Wall clock time and date at job start Wed Apr 1 2020 00:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50699 * 109.47177 * 239.99908 * 2 1 3 5 5 N 1.34769 * 120.00200 * 81.09734 * 4 2 1 6 6 O 1.21283 * 119.99457 * 261.09314 * 4 2 1 7 7 N 1.46906 * 109.46830 * 119.99826 * 2 1 3 8 8 C 1.48482 * 110.99880 * 47.26666 * 7 2 1 9 9 C 1.54932 * 103.21956 * 200.16918 * 8 7 2 10 10 C 1.54444 * 102.93801 * 37.70666 * 9 8 7 11 11 N 1.46500 * 112.39854 * 99.37118 * 10 9 8 12 12 C 1.34771 * 120.00196 * 62.10576 * 11 10 9 13 13 O 1.21285 * 120.00019 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00275 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47404 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00054 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00534 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31630 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47387 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47132 * 120.00405 * 20 18 16 23 23 H 1.48508 * 109.47050 * 239.99864 * 20 18 16 24 24 C 1.54111 * 109.02676 * 223.77348 * 10 9 8 25 25 C 1.54885 * 104.15893 * 137.48354 * 24 10 9 26 26 C 1.54825 * 102.74019 * 321.55044 * 25 24 10 27 27 C 1.47917 * 111.00157 * 289.65835 * 7 2 1 28 28 H 1.09005 * 111.35133 * 23.09492 * 27 7 2 29 29 H 1.09001 * 109.47262 * 172.07571 * 1 2 3 30 30 H 1.09002 * 109.47497 * 292.07450 * 1 2 3 31 31 H 1.09002 * 109.46742 * 52.07456 * 1 2 3 32 32 H 0.97004 * 119.99763 * 359.97438 * 5 4 2 33 33 H 0.96994 * 120.00609 * 179.72896 * 5 4 2 34 34 H 1.08998 * 110.66935 * 318.59907 * 8 7 2 35 35 H 1.08998 * 110.66916 * 81.73622 * 8 7 2 36 36 H 1.08996 * 110.71306 * 279.34327 * 9 8 7 37 37 H 1.08993 * 110.87049 * 156.14312 * 9 8 7 38 38 H 0.97002 * 120.00056 * 242.10600 * 11 10 9 39 39 H 1.09004 * 109.47060 * 299.99397 * 14 12 11 40 40 H 1.09003 * 109.47200 * 59.99723 * 14 12 11 41 41 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.49431 * 18.81440 * 24 10 9 43 43 H 1.09006 * 110.60954 * 256.20887 * 24 10 9 44 44 H 1.09000 * 110.76144 * 203.23181 * 25 24 10 45 45 H 1.09004 * 110.91298 * 79.93134 * 25 24 10 46 46 H 1.09002 * 110.43805 * 279.05569 * 26 25 24 47 47 H 1.08994 * 110.55109 * 156.58250 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0867 -0.0596 -2.4093 6 8 2.3878 -1.8678 -1.1597 7 7 2.0196 -0.6925 1.1995 8 6 1.3101 -1.9819 1.3964 9 6 1.5457 -2.2905 2.8963 10 6 1.4555 -0.8963 3.5546 11 7 0.1455 -0.6497 4.1623 12 6 -0.2861 -1.4297 5.1731 13 8 0.4099 -2.3361 5.5793 14 6 -1.6338 -1.1764 5.7979 15 16 -1.9229 -2.3806 7.1179 16 6 -3.5195 -1.8661 7.6571 17 1 -4.0065 -1.0281 7.1805 18 6 -4.1515 -2.5377 8.6945 19 7 -3.5579 -3.5586 9.2758 20 14 -5.8439 -1.9918 9.2666 21 1 -6.2884 -0.8283 8.4580 22 1 -6.8074 -3.1091 9.0986 23 1 -5.7809 -1.6036 10.6987 24 6 2.5960 -0.7504 4.5807 25 6 3.1274 0.6868 4.3547 26 6 3.0559 0.8392 2.8157 27 6 1.7583 0.1064 2.4167 28 1 0.9379 0.8074 2.2627 29 1 -0.3634 -1.0179 -0.1417 30 1 -0.3634 0.3862 0.9523 31 1 -0.3633 0.6317 -0.8107 32 1 1.8021 0.8660 -2.4659 33 1 2.4137 -0.5156 -3.2005 34 1 0.2458 -1.8709 1.1891 35 1 1.7459 -2.7604 0.7703 36 1 2.5329 -2.7263 3.0497 37 1 0.7698 -2.9508 3.2834 38 1 -0.4114 0.0750 3.8372 39 1 -1.6580 -0.1692 6.2138 40 1 -2.4103 -1.2749 5.0392 41 1 -3.9993 -4.0278 10.0010 42 1 3.3801 -1.4822 4.3864 43 1 2.2151 -0.8612 5.5960 44 1 4.1556 0.7780 4.7047 45 1 2.4873 1.4199 4.8456 46 1 3.9192 0.3676 2.3460 47 1 2.9999 1.8915 2.5375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717833709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:11 Heat of formation + Delta-G solvation = -93.794388 kcal Electronic energy + Delta-G solvation = -28471.226946 eV Core-core repulsion = 24585.691323 eV Total energy + Delta-G solvation = -3885.535623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.11902 -40.62551 -39.45008 -36.57140 -34.76978 -34.68291 -34.57474 -33.06779 -31.05951 -30.21868 -27.84450 -27.64589 -27.29028 -25.46321 -23.16459 -22.06090 -21.31180 -20.50761 -20.43855 -19.72548 -18.63061 -17.92025 -17.54508 -17.22248 -16.88366 -16.66416 -16.38198 -16.09598 -15.94455 -15.70326 -15.40031 -15.11126 -14.82894 -14.65138 -14.49803 -14.10388 -13.84610 -13.46581 -13.31444 -13.15771 -13.01832 -12.93293 -12.92126 -12.65764 -12.55531 -12.31299 -12.11553 -11.95651 -11.82395 -11.75222 -11.67738 -11.40740 -11.15995 -10.77921 -10.76282 -10.58002 -10.25720 -10.01458 -9.40715 -8.65753 -8.34809 -6.12300 1.26820 1.40970 1.46880 1.57552 1.65979 1.69227 2.18943 2.27665 2.49488 2.99417 3.00191 3.29959 3.33083 3.54532 3.80618 3.93946 3.96667 4.02259 4.16435 4.16779 4.20069 4.28924 4.31152 4.40061 4.43914 4.50996 4.61674 4.66340 4.68641 4.80929 4.86214 4.97635 5.06473 5.08144 5.11904 5.19508 5.23819 5.27078 5.41802 5.42203 5.59571 5.82902 5.94501 6.03649 6.19835 6.53936 6.56534 7.06659 7.30246 7.44236 8.74550 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002506 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.211815 B =11171.995476 C =11774.833459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 H 0.138 0.862 4 C 0.521 3.479 5 N -0.837 5.837 6 O -0.581 6.581 7 N -0.495 5.495 8 C 0.042 3.958 9 C -0.124 4.124 10 C 0.169 3.831 11 N -0.699 5.699 12 C 0.536 3.464 13 O -0.552 6.552 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.544 4.544 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.099 4.099 27 C 0.070 3.930 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.418 0.582 33 H 0.406 0.594 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.414 0.586 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 18.053 -24.406 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.060 4.060 3 H 0.156 0.844 4 C 0.306 3.694 5 N -0.401 5.401 6 O -0.459 6.459 7 N -0.218 5.218 8 C -0.086 4.086 9 C -0.163 4.163 10 C 0.082 3.918 11 N -0.353 5.353 12 C 0.322 3.678 13 O -0.429 6.429 14 C -0.280 4.280 15 S 0.077 5.923 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.137 4.137 27 C -0.039 4.039 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.237 0.763 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.272 15.634 -23.497 30.775 hybrid contribution -2.754 0.983 -0.102 2.926 sum 9.518 16.616 -23.599 30.391 Atomic orbital electron populations 1.22398 0.93753 1.02908 1.04910 1.21950 0.95370 0.99852 0.88797 0.84392 1.20740 0.76472 0.86373 0.85845 1.43682 1.68207 1.17974 1.10260 1.90731 1.49652 1.19441 1.86115 1.64886 1.53251 1.02760 1.00947 1.23284 0.97314 0.92903 0.95073 1.22802 1.01798 0.96643 0.95039 1.21479 0.82678 0.94849 0.92782 1.45711 1.19361 1.34892 1.35378 1.19978 0.86905 0.81411 0.79519 1.90705 1.57554 1.32177 1.62432 1.23372 0.97590 1.04873 1.02157 1.85607 1.23948 1.42618 1.40127 1.23229 1.03356 1.19987 1.22605 0.89942 1.26138 1.03238 0.94478 0.95435 1.70192 1.40008 1.20814 1.23835 0.84906 0.76313 0.78566 0.78157 1.17921 1.20035 1.19955 1.22639 0.96645 0.98843 0.98149 1.22497 1.01613 0.94730 0.96652 1.22336 0.96193 1.00717 0.94461 1.23289 0.99428 0.93737 0.87397 0.88416 0.93307 0.90302 0.88572 0.75052 0.76253 0.92560 0.90560 0.91179 0.93029 0.74905 0.87303 0.87561 0.92046 0.91579 0.93568 0.90523 0.90911 0.90653 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.08 71.98 0.58 -1.13 16 2 C 0.05 0.60 2.65 44.17 0.12 0.72 16 3 H 0.14 0.66 8.08 -2.39 -0.02 0.64 16 4 C 0.52 8.20 7.27 87.66 0.64 8.84 16 5 N -0.84 -5.35 8.87 -173.54 -1.54 -6.89 16 6 O -0.58 -15.62 15.35 -3.04 -0.05 -15.66 16 7 N -0.49 -8.91 4.53 -833.74 -3.77 -12.69 16 8 C 0.04 1.00 5.51 86.66 0.48 1.48 16 9 C -0.12 -3.53 5.87 31.75 0.19 -3.34 16 10 C 0.17 4.00 0.83 5.04 0.00 4.00 16 11 N -0.70 -17.33 5.26 -416.47 -2.19 -19.52 16 12 C 0.54 19.42 6.91 87.66 0.61 20.03 16 13 O -0.55 -25.11 13.39 -3.04 -0.04 -25.15 16 14 C -0.13 -5.02 6.16 71.23 0.44 -4.58 16 15 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 16 C -0.54 -30.99 9.50 67.95 0.65 -30.34 16 17 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.67 5.49 84.86 0.47 1.13 16 19 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 20 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C -0.12 -3.20 5.63 31.61 0.18 -3.02 16 25 C -0.12 -2.04 6.90 31.86 0.22 -1.82 16 26 C -0.10 -1.33 6.51 31.65 0.21 -1.12 16 27 C 0.07 1.09 2.73 45.72 0.12 1.21 16 28 H 0.10 1.01 5.92 -2.38 -0.01 0.99 16 29 H 0.05 0.72 6.43 -2.39 -0.02 0.70 16 30 H 0.08 0.66 6.50 -2.39 -0.02 0.64 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.42 -0.45 8.83 -92.71 -0.82 -1.26 16 33 H 0.41 2.36 8.93 -92.71 -0.83 1.53 16 34 H 0.06 1.28 5.43 -2.39 -0.01 1.27 16 35 H 0.08 2.22 6.65 -2.39 -0.02 2.20 16 36 H 0.07 2.12 7.22 -2.39 -0.02 2.11 16 37 H 0.05 1.79 6.89 -2.39 -0.02 1.78 16 38 H 0.41 7.11 8.30 -92.71 -0.77 6.34 16 39 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.07 1.81 7.21 -2.39 -0.02 1.79 16 43 H 0.05 1.51 6.64 -2.38 -0.02 1.50 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.07 1.19 7.97 -2.39 -0.02 1.17 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -84.91 378.10 -2.93 -87.85 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -1.38 Total: 19.89 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.89 Total: -7.94 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -7.22 Total: -95.12 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.09 Total: -40.82 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -84.91 -2.93 -87.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.946 kcal (2) G-P(sol) polarization free energy of solvation -84.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds