -1.6580 -0.1692 6.2138 40 1 -2.4103 -1.2749 5.0392 41 1 -3.9993 -4.0278 10.0010 42 1 3.3801 -1.4822 4.3864 43 1 2.2151 -0.8612 5.5960 44 1 4.1556 0.7780 4.7047 45 1 2.4873 1.4199 4.8456 46 1 3.9192 0.3676 2.3460 47 1 2.9999 1.8915 2.5375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717833709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:12 Heat of formation + Delta-G solvation = -63.674828 kcal Electronic energy + Delta-G solvation = -28469.920864 eV Core-core repulsion = 24585.691323 eV Total energy + Delta-G solvation = -3884.229541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19360 -39.71683 -38.27723 -35.71315 -34.10183 -33.56023 -32.43259 -32.12505 -30.05564 -28.95780 -26.95747 -26.43206 -25.45650 -24.77989 -22.11407 -21.10415 -20.48525 -19.65702 -19.26721 -17.99880 -17.77867 -17.08600 -16.57226 -16.03733 -15.64229 -15.43725 -15.18829 -14.81401 -14.77065 -14.58744 -14.21700 -14.14846 -13.91231 -13.40602 -13.04408 -12.90295 -12.75780 -12.62412 -12.19542 -12.13466 -11.99293 -11.68203 -11.52465 -11.20042 -11.09924 -11.08111 -11.01291 -10.88961 -10.82562 -10.75226 -10.55112 -10.03967 -10.01856 -9.80750 -9.28030 -9.08036 -8.80464 -8.63831 -8.22906 -6.49714 -6.22208 -3.92374 2.32419 2.91577 3.07212 3.11596 3.20849 3.27610 3.31882 3.64573 3.84688 4.12405 4.19954 4.33043 4.51801 4.55730 4.65448 4.72164 4.96852 5.04388 5.10540 5.11800 5.13044 5.18697 5.23022 5.33932 5.37478 5.54546 5.58953 5.63906 5.70384 5.77634 5.83150 5.88712 5.89755 6.05027 6.13314 6.15351 6.22500 6.26658 6.29976 6.41805 6.56204 6.65457 6.88534 6.99100 7.59256 7.73118 7.95687 8.34798 8.64922 9.23284 10.85208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002506 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.211815 B =11171.995476 C =11774.833459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.102 0.898 4 C 0.527 3.473 5 N -0.858 5.858 6 O -0.524 6.524 7 N -0.486 5.486 8 C 0.028 3.972 9 C -0.122 4.122 10 C 0.172 3.828 11 N -0.726 5.726 12 C 0.534 3.466 13 O -0.508 6.508 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.108 4.108 27 C 0.060 3.940 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.401 0.599 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.268 0.732 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 13.758 -22.280 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.060 4.060 3 H 0.120 0.880 4 C 0.311 3.689 5 N -0.423 5.423 6 O -0.398 6.398 7 N -0.210 5.210 8 C -0.099 4.099 9 C -0.161 4.161 10 C 0.084 3.916 11 N -0.380 5.380 12 C 0.320 3.680 13 O -0.382 6.382 14 C -0.305 4.305 15 S 0.169 5.831 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.158 4.158 25 C -0.162 4.162 26 C -0.146 4.146 27 C -0.049 4.049 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.232 0.768 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.228 0.772 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.322 11.242 -21.296 27.521 hybrid contribution -3.179 2.304 -0.638 3.978 sum 10.143 13.547 -21.934 27.703 Atomic orbital electron populations 1.22412 0.94761 1.03656 1.03425 1.21784 0.94612 0.98876 0.90746 0.87969 1.20388 0.77054 0.86942 0.84510 1.43853 1.69894 1.17227 1.11318 1.90738 1.46868 1.17015 1.85190 1.64954 1.53013 1.03340 0.99658 1.23548 0.97058 0.92000 0.97265 1.22894 1.03696 0.96204 0.93324 1.21348 0.83664 0.94597 0.91944 1.46028 1.18907 1.35734 1.37319 1.20234 0.87747 0.81340 0.78715 1.90707 1.56631 1.30067 1.60757 1.23545 0.95929 1.06615 1.04372 1.85399 1.23088 1.38485 1.36167 1.22903 1.03341 1.19756 1.22326 0.90965 1.24993 0.98569 0.94619 0.95438 1.70024 1.37843 1.19287 1.23084 0.86126 0.82290 0.78574 0.78547 1.19659 1.20570 1.20564 1.22676 0.96612 0.96508 1.00048 1.22524 1.01181 0.97254 0.95279 1.22362 0.97212 0.99060 0.96004 1.23278 0.97877 0.94491 0.89217 0.91319 0.90971 0.90960 0.91376 0.77261 0.76770 0.93051 0.88270 0.89891 0.89777 0.77194 0.89397 0.89472 0.92235 0.90505 0.90118 0.91326 0.91633 0.89915 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 8.08 37.16 0.30 -0.90 16 2 C 0.05 0.39 2.65 -68.86 -0.18 0.21 16 3 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 4 C 0.53 4.66 7.27 -10.99 -0.08 4.58 16 5 N -0.86 -3.97 8.87 31.22 0.28 -3.69 16 6 O -0.52 -7.03 15.35 5.55 0.09 -6.95 16 7 N -0.49 -4.85 4.53 -214.88 -0.97 -5.82 16 8 C 0.03 0.33 5.51 -1.93 -0.01 0.32 16 9 C -0.12 -1.65 5.87 -24.95 -0.15 -1.80 16 10 C 0.17 2.08 0.83 -129.61 -0.11 1.98 16 11 N -0.73 -9.45 5.26 -45.57 -0.24 -9.69 16 12 C 0.53 9.58 6.91 -10.99 -0.08 9.50 16 13 O -0.51 -10.96 13.39 5.55 0.07 -10.89 16 14 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 15 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 16 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 20 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.12 -1.53 5.63 -25.16 -0.14 -1.67 16 25 C -0.12 -1.22 6.90 -24.77 -0.17 -1.39 16 26 C -0.11 -0.93 6.51 -25.11 -0.16 -1.09 16 27 C 0.06 0.56 2.73 -65.61 -0.18 0.38 16 28 H 0.07 0.54 5.92 -51.93 -0.31 0.24 16 29 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 30 H 0.07 0.47 6.50 -51.93 -0.34 0.13 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 33 H 0.40 1.61 8.93 -40.82 -0.36 1.25 16 34 H 0.05 0.59 5.43 -51.93 -0.28 0.31 16 35 H 0.10 1.35 6.65 -51.93 -0.35 1.00 16 36 H 0.08 1.14 7.22 -51.93 -0.37 0.77 16 37 H 0.08 1.35 6.89 -51.93 -0.36 0.99 16 38 H 0.39 4.04 8.30 -40.82 -0.34 3.70 16 39 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.08 0.99 7.21 -51.93 -0.37 0.61 16 43 H 0.08 1.27 6.64 -51.93 -0.34 0.92 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.78 7.97 -51.93 -0.41 0.36 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -36.07 378.10 -9.15 -45.22 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.04 Total: 4.51 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.54 Total: -5.57 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.20 Total: -44.59 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.16 Total: -17.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.07 -9.15 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.451 kcal (2) G-P(sol) polarization free energy of solvation -36.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds